LOC122356461 (cox15,LOC107753717,LOC107582029,LOC108437854,LOC108260879,LOC102219127)


Basic Information

Item Value
gene id LOC122356461
gene name cox15,LOC107753717,LOC107582029,LOC108437854,LOC108260879,LOC102219127
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2217871 ~ 2224453 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255200.1
gaagaagaagaagaagaagaagaagaagaagccgCCGAAGGAGAGCATGGGATGGGAGCTATGTGTGGTTATGTTGGTTACGTGACTAgtaatttcataataatttcaTAAGAGGAGAGGTTTATCTGCTAGACTAAGTCATGGTGCTGCCGGTTTTAAGACTCGTCTTGTCGTGTCGCTGTCAAACCGCTGCGAGACGTTTACAGCAGATCCAGagaCAGTGTCTGCTGAGGAGAGGACAGAGCACGCTGAGGACCACAGCAGGACCGGCGTGGGTCAGGACGGCGGCCGGCGAGCGAGTGCTGGGCCGCTGGCTGCTGGGCTGCAGTGGGCTGGTGCTGGGCGCCGTGGTCCTGGGAGGGGTCACCAGattgACAGAGTCCGGCCTGTCGATGGTTGACTGGCACATAGTGAAAGAGATGAAGCCGCCGCGGACTGAAGCCGAGTGGGAAGAGGAGTTCTCCAAGTACAAACAGTTCCCAGAGTTCAAAATCATGAATCACGACATGACTCTGACGGAGTTTAAGTTCATCTTCTACATGGAGTGGGGTCACCGCATGTGGGGGCGGCTGGTTGGGTTAGCGTACATACTTCCCACGGCCTACTTCTGGAAACGAGGATACTTCAGCCGCTCCATGAAGCCTCGTGTTTTGGGTCTGTGCGGCTTTGTCGTCTTCCAGGGTCTTCTGGGATGGTACATGGTGAAGAGCGGTCTGGAGGAGAAGAGCGAGTCGTACGACGTTCCCCGTGTCAGTCAGTACAGGCTGGCGGCTCACCTGGGCTCCGCTCTGCTGCTCTACTGCTCCAGTCTCTGGATGGGACTCACTCTCCTGCTGCCCGCCAACAAGATGCCTGACAGCAGGAGTTTGCTGCAGTTAAGGAGGTTTGCCAAGGTCACGGGCGGTCTGGTCTTCCTCACGGCTCTCTCTGGCGCCTTCGTTGCTGGACTGGATGCGGGTTTGGTTTATAACTCTTTCCCAAAGATGGGCGAGCGCTGGATCCCTGATGATCTTCTGGCTTTTTCCCCATCTCTCAAGAACGTGTTTGAAAACCCCACCACGGTTCAGTTTGACCACCGTATTCTGGGCATCGGCTCACTGACAGCCATCTCAGGACTCTACCTGTTCTCTAGACGGGTCCATCTACCCAGACGAGCGAAGATCGCCATTGGCTGTCTCACAGCCATGGCCTACACACAAGTGGTGTTGGGCATTAGTACCCTGCTGCTCTATGTTCCCACCCCGCTGGCAGCCACACATCAGTCCGGGTCAGTGGCACTGCTCACCTTCGCCATCTGGGTCTTGGCTGAGCTACGAAAGGTGgtcaaataatgtttatttcctgcagtatattttaataaatcatgctTTAGGCAAGCtacatcttttgtgttttttaaagcattggTTTATATGAAGTTCTTTTAGAACTGTATGTGTGAAATAcattgaagtatttttttagtttttaaacctGTTTGATTTATGCAAAGAACGTTTTTACTCGATGACtgcttatttaaaatcaatacagttatcatctgtgttttctgttaattttaTGAGGATATTCATCCAGAGTAAGAGTGAAGTCATTTTcacatattacaaatattatggCCTGCTGAAACTACTGATAAGTATACTGAAACAAGAATTGTACTTTTGATTTGTTGTCATGAGCAACATCAcacttaattcatttaaatgattatattaaataaagtgatttcttttgaacagtt
>XM_043255201.1
agaagaagaagaagccgCCGAAGGAGAGCATGGGATGGGAGCTATGTGTGGTTATGTTGGTTACGTGACTAgtaatttcataataatttcaTAAGAGGAGAGGTTTATCTGCTAGACTAAGTCATGGTGCTGCCGGTTTTAAGACTCGTCTTGTCGTGTCGCTGTCAAACCGCTGCGAGACGTTTACAGCAGATCCAGattgACAGAGTCCGGCCTGTCGATGGTTGACTGGCACATAGTGAAAGAGATGAAGCCGCCGCGGACTGAAGCCGAGTGGGAAGAGGAGTTCTCCAAGTACAAACAGTTCCCAGAGTTCAAAATCATGAATCACGACATGACTCTGACGGAGTTTAAGTTCATCTTCTACATGGAGTGGGGTCACCGCATGTGGGGGCGGCTGGTTGGGTTAGCGTACATACTTCCCACGGCCTACTTCTGGAAACGAGGATACTTCAGCCGCTCCATGAAGCCTCGTGTTTTGGGTCTGTGCGGCTTTGTCGTCTTCCAGGGTCTTCTGGGATGGTACATGGTGAAGAGCGGTCTGGAGGAGAAGAGCGAGTCGTACGACGTTCCCCGTGTCAGTCAGTACAGGCTGGCGGCTCACCTGGGCTCCGCTCTGCTGCTCTACTGCTCCAGTCTCTGGATGGGACTCACTCTCCTGCTGCCCGCCAACAAGATGCCTGACAGCAGGAGTTTGCTGCAGTTAAGGAGGTTTGCCAAGGTCACGGGCGGTCTGGTCTTCCTCACGGCTCTCTCTGGCGCCTTCGTTGCTGGACTGGATGCGGGTTTGGTTTATAACTCTTTCCCAAAGATGGGCGAGCGCTGGATCCCTGATGATCTTCTGGCTTTTTCCCCATCTCTCAAGAACGTGTTTGAAAACCCCACCACGGTTCAGTTTGACCACCGTATTCTGGGCATCGGCTCACTGACAGCCATCTCAGGACTCTACCTGTTCTCTAGACGGGTCCATCTACCCAGACGAGCGAAGATCGCCATTGGCTGTCTCACAGCCATGGCCTACACACAAGTGGTGTTGGGCATTAGTACCCTGCTGCTCTATGTTCCCACCCCGCTGGCAGCCACACATCAGTCCGGGTCAGTGGCACTGCTCACCTTCGCCATCTGGGTCTTGGCTGAGCTACGAAAGGTGgtcaaataatgtttatttcctgcagtatattttaataaatcatgctTTAGGCAAGCtacatcttttgtgttttttaaagcattggTTTATATGAAGTTCTTTTAGAACTGTATGTGTGAAATAcattgaagtatttttttagtttttaaacctGTTTGATTTATGCAAAGAACGTTTTTACTCGATGACtgcttatttaaaatcaatacagttatcatctgtgttttctgttaattttaTGAGGATATTCATCCAGAGTAAGAGTGAAGTCATTTTcacatattacaaatattatggCCTGCTGAAACTACTGATAAGTATACTGAAACAAGAATTGTACTTTTGATTTGTTGTCATGAGCAACATCAcacttaattcatttaaatgattatattaaataaagtgatttcttttgaacagtt

