prorsd1 (LOC107701441,LOC107571560)


Basic Information

Item Value
gene id prorsd1
gene name LOC107701441,LOC107571560
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1683250 ~ 1685179 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255222.1
ATAGTACAGGGATATCACCTAGTAAAGAGAGTCGAGCACCCTGAGGTGTGTTTGTGAGGAGTGTGCAGCAGGGAGCGCTCTTGGTCAACCTCACCCGGACCGGAAGTGACGTCCTCTGCCGGAGGAACGCGgaggaacatttaaaaaatactgccGCTCTCCCAGGAATTATCTACATTTAACAATTGCTGTTTTAATGTAGGCGTGTTTTAATCATAGTTTCAAAAACTTTCAAGAGTGTCCCTTTCTTAATAAAATCACCCAAACCGGAATGAAAAGGTAGATGAGGACGTGGCTGTACTCTGACCAATCACAGCCGTCTGCTGCGAGGCTGGACCAATCACAGCCCAGTGCGCTGTCACCACACGAGTCGGTTAGAGAGCTGTTCTTGCTTTCGATGGCGTCTGTGGAGCTCAGGAAGAGTCTGGAGGAGCTTCTCCAGCGACTCGATATCGACACGATCTGCGTCGAGCATCCCGAGgTGTTCACGGTGGAGCAGATGATGCCACACCTGTCTCACCTGAGCGGCATGGCCACTAAGAACCTGTTCCTGAAGGACAAGAAGAAGAAGCGCCTGTGGCTGCTGAGCGTGCGTCACGACCGCGAGCTGAACCTGAGCGAGGTGTCCAGACGTCTGGGGCTGGGAGCGGGGAACCTGCGTCTGGCAGACGAGGCCGTGATGCTGGACGCGCTGCAGGTGGGTCAGGGCTGCGCCTCGGCCCTCGCGCTCTTCTGTGACACCGACCGCAGCGTGACGGCCGTGCTGGACCGAGACCTGACCCACGGCGAGCACCAGCGCCTCTACTTCCACCCCATGACCAACAGCGCCAGCCTGGGCCTGAGACCGGACGACCTGCTGCGCTTCCTGACCGAGACCGGACACCCGCCCGTCATCCTGAGCTTCGACTGAGAGGACACACATCACCGCTCCAGGACACACAACACTGGTCTGACGAGGAGTGTTTTAAAGTCTAATTTAATCTGATTAGAAGTACTCCTCTGATCAGTTTTACCAGCTCTGTGTAACAAACATGTTCTCCTTGAGTGAGAATAAGACAGGCGTCGTGACGTTCATCACACTGATTTAATTTATGAAAAGAGGAATGAAGCGGTATGTGGCGTTCACACAGGAGTAACGCTGTCTTTtggcacacacacgcatgcgcacgcactctctctcacacacacacacacacacacacacacacacacaca

Function

NR:

description
PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like isoform X1

GO:

id name namespace
GO:0006450 regulation of translational fidelity biological_process
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255222.1 True 1215 mRNA 0.54 2 1683250 1685179

Neighbor

gene id symbol gene type direction distance location
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 305297 1357268 ~ 1377953 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding upstream 355465 1299234 ~ 1327785 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding upstream 386317 1292045 ~ 1296933 (+)
LOC122356446 LOC107690199,LOC107678592,LOC107708458 coding upstream 392236 1288427 ~ 1291014 (+)
tlr4al LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986 coding upstream 399563 1280906 ~ 1283687 (+)
LOC122356760 pim3,LOC107732271 coding downstream 83554 1768733 ~ 1770226 (+)
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding downstream 130639 1815818 ~ 1818092 (+)
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding downstream 175752 1860931 ~ 1864358 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 354303 2039482 ~ 2046270 (+)
degs1 degs1,LOC107753721,LOC107699139,LOC107742811,LOC108412154 coding downstream 369810 2054989 ~ 2059566 (+)
LOC122356501 NA non-coding upstream 3380 1678260 ~ 1679870 (+)
LOC122356499 NA non-coding upstream 7915 1673723 ~ 1675335 (+)
G89931 NA non-coding upstream 17158 1591435 ~ 1666092 (+)
G89942 NA non-coding upstream 48660 1633664 ~ 1634590 (+)
G89815 NA non-coding upstream 120297 1562542 ~ 1562953 (+)
G89973 ccdc88a,LOC107570323,LOC107695193 non-coding downstream 4967 1690146 ~ 1692411 (+)
G89974 NA non-coding downstream 7256 1692435 ~ 1693121 (+)
G89957 NA non-coding downstream 16399 1701578 ~ 1728151 (+)
G89981 ccdc88a,LOC107570323 non-coding downstream 26766 1711945 ~ 1715884 (+)
G89997 NA non-coding downstream 152800 1837979 ~ 1839659 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other upstream 69920 1581358 ~ 1613330 (+)
G89846 NA other upstream 213115 1469405 ~ 1470135 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 337387 1342096 ~ 1345863 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 543055 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 672003 1008268 ~ 1011247 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 155156 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 187005 1872184 ~ 1872591 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other downstream 304693 1989872 ~ 1997310 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other downstream 468243 2153422 ~ 2166028 (+)
cutc cutc other downstream 490830 2176009 ~ 2180829 (+)

Expression


Co-expression Network