LOC122356482 (LOC107690165,LOC107678593,LOC107747448,LOC107678592,LOC107708458,LOC107708381)


Basic Information

Item Value
gene id LOC122356482
gene name LOC107690165,LOC107678593,LOC107747448,LOC107678592,LOC107708458,LOC107708381
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1276525 ~ 1277325 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255225.1
ACTTTCAAACAGTCTGGGTCATGAATGAACTGATGGAGAATCTGGAGAACGGTATACCACCTATTCAGCTTTGCTTTCATATGCGGGACTTTCAAGCAGGGAAGTCCATCGCCTCCAACATTATCGATGAAGGAATAATGGGCAGTCGTAAAATCATTGTGGTGGTGTCTCAACACTTCATTGATAGTGCCTGGTGTCGCTTTGAGTTTGAACTAGCTCAGTCTCGCTTTATGATGGAACGCAGTgccaacatcatcatcatcattctgGAAGATGTGGAAGAGAGGAGGACTAAGAAAGTGTTTGGACTTCATAAGCATCTGAAAAAGAACACGTACCTAAAGTGGAGCAGAGACCCTTTGAGAAACATGAGGTTCTGGATACGCCTCAGGAAAGCCACAaaccaataatattttttggaaaatggataGTTCTTGTCTATACCTTAATGCAGTTTGTCAGCACGGTTTCACAACAGCTTTAACCTGATCATTGTGTCTAAATCAGGACAGGGTACTAAGTTGTCTTTGACTCATAGGTTGAAATAAACAATGTCCACACAGTCTGTACCCTGACTctattaaataacacaaaaacacatacactaAAAACATGAGAAGCTATGGTAAAAACCGCCAGCCATACCTCTCTAATTCAGTTTCAATTTAAGGTAAATATAACTTGATGTTAACAGGTCACCTGCTAATGCACTGCAGTGCACATCCCCCTCTAGTGGtgaaataatcatattttgagTTCTACagtgtattttgattaaataaacggGTGCCTTGTATTCAA

Function

NR:

description
PREDICTED: toll-like receptor 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255225.1 True 801 mRNA 0.40 1 1276525 1277325

Neighbor

gene id symbol gene type direction distance location
si:ch211-198a12.6 si:ch211-198a12.6,LOC107747450,LOC107690167,LOC107589522,LOC107582518,LOC107678580,LOC108263519,LOC108444387,LOC103030417 coding upstream 1110 1269936 ~ 1275415 (+)
stox1 stox1,LOC107747447,LOC107690171,LOC107678608,LOC107708457,LOC107576485 coding upstream 8467 1253524 ~ 1268058 (+)
ccar1 ccar1,LOC107747452,LOC107690173,LOC107708455,LOC107582549 coding upstream 30554 1224840 ~ 1245971 (+)
zgc:110319 zgc:110319,LOC107690174,LOC107582515,LOC107747453,LOC107708456,LOC107678512,LOC107589524 coding upstream 52411 1221155 ~ 1224114 (+)
eif4e1c eif4e1c,LOC107582514,LOC107690176,LOC107708453,LOC107747456,LOC108444323 coding upstream 62481 1208243 ~ 1214044 (+)
tlr4al LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986 coding downstream 3581 1280906 ~ 1283687 (+)
LOC122356446 LOC107690199,LOC107678592,LOC107708458 coding downstream 11102 1288427 ~ 1291014 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding downstream 14720 1292045 ~ 1296933 (+)
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding downstream 21909 1299234 ~ 1327785 (+)
pdzd7a pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494 coding downstream 79943 1357268 ~ 1377953 (+)
G89754 NA non-coding upstream 112137 1080132 ~ 1164388 (+)
G89775 NA non-coding upstream 127422 1148271 ~ 1149103 (+)
G89764 NA non-coding upstream 129665 1129089 ~ 1146860 (+)
G89721 NA non-coding upstream 247230 1026973 ~ 1029295 (+)
G89719 LOC108444242,LOC103386924,LOC107747461,LOC107690181 non-coding upstream 249858 1024573 ~ 1026667 (+)
LOC122356494 NA non-coding downstream 21260 1298585 ~ 1299232 (+)
G89821 mat1a,LOC107582520,LOC107570529,LOC107733750,LOC107678534,LOC107708460 non-coding downstream 54513 1331838 ~ 1335134 (+)
G89842 NA non-coding downstream 168867 1446192 ~ 1447605 (+)
G89843 NA non-coding downstream 171721 1449046 ~ 1449943 (+)
G89844 sema4ga,LOC107733683,LOC107708465,LOC107678493,LOC107690158,LOC107582524 non-coding downstream 173040 1450365 ~ 1450830 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 136330 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 265278 1008268 ~ 1011247 (+)
G89631 LOC107698159,LOC107747466 other upstream 598924 380964 ~ 677601 (+)
dlg5a dlg5a,LOC107708441,LOC107698145,LOC107678499 other upstream 899954 323731 ~ 376571 (+)
fignl1 fignl1,LOC107721231,LOC107698153,LOC107678605 other upstream 1039632 190797 ~ 236893 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 64771 1342096 ~ 1345863 (+)
G89846 NA other downstream 192080 1469405 ~ 1470135 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other downstream 304033 1581358 ~ 1613330 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 563010 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 594859 1872184 ~ 1872591 (+)

Expression


Co-expression Network