pdzd7a (pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494)


Basic Information

Item Value
gene id pdzd7a
gene name pdzd7a,pdzd7,LOC107690160,LOC107570534,LOC107678494
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1357268 ~ 1377953 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255226.1
CACTGGGGCCTGGGAGGACCAGATGACTGACTTCTGCCAAGCAAAGCTCCACTGGCAGAGAGGAGGGACTCCTGCCTAATGCCCCGTCTAAGCCACAGACTTTCAACCCCGAGCCACTATTACACATCGTCTTTTCTGTGGGAGTCTTTCTCGAACAATGCGCATAAGGATACGCCACTTTTTGGATGATAGAATTTGTTTATCAGCTGTTCCGtgaaatgattataattatgtCAGAGTCCTTTGGATCAGTTCACTCTGTGAACACCAGTCACAACGTGGCTTGTAATATAGAGTAAACGATGCTGGATTCATAGCAGTGTCTTCCTGCACCGCTGCAGTGGAGTTTTCTTTTGTGGATCTAATCCCGTGGACTGTAATCCTTGTGGCTGGCATTGACCCACTGGACCTCTAGTTTTCCTCCTCCACCCTCTTTCCCTTTAGAAGCTCAGGCCCTGGATGAGGGTTAGAGGGGTGGTCGGCACTTTGCTATGGCTCATTCGTCTGACACGGCACGCAAAGACATGACGAATGGGGCTCATCCCAGTGCCCAGCCAGGGCCCTCGGGCACTTCTACTCTCCCACGCTATCTGCACAAGAAGCAGCAGCGCCAGAGAGGAGTGAGATCTTCCTCTCCTATGGGCAGGGTCATCCTCATCAATGCACCTGTTGATGGTGGGGATGACAGTGAAGACATCCACACAATTACTGTGGACAAAAGTGAGGATGGCAGGCTGGGCTTCAGCGTGCGGGGAGGCTCTGAACACGGCCTGGGAATCTTTGTCAGCAAAGTGGAGGATGAGAGCTCCGCAGAGTTGGCAGGCCTGTGTGTCGGGGATAAGCTAGTCGAGGTGAATGGCATAAGTCTGGAGAGCATCACCATGAGCAGCGCAGTAAAAGTCCTGACAGGAAATAATCGTCTGCGCATGGTGGTAAGACGTGTTGGGAAGGTGCCTGGTATCCGCTATTCGAAAGAAAAGACTACATGGGTTGACCTGATCCACCGAAGGATGGTAGTGGAAGAAAGTGGTCGCACCCCTTCAGAGGCCAGTTCAGATGGAGCCCTGCGCAGAATAGTTCACCTCTACACAACCTCAGATGACTACTGCCTGGGCTTCAACATCCGCGGTGGCAAAGAGTTTGGCCTGGGCATCTACGTCTCAAAGCTGGACCCCGGTGGCCTGGCAGAGCAAAATGGAATTAAAATGGGGGATCAGATTCTGGCAGCCAATGGAGTGAGTTTTGAGGACATCACACACAGCAATGCAGTAGAAGTGCTAAAGAGTCACACTCACGTGATGCTGACCATTAAGGAAGCTGGCCGATATCCTGCTTACAAGGAGATGGTGGCAGAGTACAGCTGgcttaataaatTGGCTAATGGAGGCCAGCCCTCCTCCTCCCAGGGTTCAGACTCCTACTCCTccacttcctctctctcctccgggACGCCGGTCAGCTCTCTCAGCGGCCTCTCGCAGGTCATGTTCCCCCCTGTATTCGGCTCAGAGATGGTGGATGTGTGCATCTCTACCGAGGACCGCTCACGTCGCCCCAGCTCTGAACGGATAGAGACCGCCATCCAAACGGACCCACCGGAGCCGGACGCCACATCAAGATCTAGTAGGGTCTTAACCACAGAAACCAGCCGAACGGTTGGTGAAACTGTCCTGTTAAAAGACACGGTGATCCGCAGCGGGACTGCCAAATCTCGGACAAGGACGTTCTCTGCTGGGGATAAAGAGACTTTGGACTCTGCTAAAACGGCGGTCCTGATGGCCCTGAGCAAGCCTCGCAAACCCATCCGCCGATCCCAGAGTCACATCACTGTGTCAGAGGACAAGCTGAAGAAAAGGAAGCATCAAAAGGACAAGGTAGAGACAGAAAGGAGCACCCTGCAGCGCTCCAAAACCTTTGTCAGCTTGCTCTTTAAAAGCGGACGCAGGAGGGAAAGGTCGTCCTCTAGAGACAGGAAGGACAAAGGGACAGGGGACGGACACAGAGGAAGATCCAAATCCCCGAAACATTTAGATAACGAACCTGGTAAAGAGCGGGGTCGACCCATAATTAACCTGTTGAGTTCTCCCAGAGAGACTCGTGCAGGCGTGAGGGAGCACAGCCCCATCCCCAGCCCCGAGACCATGGCCCTGTTGGAGGATATGGCCCGCAAACTGCTCAACGAGGATGAGGTAGCGGCTGTCATGAGACACTGTAAAAGGTTTCTAGTTGATCGTGTGGTTGAGGATCTGGTGCGCCCCCTGCTGGCCATCTTGGACAAGCCTGAGAAGCTCCTGCTGCTGAGGGAGGTTAGAATGATCATCCCTCCCACGGACCTGGGCCGGTTTGACAGCATGGTTTTGCCCTTTGAGCTTGAGGCCTATGACATACTAAAAAACCGCTCTGTAAGGTCTCCTGTCCTACGTTCTCCACGTCATGGTGGAACACCTCGTCGTCATCTAATAACTCCAATCCCAGATTACCGTGGCGGATTCCACCTTCAGCCGGTGCAGGATCTGGAGAGAGAACGGCAGCTCATTGAAGATCTGGAACGGCTGCGTTTGGCAGGTTTACCGACCGGACGACTTCCTCCTCCTCGAGCTTTCACTCCTCTCCTGGATGTACCAGTGGACACTTACATCACAGACTCGCTCCGTAATCGCTCACTGAGCCCCGCTCGGCCCAGCTGGACTCACTCGGAGTCTCCTCACGGCACGGGACGCGTCGGACGCTCACCCCAGAGAAGAGACAGCGTTTTCCCCAGGACATCACACCATGACTCTTTATCCAGCAGGGGTGATTCTGCCCCTGAGCGAGGGAGATCTCCTTATAGGAATGGACATCGAATGAAAACAGACAAATCCCAGAATGGTAAAGAGGTAAAGCATACTGTAATGAGTGCACAACGCCGGAGCAGGACACCACTGACACAGGTGTTTGCGCCCAGCTCGGATCAGGACTGGAAAGAACCAGTGAATGGACATTCAGACAGCCAAGAAACCCCACCAGAGCAGGAGTATGAACTAACCACAGTTACTATTTCTAAGACCAAACAGTCCCTTGGAATAAGCATCTCAGGTGGGATTGAGTCAAAGGTGCAGCCAATGGTGAAAATAGAGAAGATCTTTCCAGGAGGAGCAGCATCTACTAGTAACGTTCTAAAGgCTGGATTCGAGCTGATGTCGGTTGACGGAGAGTCCCTCCAAGGTGTTACACATCAGCATGCGGTGGATGCCATTCGAAGGGCTTTCAGCAACAAGGCCAAAGACCCCATGGAGTTTATCGTCAAAGTTCCCAAGAACCCGAGGGACTGACTGAAAACAGCCTAAAACTCAATGAGTTTGCAGTAAAGGCCTCAGTATACTTACGGCAAAGTTCTCTTTCATTCTTCAGgaagtaaaagtaaaaggaAGTTTGAAATACGCAATGCCTGAAAATCATGAGAGCAGCGATTAGATGAATATGTAATCATGAGCAACACACTCTTTTctcaataacaaaataaatacaaaaagacagAATTAAGCAGTTAAAAACAGCAGTTAAAGGGACGGTGCACCCTACTGTATTATATAATTGCCACGGACCAATGAGAGTTTGAAGATGCTTACAGCCGAAGAAAACTTTTCTGTCAAGTTGCTTTGAATTCCAGAAACAAACTCTAACTTTTGGCCTGATTTTGTTTAGAAAGATATTACACCAGTTCTTGAATTTTGCTTGAAGTATATCAGGGTCTTAGTTCTGCAGTGTATAAATGAAGGACACATGCTTGGTTTGAAGGAGAAATCAAGGCATCATGTCCGGTAGAGCAAGAATCCAAAAATGGGCTTCCAGAGAGTGCTATTGGCCATTTACAGATGCTGACCTTATCCCTTCCTGTTGAAAGTTATTTGCTTTTGAAtctgttctttttctattttcaattCATTCCATAAAGTCTAATTAAACAGTCATAACTCATCATTTCCACCATTAAACGATCTGAAACCCTGTATAAACATGAGATATTAAGGGTTTCTATTTTTGGTTGCAGTTTAAGCCTGGAGCTAGATAAGAGTGGACTGACATGACATGCTTATAATCATAAGTCATAACACTATACCCATCCATCTGGGTTACAGTCATGCCTGAGAGAGATTACACACAGCCACAGTATGGATTGAGATTGAGATTaggtctttttttctttcttttaaattgcTGGTTTGGTTTAGTGAATGTCTGGGGGATTATTACAAATGAGTATCTCTGTCTCAGTTCACATGCTATGCTCTAAGAGAATTTCTATTTTTGGCAACTTATGCTTATActtagcatttcttttttatatttgtgccTTAAAGCTGCACATATGGACTGTGCAATTGAGATCTAAACGTTGTGATGATTGTAAGATCAGTGTTATATACTGAACGTTTTTCTCTGTACGCATCTGAAAAGCATCTGGtctgcatttttgcaatttgttttattacaagtCATTGtgtgattataaataaaaaggttaaatat

