si:ch211-198a12.6 (si:ch211-198a12.6,LOC107747450,LOC107690167,LOC107589522,LOC107582518,LOC107678580,LOC108263519,LOC108444387,LOC103030417)


Basic Information

Item Value
gene id si:ch211-198a12.6
gene name si:ch211-198a12.6,LOC107747450,LOC107690167,LOC107589522,LOC107582518,LOC107678580,LOC108263519,LOC108444387,LOC103030417
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1269936 ~ 1275415 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255185.1
gagagagagagagagagagagagagagagagaaagagtgacaGAGTGCAAACAGCAACCAGGCAGTACAGACGCAACAGAGCGAAGATCTTTAGGCCGTTCACTACGCCGCGACGACCAGCAGCGCATCTCGCAAAAGAGCCTTTAAAGGGCAAAGAGGCAGGACCGATCCTGACTCGAGAGCTTACTGAGCCTGCAACGGGCATCCTTTCACATTTCTTTGCGGGAAAGCGGGGCTCGTAGAGCAACGCTAAGTTTCACTTAACCGGGAAGACGGAAGTCGTCAGGCTGGAGTGCGTCCTGATGGCTGAGTCAGAGACTGACTGTGACACACCAGGTCTCGATACGTTGGGATCTGAGTGTGTCATCGCCCATACGCAAGTCGGTGACTTGCATTATGGTGCGGAAACCGAGATTATGACTCAGGAGGACAAAAGACTTGACCTGGAGGCCATTCACGGTGATTTGGGGGCAGTGACCTGTGTGGATGTGGTAACCGAGACGGACCATGACTACATTAAATCAGAAATACACCACgatcatcatcattatttcaGCAGCGCAGAAATCAAAGGCAATGAGCATTTGCTCGGTGAGGTGCTGTTAAAGACGGAAATAGGTGGCGGAGAACATATCGTAAAGGTGGAGTCTGACCATGGAGGAGAGCTTACAGTAGAGTCAGAGAATGGCGTTATCATCCACGAAGCCCATGGTCTGCAATGCAGCGAGTGTGGTGAGATTTTTGGCTGTATGTCTGATCTGCACGAACACTTTGAAATCCACAAAGCCACTCATCCCTATATTTGCGTCCACTGTGGTGAGAGCTTCGCTGTTGAAGCCAGCCTAAGAAGTCACATGAGGATTCACATGAAAGAGAAAAGTTATACCACTGGTCTTGAGATGGTTGGTAAAGGAGTCATTGACGCATTCAACTTGAAACCCCATCAGATGATGCACTCTCCTGAAAAGCCGCACAGATGTTCAGAGTGTGGCAAAAGCTTTGCCGCGGCCATCACTCTACGGGAGCAcatgaaaatgcattcagatgACAAACCCTACAAATGCACCCAATGCCGAAAAAGCTTTGTGCGCAGACGCCATCTGAAAAAACATCAAGAGCTGCATGCCCACGATAAGCCCTTTACCTGTCTCCAGTGTGGTAAAGGCTTTACGACGGCTTCCAATCTCAAACAGCACCAGAAGACTCATGCTGGTGAAAAGCCACACAGGTGCACCCAGTGTGGAAAGTGTTTTGCGGCAGCAGCCACATTAAGAGAGCATCAGAGAATCCACTCAGGGGAGAAGCCCTACAAGTGCACCCAGTGTCGGAAGAGCTTTGTCAGGAAACGCCACCTCAAGAAGCATCAGCTGGTCCATCAGGGCGGAAAGCCCTACCGCTGCTCTCAGTGCGACAAGGGTTTCAACCATTCTTCTTCCTTGTCTCGACACCACAAGGTCCACCTGGAGGCCAAGATGTACGCTCAGGCGGATAAGGATTTCCCCTTCGATACTACGCTGAAGAGGGGAATGCACACAGGTGAAAAGCCATACAGCTGCAACCATTGTGAGAAAAGCTTCAATCACTCGTCATCGCTATCCAGACATCAGAGGACTCATTCTGATGGAAAGTCCTACACCTGTGCTCAGTGTGGGAAGAGGTTCAATCATCCCTCCTCTCTCGCAAGACACCAGCGGGTTCATTTGGAGGATAAGGCAACTTATAGCGCTATTGCAACAGGAAAGGGATTCCCCCACACTACCATCTTGAAACAGAGAATCCTTCAGAGTGAGAAACCATATAGGTGCGCTCAGTGTGGAAAGGGTTTCAATCATTCGTCTTCTCTGTCTAGGCATCACAGAATTCATATTGATCAGTAAGCCTGCTTTCCTCTCCCCGCAAGTGGTGTGCTACCATTCATCCCATGATTCAGGCCAGCTTGTAATGTTAAAGAGTTTGGCAGAAGATTCAAGAAAATCCAGAGAGTCGGCGTGGACCTGCTCTGAGGGAACTTATGAAATCAAGTCCTTTTGACTTTTTAAGAGCAATGAAATTCAATTAGGTATGATTGACACTGAAATCTCCTGTGTAATGTTCACATGACTAGATGCATACATGTCATTCTGCAACATAGTGTGGGATTAAATCTTCCATCATCACTGACTTGTGCTTTAAGTGGGAAATCTGGCACAATCTTGAACTGAGTATTAGGTCAAGTTGGTTTTGAATGGAAGATAACTAAGCAAATGAGTCTAGACACAACTATTCACTCCCCTAGTTTGTATCTTTTACCCATCTCTGTATCATTCATGGGTTGAGAAACTGGTATCACgtgtaaatatgttttccttttatATAGATGTATAGGTGAGTAGTGTGCTGTTCTTTTCTGAAAAAATTGAGCATTTTTTGATGTACGATACAGTTAGTCTTATATCCATCTCTTGTAGGTGAAGTGGGATGGTGCTTTTAGGGGATGACACTAGTTTTGAACAAGCTGTCCTATATAAAGGCTATATGAATTATAAACCCTTTATGATACATACAACGGAGTCTGCAACCTAAAGCAGCATGTTAACTTGACTAACACCTGGAAATTTTCTGAAAACAGCCGCACAAAGAGCGAGGGGCAAGAAACGCCTTGTCATCAAGTCAAGTTGAGAAAAGGAGATCTTGATCATAAAAGGTCAACCCAACAAAATGAGATGGCGTATACGTTCTGTTGGGAAATTTGGTTCACTTTTCTTGTTGCTAGTTTTCAACACAACTTAATTGTACAGctaattttgttatattatgcAGACTTGGTACAGCCTAAGCATTCCCCTGAATGACTTCAGTGCTTCTCCCTGCTAGCCACCTGTGTTACCAATGACTGACTGTGCATTGAAAATTTTCCCAGTCACTGCTCAAGTCAGACAGCAATGTATAGCATTTAGTTGTATTCTGGATACGTTTTGCAGAGTatcaacatttaataataataataatagattgtGTATACtttaatgcaaatacaaaatatagcTTGCTTTTTTGAaatttgtttggttgttttgtttttttttcccacctttAAATTCCATGGGTTTGTGCTTTCTATTTACAGTTCTGTGTATGGAGAAAATCTTTTACAAAcggatgtatttttttaataaggtttGAGTAATTGAAAGGGAAATGAAAGGAATACTGTTTTTATGGGAGTGAACATTGTATCAGAActattctctttcttttccattGGATAACAGTTGTGCTTCATCACGTAGCATAGGTTTATTCATTGTGTTAGTTAGGTGCCTTATTGCATGCCATGTAGAAATGTATGCCGAGCTGTAATAGAAAAAATAAGGTTTTGGCTCCTGctcccttttttgttttttcgcATACTaatcaatgttttaatttgatttattattattttttttgcttctctGTACATGAATGTTTACACTGTTACTTCTGTCTTTTAATTTACTTGTCTGTCAACAAGCCTCTTTGTAGAATGGAGGTTGAAGGAAGTTACAATGCCATTGATCCATATGTTGATTGCCCTCTATAGTGGTCAATTCTTGTCCTATTTGTCTATTCCCCCGACTTTGAGTGGCTCACATATATGGATAAATAAAGGTTGTTGACTATCAACAAGttcaaa
