LOC122356446 (LOC107690199,LOC107678592,LOC107708458)


Basic Information

Item Value
gene id LOC122356446
gene name LOC107690199,LOC107678592,LOC107708458
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1288427 ~ 1291014 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255168.1
caaaaatacttaatttaagTTCAGAATATAGAAGtttgtaaactaaaaatgaGCCTTTCCTGTGTCATTCTTTCATTTCTAGATAATCAAGAATATGGAGTACACATGTTCTGGAAGAAATTTGACTTATATTCCCAGCAGTCTTCTCACTGTGATGTCTCTGGATTTCAGTTTCAATTTCTTGAGCTCTCTACATAAGTGTGCATTTCCTGTATGGGTGAATTTGCAAGTCTTGGATCTCACAAGatgcCACATCAAGCACATTGAAAATGATACTTTCTACAATGTGAAGAATTTGATAACTCTGATTCTCACTGGAAACCCCATTACAAATTATGGACCTGGATGCTTGAATTGTTTACATAATCTACAAAGACTAGTTCTTGTGGATGTTGGTCTCTCTTCATTACAGCTTCAGATAAATAACCTAACCAAACTGCAGGAGCTTAAAGTCGGGACAAATAACATCCAGTCCATGTCTCTCCCTTTATTCATGAGCACCTTCAAAGACTTCAGTTTACTTGATCTACATGCCAATAATATATCCATCATCAAAACCGACGACACAGTTGTGTTGCGAGAGATCGGCAGAAATGTGACTTTGAATCTCTCTAGGAATCAATTATTACTCATTGAACCAGGAGCTTTCAAAGACATTTATCTCAGAGAGTTTCACATACAATCTGCCtttgtttcattaaatgcacaaaaggAGTGTCTAGCAGCTCTTTCTGGTCTCAGTGTGGATAAGCTGTTCATAGGAAGTTACAGAATGCAATGGAAAATTAAGGTGTCAGATGGAAGTTATCTTGATGGTCTTTGCTCAATTAATttcaatgaaatatattttgttcaGAAAGAATTTTCGGATTCTGAAATGCACTTGTTCCGTTGTATGATCAACGCAACAAAAATCACAATGAAAAGAACATATATTAAAAGGATGGAATATATTCCATTTCATCGTCTTGTAGAACTGTATTTAGGCCCCACTTCATTATCTGCTGTACCCTTTATTTCACATATACCTAGCTTGGAAAAACTAGTGGTGAGGAACAATATTCCCATGACCTTTAATGGTATTAGTGATTTGCCTCTTCTTCAATTTGTAGATTTGAgtggaaactttttaattttaaaggacTGCTGTTGCCAATATTTTCAAAGGACACCAAATATTCATCACATAAATTTCAGTCGAAACTCAGAGATAGGGATGGTGGGTAAGCCATTTTCTGGATTAGACTTAATTGAAGTGTTGGACCTCCACCGTACAAAACTAGTCGTGGTTTTTTACTTTGGATTTTTACATGGTCTGAAAAATTTAAAGTATTTGGATATATCTTACACAAGCATTACTTTCACAAGACAAGTGGTTTTTCAAGACCTGAACAATCTGATTGTGCTTAAAATGGCGGGGAACTATTTTCATggtgatgcattaaattaccTCTTGCAAAATCTAACAAGTTTGGAGTTTCTTGACATCTCACACTGTGGCATTGAAGAAATCTCCAGGAGATCATTTATTGGCACCCAGAAAATACGCCATTTATatttaactcaaaacaagttgatgattttagattttttgcccCTCCCAAACCTGAAACAATTAACATCACTTTATGTCGATAAAAACAGTATTACTAGCATCCCACTTCATGTTCTCCACAAGTTGCCTACAAATCTTTCAGATTTTGATTTATCCTCAAACCCCATCGATTGCTCTTGCTCCCAGACAGATTTTATTTCCTGGATTATCCAAAACCAGAACATTTTGAAGCAaccagaaaatattttttgtaaaacctCAGATTTTAGAGCAACAGACTTTGACATTGACATTTGTGTGCACAAGAAAAGATCCACAATTGTTTTATCAGTATGTTTTATTACAGTAGTAGTTCTTTTATCATTCTTGGTTTATAGGTTCCAGTTTTATCTTCAGTATTGCTGTATTCTACTGAGAGGCTACAGATCACCTGGTCAACAAGAATGTTCCTATGACGCATTTGTGATTTTCTCCAGCTATGATGAAGTCTGGGTCATGAATGAACTGATGGAGAATCTGGAGAACGGTATACCACCTATTCAGCTTTGCCTTCATATGCGGGACTTTCAAGCAGGGAAGTCCATCGCCTCCAACATTATCGATGAAGGAATAATGGGCAGTCGTAAAATTATTGTGGTGGTGTCTCAACACTTCATTGATAGTGCCTGGTGTCGCTTTGAGTTTGAACTAGCTCAGTCTCGCTTTATGATGGAACGCAGTgccaacatcatcatcatcattctgGAAGATGTGGAAGAGAGGAGGACTAAGAAAGTGTTTGGACTTCATAAGCATCTGAAAAAGAACACGTACCTAAAGTGGAGCAGAGACCCTTTGAGAAACATGAGGTTCTGGATACGCCTCAGGAAAGCTATTTTAGATCATTAATCTAGgcatgtgtttgtgaatgtgcgtaatttaaaaatcaaataaaccaATGCTTCAGTTTAAACAAA