Function

symbol description
cox15 Predicted to enable oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor. Predicted to be involved in heme A biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in Leigh disease; fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 2; and hypertrophic cardiomyopathy. Orthologous to human COX15 (cytochrome c oxidase assembly homolog COX15).

NR:

description
PREDICTED: cytochrome c oxidase assembly protein COX15 homolog

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006784 heme A biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K02259 COX15, ctaA; heme a synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255200.1 True 1744 mRNA 0.49 9 2217871 2224453
XM_043255201.1 False 1572 mRNA 0.47 8 2217888 2224453

Neighbor

gene id symbol gene type direction distance location
abcc2 abcc2,LOC107758572,LOC107582114,LOC107654078,LOC107558209 coding upstream 851 2199984 ~ 2217020 (+)
LOC122356458 NA coding upstream 22684 2186258 ~ 2195187 (+)
LOC122356476 LOC107582116,LOC107753727,LOC107699114,LOC101886535,LOC107558210,LOC107709369 coding upstream 42438 2166620 ~ 2175433 (+)
wu:fc17b08 LOC107705013,LOC107565911,LOC107699137,LOC107742810,LOC107753730,LOC107753729 coding upstream 123843 2076173 ~ 2094028 (+)
degs1 degs1,LOC107753721,LOC107699139,LOC107742811,LOC108412154 coding upstream 158305 2054989 ~ 2059566 (+)
nrxn1b LOC107654084,LOC107582113,LOC107699145,LOC107758571,LOC107558206,LOC107738897 coding downstream 90053 2314506 ~ 2424731 (+)
LOC122356459 LOC107715620,LOC107654086,LOC107727476,LOC107571253 coding downstream 204307 2428760 ~ 2432683 (+)
LOC122356456 LOC107710218 coding downstream 221597 2446050 ~ 2450413 (+)
tmem14a zgc:163080,LOC107751370,LOC107701972,LOC107579763,LOC107597714 coding downstream 253140 2477593 ~ 2478849 (+)
polh polh coding downstream 257749 2482202 ~ 2488135 (+)
G90094 NA non-coding upstream 142043 2075552 ~ 2075828 (+)
G90089 NA non-coding upstream 164025 2053597 ~ 2053846 (+)
G90088 NA non-coding upstream 165566 2052035 ~ 2052305 (+)
G90041 heatr5b non-coding upstream 182034 2035337 ~ 2035837 (+)
G90034 heatr5b non-coding upstream 183304 2017183 ~ 2034567 (+)
LOC122356498 pim3,LOC107732271 non-coding downstream 14489 2238942 ~ 2240047 (+)
G90206 NA non-coding downstream 61072 2285525 ~ 2286244 (+)
LOC122356495 NA non-coding downstream 79032 2303485 ~ 2304076 (+)
LOC122356488 NA non-coding downstream 85428 2309881 ~ 2311135 (+)
G90214 NA non-coding downstream 98156 2322609 ~ 2322964 (+)
cutc cutc other upstream 37042 2176009 ~ 2180829 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other upstream 51843 2153422 ~ 2166028 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other upstream 220561 1989872 ~ 1997310 (+)
G90010 LOC107676803 other upstream 345280 1872184 ~ 1872591 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other upstream 375763 1840335 ~ 1842108 (+)
LOC122356772 pim3,LOC107732271 other downstream 40293 2264746 ~ 2284807 (+)
G90230 NA other downstream 245492 2469945 ~ 2470381 (+)
LOC122356072 znf318,LOC107739464,LOC107564219,LOC107728066 other downstream 758106 2982559 ~ 3010641 (+)
LOC122356070 dnph1 other downstream 827529 3051982 ~ 3278260 (+)
G90350 dlk2,LOC107696386,LOC107669558,LOC107559779,LOC107728069 other downstream 950282 3174735 ~ 3285406 (+)

Expression


Co-expression Network