>XM_043255186.1
TCGGAGGTGTTCGGTAGCAATGGCGGCGGGGGCAGCTAGTGTTCCGCTAGCGAGGCAGCTTAACGTTAGCAGGAAGACAGGCCATGTTTGTTTCACGCAGCTAAAAATGGGCTAGGACTATAGCATAGGGAGCGCAGCTTATAGCAACGCTATGCTCGTTTCTAGCGATTTGGGCGATTTGAGAATAGCGCTCTGCCCCGAAATGGGTCGGGAACGcggtattttgttttttaattcgaCGCCACGAAACAAAAACGCGTTATGTAAGAAGGGGGGCGCCTTTCCCGGGCTTTCGCGAATAGCGTACATCTGTGATTAGCCTTTAACTCGAGCCGTTTGCGTCCCGATATCTCGACATTTTAGAGCTATGACAACACAGCTTACCAGCGAGCAATAAAACTAGTCAACTAACATGACCTAGTTATTTGCATTTGCTCACGTCGTGTGTTGCCTCTGCGTGCTTACATGAGGGGCGGAAGCTAGTCGCGGCGGCCATTTTACAGCTAGTTAGCTCTTCCAACCTCTGGCGCACAAGATGCCCACCGTTAAACGCCTTGTATTTTCTCCAAGCTGTCTCTACGTAACTTTGCGGCACTAAGACGTGCAGGACCGATCCTGACTCGAGAGCTTACTGAGCCTGCAACGGGCATCCTTTCACATTTCTTTGCGGGAAAGCGGGGCTCGTAGAGCAACGCTAAGTTTCACTTAACCGGGAAGACGGAAGTCGTCAGGCTGGAGTGCGTCCTGATGGCTGAGTCAGAGACTGACTGTGACACACCAGGTCTCGATACGTTGGGATCTGAGTGTGTCATCGCCCATACGCAAGTCGGTGACTTGCATTATGGTGCGGAAACCGAGATTATGACTCAGGAGGACAAAAGACTTGACCTGGAGGCCATTCACGGTGATTTGGGGGCAGTGACCTGTGTGGATGTGGTAACCGAGACGGACCATGACTACATTAAATCAGAAATACACCACgatcatcatcattatttcaGCAGCGCAGAAATCAAAGGCAATGAGCATTTGCTCGGTGAGGTGCTGTTAAAGACGGAAATAGGTGGCGGAGAACATATCGTAAAGGTGGAGTCTGACCATGGAGGAGAGCTTACAGTAGAGTCAGAGAATGGCGTTATCATCCACGAAGCCCATGGTCTGCAATGCAGCGAGTGTGGTGAGATTTTTGGCTGTATGTCTGATCTGCACGAACACTTTGAAATCCACAAAGCCACTCATCCCTATATTTGCGTCCACTGTGGTGAGAGCTTCGCTGTTGAAGCCAGCCTAAGAAGTCACATGAGGATTCACATGAAAGAGAAAAGTTATACCACTGGTCTTGAGATGGTTGGTAAAGGAGTCATTGACGCATTCAACTTGAAACCCCATCAGATGATGCACTCTCCTGAAAAGCCGCACAGATGTTCAGAGTGTGGCAAAAGCTTTGCCGCGGCCATCACTCTACGGGAGCAcatgaaaatgcattcagatgACAAACCCTACAAATGCACCCAATGCCGAAAAAGCTTTGTGCGCAGACGCCATCTGAAAAAACATCAAGAGCTGCATGCCCACGATAAGCCCTTTACCTGTCTCCAGTGTGGTAAAGGCTTTACGACGGCTTCCAATCTCAAACAGCACCAGAAGACTCATGCTGGTGAAAAGCCACACAGGTGCACCCAGTGTGGAAAGTGTTTTGCGGCAGCAGCCACATTAAGAGAGCATCAGAGAATCCACTCAGGGGAGAAGCCCTACAAGTGCACCCAGTGTCGGAAGAGCTTTGTCAGGAAACGCCACCTCAAGAAGCATCAGCTGGTCCATCAGGGCGGAAAGCCCTACCGCTGCTCTCAGTGCGACAAGGGTTTCAACCATTCTTCTTCCTTGTCTCGACACCACAAGGTCCACCTGGAGGCCAAGATGTACGCTCAGGCGGATAAGGATTTCCCCTTCGATACTACGCTGAAGAGGGGAATGCACACAGGTGAAAAGCCATACAGCTGCAACCATTGTGAGAAAAGCTTCAATCACTCGTCATCGCTATCCAGACATCAGAGGACTCATTCTGATGGAAAGTCCTACACCTGTGCTCAGTGTGGGAAGAGGTTCAATCATCCCTCCTCTCTCGCAAGACACCAGCGGGTTCATTTGGAGGATAAGGCAACTTATAGCGCTATTGCAACAGGAAAGGGATTCCCCCACACTACCATCTTGAAACAGAGAATCCTTCAGAGTGAGAAACCATATAGGTGCGCTCAGTGTGGAAAGGGTTTCAATCATTCGTCTTCTCTGTCTAGGCATCACAGAATTCATATTGATCAGTAAGCCTGCTTTCCTCTCCCCGCAAGTGGTGTGCTACCATTCATCCCATGATTCAGGCCAGCTTGTAATGTTAAAGAGTTTGGCAGAAGATTCAAGAAAATCCAGAGAGTCGGCGTGGACCTGCTCTGAGGGAACTTATGAAATCAAGTCCTTTTGACTTTTTAAGAGCAATGAAATTCAATTAGGTATGATTGACACTGAAATCTCCTGTGTAATGTTCACATGACTAGATGCATACATGTCATTCTGCAACATAGTGTGGGATTAAATCTTCCATCATCACTGACTTGTGCTTTAAGTGGGAAATCTGGCACAATCTTGAACTGAGTATTAGGTCAAGTTGGTTTTGAATGGAAGATAACTAAGCAAATGAGTCTAGACACAACTATTCACTCCCCTAGTTTGTATCTTTTACCCATCTCTGTATCATTCATGGGTTGAGAAACTGGTATCACgtgtaaatatgttttccttttatATAGATGTATAGGTGAGTAGTGTGCTGTTCTTTTCTGAAAAAATTGAGCATTTTTTGATGTACGATACAGTTAGTCTTATATCCATCTCTTGTAGGTGAAGTGGGATGGTGCTTTTAGGGGATGACACTAGTTTTGAACAAGCTGTCCTATATAAAGGCTATATGAATTATAAACCCTTTATGATACATACAACGGAGTCTGCAACCTAAAGCAGCATGTTAACTTGACTAACACCTGGAAATTTTCTGAAAACAGCCGCACAAAGAGCGAGGGGCAAGAAACGCCTTGTCATCAAGTCAAGTTGAGAAAAGGAGATCTTGATCATAAAAGGTCAACCCAACAAAATGAGATGGCGTATACGTTCTGTTGGGAAATTTGGTTCACTTTTCTTGTTGCTAGTTTTCAACACAACTTAATTGTACAGctaattttgttatattatgcAGACTTGGTACAGCCTAAGCATTCCCCTGAATGACTTCAGTGCTTCTCCCTGCTAGCCACCTGTGTTACCAATGACTGACTGTGCATTGAAAATTTTCCCAGTCACTGCTCAAGTCAGACAGCAATGTATAGCATTTAGTTGTATTCTGGATACGTTTTGCAGAGTatcaacatttaataataataataatagattgtGTATACtttaatgcaaatacaaaatatagcTTGCTTTTTTGAaatttgtttggttgttttgtttttttttcccacctttAAATTCCATGGGTTTGTGCTTTCTATTTACAGTTCTGTGTATGGAGAAAATCTTTTACAAAcggatgtatttttttaataaggtttGAGTAATTGAAAGGGAAATGAAAGGAATACTGTTTTTATGGGAGTGAACATTGTATCAGAActattctctttcttttccattGGATAACAGTTGTGCTTCATCACGTAGCATAGGTTTATTCATTGTGTTAGTTAGGTGCCTTATTGCATGCCATGTAGAAATGTATGCCGAGCTGTAATAGAAAAAATAAGGTTTTGGCTCCTGctcccttttttgttttttcgcATACTaatcaatgttttaatttgatttattattattttttttgcttctctGTACATGAATGTTTACACTGTTACTTCTGTCTTTTAATTTACTTGTCTGTCAACAAGCCTCTTTGTAGAATGGAGGTTGAAGGAAGTTACAATGCCATTGATCCATATGTTGATTGCCCTCTATAGTGGTCAATTCTTGTCCTATTTGTCTATTCCCCCGACTTTGAGTGGCTCACATATATGGATAAATAAAGGTTGTTGACTATCAACAAGttcaaa