Function

NR:

description
PREDICTED: toll-like receptor 4 isoform X1

GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0006954 inflammatory response biological_process
GO:0042495 detection of triacyl bacterial lipopeptide biological_process
GO:0034130 toll-like receptor 1 signaling pathway biological_process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
K10160 TLR4, CD284; toll-like receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255168.1 True 2511 mRNA 0.36 3 1288427 1291014

Neighbor

gene id symbol gene type direction distance location
tlr4al LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986 coding upstream 4740 1280906 ~ 1283687 (+)
LOC122356482 LOC107690165,LOC107678593,LOC107747448,LOC107678592,LOC107708458,LOC107708381 coding upstream 11102 1276525 ~ 1277325 (+)
si:ch211-198a12.6 si:ch211-198a12.6,LOC107747450,LOC107690167,LOC107589522,LOC107582518,LOC107678580,LOC108263519,LOC108444387,LOC103030417 coding upstream 13012 1269936 ~ 1275415 (+)
stox1 stox1,LOC107747447,LOC107690171,LOC107678608,LOC107708457,LOC107576485 coding upstream 20369 1253524 ~ 1268058 (+)
ccar1 ccar1,LOC107747452,LOC107690173,LOC107708455,LOC107582549 coding upstream 42456 1224840 ~ 1245971 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding downstream 1031 1292045 ~ 1296933 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding downstream 8220 1299234 ~ 1327785 (+)
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding downstream 66254 1357268 ~ 1377953 (+)
prorsd1 LOC107701441,LOC107571560 coding downstream 392236 1683250 ~ 1685179 (+)
LOC122356760 pim3,LOC107732271 coding downstream 477719 1768733 ~ 1770226 (+)
G89754 NA non-coding upstream 124039 1080132 ~ 1164388 (+)
G89775 NA non-coding upstream 139324 1148271 ~ 1149103 (+)
G89764 NA non-coding upstream 141567 1129089 ~ 1146860 (+)
G89721 NA non-coding upstream 259132 1026973 ~ 1029295 (+)
G89719 LOC108444242,LOC103386924,LOC107747461,LOC107690181 non-coding upstream 261760 1024573 ~ 1026667 (+)
LOC122356494 NA non-coding downstream 7571 1298585 ~ 1299232 (+)
G89821 mat1a,LOC107582520,LOC107570529,LOC107733750,LOC107678534,LOC107708460 non-coding downstream 40824 1331838 ~ 1335134 (+)
G89842 NA non-coding downstream 155178 1446192 ~ 1447605 (+)
G89843 NA non-coding downstream 158032 1449046 ~ 1449943 (+)
G89844 sema4ga,LOC107733683,LOC107708465,LOC107678493,LOC107690158,LOC107582524 non-coding downstream 159351 1450365 ~ 1450830 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 148232 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 277180 1008268 ~ 1011247 (+)
G89631 LOC107698159,LOC107747466 other upstream 610826 380964 ~ 677601 (+)
dlg5a dlg5a,LOC107708441,LOC107698145,LOC107678499 other upstream 911856 323731 ~ 376571 (+)
fignl1 fignl1,LOC107721231,LOC107698153,LOC107678605 other upstream 1051534 190797 ~ 236893 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 51082 1342096 ~ 1345863 (+)
G89846 NA other downstream 178391 1469405 ~ 1470135 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other downstream 290344 1581358 ~ 1613330 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 549321 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 581170 1872184 ~ 1872591 (+)

Expression


Co-expression Network