cfap36 (cfap36)


Basic Information

Item Value
gene id cfap36
gene name cfap36
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1750546 ~ 1761499 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255205.1
GCCCGCAGTGACGCAGCGGTTGCTACGGCGGCAGATTATGTCGCGCACATCCGGGGTGTCCGCGGCTCGCGCGCTCGCTCGCTCGTGTCGTTAACGCTCTTGTCTCCGCGGGCGAGGAGGACTGACGCGCGCGGCGATGCGAGCGTCTCTCCAGTGATCATGGCCGATGACAGCGAGTGGGTGCTGGAGAGCGTCGCGGGGTACCTGGGCAGCCCGGACTGGCTCGTCCCGCTGGCCGACTTCATGGAGAACAAATGCTCAGtgtttgacGACGAGGACGAGAACAAGCTGACGTACACGGAGATCCATCATCAGTACAAGCAGCTGGTGGAGCGGCTGCTGGAGAACTACATGCAGGAGGTGGGCATCAACGAGCAGCAGTTCCTTCACGCCTGCTCCTCCTTCAGCAAGACCAAGACCCTACAGGCGGTTTTCCAGCCGGTTCTCGCTACAGATGATTTTCAGATGTTTCGCTCTTTGATGGTCCAGAAGAACATGGAGCTTCAGCTGCAGGCCCTGCACGTCATCAAAGAAAGAAACGgagggCTGCCCGAGTGTCTGACGGACGGCGTGGACGTCGTGAGTGAACTCGAGCAGCAGGAGATGAAGATTCTTCAGGAGGTTCTCAAGAGGTCAAAGGAGGAGTATGATCTGGAGATGGCACACAGGGTGACGGAGACGGAGACGGAGGAGCAGGCCTCCACCTCCAGCAGTCTGTCTGAGACTCCTCCGTGTGATGCTGTGAACCCACCAACCAACACTACCAACGGTACCACAGACACTAAAGAGATGAAGGAGCCGGAGTCTGCAGCCGTCAGGAGTTCAGCTGCAGCCCCACCgtcgtGTAAAAGTAAGTCTCTTCCTGCAGTGAAGGTCCCTGTCAAGGGTTCAGTGTCTGAGCACACGCCGAGCTCAGAGACTCAGAGAGACCCCCGAGCGgaTGAGGAGGCGTTACAGCAGCGCTCTGAATATCTGAAGCAGCAGAGAGATAAACTGCAGGCTCTGAAGAGAGATCAGACCCAGAAGAGCCCATCTGATGCTCCTCCTGCGGCCCCGGGGCCCAAACCCCCTGCACAGGAGATCTCTgtggaagagaagaagaaattgCAGAAAAGAAAACACCTGGCAGAGAAGCTGAAAGAAGAAGTGATCAAGAAATGATCAGAGTTTATCTGCTGGAAAACGCGGGAAAGAAAGACATGGATGAATCCAGTTTtgtatattgtttaatttatatatttttttatgtacctGTAGGTCTGCCAAACAGAAATTAGCCGGTGATCTCACATTACTCCACACTGTAAACCTCAGCAGGTTTAGAGGAGAAGACTGAACCCAAACCTCATTGCATGATCACTCTCCTGGATGCAGTGTTTGAACGTCCGTCCGTCTTCAACTCTTTCCTCGCTGAATTATTGTTACGCATCTTGGGGACGCTCACGTTATACATATATTGATATATGCTCATATTCTACTGTGTAATTTCATGAAGTGTGGACAGATGTTTTATGAAATTACCAAATAAAGTATGATTTTTAGTCATTAGAA

Function

symbol description
cfap36 Predicted to be located in cytoplasm; motile cilium; and nucleus. Predicted to be active in axoneme and ciliary base. Orthologous to human CFAP36 (cilia and flagella associated protein 36).

NR:

description
cilia- and flagella-associated protein 36 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255205.1 True 1551 mRNA 0.52 10 1750546 1761499

Neighbor

gene id symbol gene type direction distance location
LOC122356447 pnpt1,LOC106607983,LOC107657222 coding downstream 3419 1737219 ~ 1747127 (-)
ppp4r3b ppp4r3b,LOC107695195,LOC107575844,LOC107571561 coding downstream 14013 1728223 ~ 1736533 (-)
ccdc88ab ccdc88a,ccdc88ab,LOC107744066 coding downstream 25240 1692424 ~ 1725306 (-)
rtn4b rtn4,LOC107701442,LOC107695192,LOC107749683,LOC107571557,LOC107570318 coding downstream 73801 1663428 ~ 1676745 (-)
ppp1r21 ppp1r21,LOC107570315,LOC107749695,LOC107695191,LOC107683724,LOC107690530 coding downstream 89715 1646587 ~ 1660831 (-)
LOC122356460 LOC107695186,LOC107565905,LOC107709466,LOC107571067,LOC107693776 coding upstream 18482 1779981 ~ 1805546 (-)
slc30a6 slc30a6,LOC107565903 coding upstream 66584 1828083 ~ 1839665 (-)
chs1 chs1,LOC107565902,LOC107693785,LOC107571073,LOC107725003 coding upstream 80808 1842307 ~ 1852973 (-)
ddx21 ddx21,LOC107680284,LOC107709417,LOC107693788,LOC107725010,LOC107565900 coding upstream 103032 1864531 ~ 1871277 (-)
si:ch1073-291c23.2 NA coding upstream 112120 1873619 ~ 1877710 (-)
G90053 NA non-coding downstream 67471 1682024 ~ 1683075 (-)
G90052 NA non-coding downstream 70635 1679111 ~ 1679911 (-)
LOC122356491 NA non-coding downstream 72420 1677535 ~ 1678126 (-)
G89918 NA non-coding downstream 242838 1504790 ~ 1507708 (-)
G89919 NA non-coding downstream 246407 1503350 ~ 1504139 (-)
LOC122356490 NA non-coding upstream 8813 1770312 ~ 1775927 (-)
G90064 NA non-coding upstream 16965 1778464 ~ 1779529 (-)
G90074 NA non-coding upstream 109882 1871381 ~ 1871732 (-)
G90076 NA non-coding upstream 125907 1887406 ~ 1887609 (-)
G90078 NA non-coding upstream 145817 1907316 ~ 1907538 (-)
LOC122356758 ccdc88a,LOC107571560,LOC107701441,LOC107570323,LOC107695193 other downstream 58192 1684449 ~ 1692354 (-)
LOC122356439 LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986,LOC107708380 other downstream 193499 1554230 ~ 1557047 (-)
si:dkey-228d14.5 si:dkey-228d14.5,LOC107747455,LOC107582513,LOC107708394,LOC107589525,LOC107678589,LOC107690177 other downstream 462264 1212870 ~ 1288282 (-)
lrmda c13h10orf11,cunh10orf11,c3h10orf11,cssa18h10orf11,LOC107747465,LOC107678567,LOC107708444,LOC105909757,LOC103041229,LOC107582503 other downstream 819541 687409 ~ 931005 (-)
LOC122356753 LOC107708390,LOC107678530,LOC107589588,LOC107698143 other downstream 1511187 223958 ~ 239359 (-)
G90161 tp53bp2,LOC107582030,LOC107705014,LOC107742808 other upstream 390338 2151837 ~ 2245078 (-)
G90304 NA other upstream 822697 2584196 ~ 2585331 (-)
G90311 polh other upstream 864829 2626328 ~ 2627157 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other upstream 1228919 2990418 ~ 3244896 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other upstream 1519838 3281337 ~ 3298549 (-)

Expression


Co-expression Network