Function

symbol description
si:ch211-198a12.6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in brain; immature eye; midbrain; and otic vesicle. Orthologous to human ZSCAN2 (zinc finger and SCAN domain containing 2).

NR:

description
zinc finger protein 883-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255185.1 False 3655 mRNA 0.43 2 1269936 1275415
XM_043255186.1 True 4100 mRNA 0.44 2 1270332 1275415

Neighbor

gene id symbol gene type direction distance location
stox1 stox1,LOC107747447,LOC107690171,LOC107678608,LOC107708457,LOC107576485 coding upstream 1878 1253524 ~ 1268058 (+)
ccar1 ccar1,LOC107747452,LOC107690173,LOC107708455,LOC107582549 coding upstream 23965 1224840 ~ 1245971 (+)
zgc:110319 zgc:110319,LOC107690174,LOC107582515,LOC107747453,LOC107708456,LOC107678512,LOC107589524 coding upstream 45822 1221155 ~ 1224114 (+)
eif4e1c eif4e1c,LOC107582514,LOC107690176,LOC107708453,LOC107747456,LOC108444323 coding upstream 55892 1208243 ~ 1214044 (+)
tet1 LOC107582512,LOC107690175,LOC107747454,LOC107708452,LOC107589523 coding upstream 64400 1171856 ~ 1205536 (+)
LOC122356482 LOC107690165,LOC107678593,LOC107747448,LOC107678592,LOC107708458,LOC107708381 coding downstream 1110 1276525 ~ 1277325 (+)
tlr4al LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986 coding downstream 5491 1280906 ~ 1283687 (+)
LOC122356446 LOC107690199,LOC107678592,LOC107708458 coding downstream 13012 1288427 ~ 1291014 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding downstream 16630 1292045 ~ 1296933 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding downstream 23819 1299234 ~ 1327785 (+)
G89754 NA non-coding upstream 105548 1080132 ~ 1164388 (+)
G89775 NA non-coding upstream 120833 1148271 ~ 1149103 (+)
G89764 NA non-coding upstream 123076 1129089 ~ 1146860 (+)
G89721 NA non-coding upstream 240641 1026973 ~ 1029295 (+)
G89719 LOC108444242,LOC103386924,LOC107747461,LOC107690181 non-coding upstream 243269 1024573 ~ 1026667 (+)
LOC122356494 NA non-coding downstream 23170 1298585 ~ 1299232 (+)
G89821 mat1a,LOC107582520,LOC107570529,LOC107733750,LOC107678534,LOC107708460 non-coding downstream 56423 1331838 ~ 1335134 (+)
G89842 NA non-coding downstream 170777 1446192 ~ 1447605 (+)
G89843 NA non-coding downstream 173631 1449046 ~ 1449943 (+)
G89844 sema4ga,LOC107733683,LOC107708465,LOC107678493,LOC107690158,LOC107582524 non-coding downstream 174950 1450365 ~ 1450830 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 129741 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 258689 1008268 ~ 1011247 (+)
G89631 LOC107698159,LOC107747466 other upstream 592335 380964 ~ 677601 (+)
dlg5a dlg5a,LOC107708441,LOC107698145,LOC107678499 other upstream 893365 323731 ~ 376571 (+)
fignl1 fignl1,LOC107721231,LOC107698153,LOC107678605 other upstream 1033043 190797 ~ 236893 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 66681 1342096 ~ 1345863 (+)
G89846 NA other downstream 193990 1469405 ~ 1470135 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other downstream 305943 1581358 ~ 1613330 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 564920 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 596769 1872184 ~ 1872591 (+)

Expression


Co-expression Network