foxg1d (foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822)


Basic Information

Item Value
gene id foxg1d
gene name foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1815818 ~ 1818092 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255213.1
AACCCCTTAATTAGTCAATTTCTCCTCGTCTCCTCGCGTAGGATGTCCTGACAGCGCCTGGCCTTTATTtctcaaaccaaaaaaagtttgatACAGCGACATGGATGGGAAAGAAGCAACGGCGCTCCAAAAGCTGAGCTCCTTCAGTATCAAGAGTCTGCTGCTTCCGTCCAGACACGACAGACACGACAGACACGACACGGCGCGACCGGAGGAGCCCGAGCCGCCGCCGCCGGAAGCCCGAGGACCCGCGGAGCCCGCGGAGAAAGTCAAAGACgccgaagaagaagaagaagaagaagaggaagaggagccGAGCAAAGCGGCGAAGCTCGACAAGCCGCCGTTCAGCTACAACGCGCTCATCATGATGGCCATACGACAGAGCCCCGAGAAGAGACTGACGCTGAACGGGATCTACGAGTTCATCATGAAGAACTTCCCGTTCTACCGGGAGCACAAGCAGGGCTGGCAGAACTCCATCCGACACAACCTCAGCCTCAACAAATGTTTCGTGAAAGTGCCGAGACATTACGACGACCCCGGGAAAGGAAACTACTGGATGCTGGACCCTTCGAGCGACGACGTGTTTATCGGCGGGACGACCGGGAAGCTCCGGAGACGCTCGGCCACGTCCCGGGGCAAGCTGGCCATCAAACGAGGACTGCGCTTTTCCCCGCTGGGTTTGGGAATAAACGAGACGCCCAATAATCCTCTGTACTGGCAGATATCGCCGTTGCTGTCGTTACACCCGCCGCACTACAGCGGCGCGCCGCACGGCTTTCTGAGTCAGGGACACGGGTACGGTTCTTTCTCCGAGCCGCGTCCGGTTCTGGGGCTCACGAACTCTTACGGGATGGGCTCGCTGTCGGTCCCGTCCGGTTACCTGCCCCCGCCGGCCCTGCAGAGCGACTCCCTGAGGAGCACGCTGTCGTTCCCGCCCGCCGTTTCCGGTGGCTTACCTGGAGTTTTGTCACACCACGACAGAGTCTCTCCAGACTCGTTTTAAACCGACGGGGAATGATTTCTAATACTTCCGTTCAGTTTCGAGCAGGTCGTGTGCTGACGAGCGGAACCGGAGCTCGTGACACGCCGTTAACGTGCTCGGAAAGCGCGGGAGTCACGTAACGCGATTAAACTCCACACTATTTATATGATGTCCGAAGTTAATTTATGTCATATTTCTGAACTGTGTTTGATGTCGTGTATCTGTCCGGTCATCATTTAACCGGTAAGTGACCGAAGCGGAGATCTTCAGGgggttatttattttctttcctcaGGTCCCGCTCCTCGAAGCGCGCGCCGCGTCTTTCCCTTCTGTTTGAACTCAATAAAGACTCCTGAGAGACCGGACCAGGACGCGTTTAGGTTTAGCTGCActcaaatgattttaaaaagacgAACGAATTAACGTCGAGTTTAAAAACACGCGTCGGACCCGTAAACGAACACATTAGAATTAAACTCTATCCTGGACTCCACGAGCTGAGAGCGCGCGCCTgactcacataaacacactttcacacCAACATCCGGTGAAGAGGTGCATCGGTGAAAGACCAGGGGGTCGCTTTATCACTTTACAGCTGTGcacttgaaaaaaaagagagtttcTTTGAGAAGAACTGGGAAAAAGCGCTCTTGTGTTTACAGCGTCGGGACTGCtaataataaagtgttttgtcaaaatgtagaaaaaaaggGATTTCTTTTATAGTCTCTTTTTATGTAAACTTACAATGCgaacaaatttaattaaaaatgtcttcaagtAGTTTTGAAGAGATGATTGTGAATAAGAGCGAGGTGTGAGATCTGCCTCTAAGCCTCCTCACATCAACACGAGTAATAATACTAGAACtagaacaaaactaaaactagaTCATCTGGGGAAGAACATTCATCTGTTTATAAGAGAGAGACGGGAAGAAGTGAACGTGCTcgaaaaatataaacatatttaaacaaaaaaaaaaaacccaggtCGGAAGGGTTTgggtgtaaaaacatttcaagccGCCTAGACCTTTTTATTGAGTTAAAGTATgggataatataataaaaacgaaCTGTTAGGCTATATATTGTtctgtttattgttattgtttgattgatatttattcatttattgtttgttttctatagGCTAGATATATCTGTTTTAGAAGAGCAGCTTGAAGAAGGGACTGAggaataaaagcagaaaatagaGCTTTATAAACATCAACATTTCattgaaataattatatttataaattaaatcattattgaa

Function

symbol description
foxg1 Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription, DNA-templated. Predicted to be located in nucleoplasm. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: forkhead box protein G1-like

GO: NA

KEGG:

id description
K09385 FOXG; forkhead box protein G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255213.1 True 2275 mRNA 0.48 1 1815818 1818092

Neighbor

gene id symbol gene type direction distance location
LOC122356760 pim3,LOC107732271 coding upstream 45592 1768733 ~ 1770226 (+)
prorsd1 LOC107701441,LOC107571560 coding upstream 130639 1683250 ~ 1685179 (+)
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 437865 1357268 ~ 1377953 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding upstream 488033 1299234 ~ 1327785 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding upstream 518885 1292045 ~ 1296933 (+)
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding downstream 42839 1860931 ~ 1864358 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 221390 2039482 ~ 2046270 (+)
degs1 degs1,LOC107753721,LOC107699139,LOC107742811,LOC108412154 coding downstream 236897 2054989 ~ 2059566 (+)
wu:fc17b08 LOC107705013,LOC107565911,LOC107699137,LOC107742810,LOC107753730,LOC107753729 coding downstream 258081 2076173 ~ 2094028 (+)
LOC122356476 LOC107582116,LOC107753727,LOC107699114,LOC101886535,LOC107558210,LOC107709369 coding downstream 348528 2166620 ~ 2175433 (+)
G89957 NA non-coding upstream 87667 1701578 ~ 1728151 (+)
G89981 ccdc88a,LOC107570323 non-coding upstream 99934 1711945 ~ 1715884 (+)
G89974 NA non-coding upstream 122697 1692435 ~ 1693121 (+)
G89973 ccdc88a,LOC107570323,LOC107695193 non-coding upstream 123407 1690146 ~ 1692411 (+)
LOC122356501 NA non-coding upstream 135948 1678260 ~ 1679870 (+)
G89997 NA non-coding downstream 19887 1837979 ~ 1839659 (+)
LOC122356489 NA non-coding downstream 43379 1861471 ~ 1862276 (+)
G90006 NA non-coding downstream 48055 1866147 ~ 1869613 (+)
G90009 NA non-coding downstream 53598 1871690 ~ 1871892 (+)
G90011 NA non-coding downstream 55123 1873215 ~ 1873444 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other upstream 202488 1581358 ~ 1613330 (+)
G89846 NA other upstream 345683 1469405 ~ 1470135 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 469955 1342096 ~ 1345863 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 675623 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 804571 1008268 ~ 1011247 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 22243 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 54092 1872184 ~ 1872591 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other downstream 171780 1989872 ~ 1997310 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 335330 2153422 ~ 2166028 (+)
cutc cutc other downstream 357917 2176009 ~ 2180829 (+)

Expression


Co-expression Network