Function

symbol description
pdzd7a Acts upstream of or within eye photoreceptor cell development and inner ear receptor cell development. Predicted to be part of stereocilia ankle link complex. Predicted to be active in plasma membrane and stereocilium tip. Predicted to colocalize with photoreceptor connecting cilium and photoreceptor inner segment. Is expressed in hair cell and retina. Human ortholog(s) of this gene implicated in Usher syndrome type 2A; Usher syndrome type 2C; and autosomal recessive nonsyndromic deafness 57. Orthologous to human PDZD7 (PDZ domain containing 7).
pdzd7 Predicted to enable identical protein binding activity. Predicted to be involved in auditory receptor cell stereocilium organization and sensory perception of sound. Predicted to act upstream of or within auditory receptor cell development; detection of mechanical stimulus involved in sensory perception of sound; and establishment of protein localization. Located in cilium and nucleoplasm. Implicated in Usher syndrome type 2A; Usher syndrome type 2C; and autosomal recessive nonsyndromic deafness 57.

NR:

description
PREDICTED: uncharacterized protein LOC103360635

GO:

id name namespace
GO:0060119 inner ear receptor cell development biological_process
GO:0042462 eye photoreceptor cell development biological_process

KEGG:

id description
K21882 PDZD7; PDZ domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255226.1 True 4509 mRNA 0.48 15 1357268 1377953

Neighbor

gene id symbol gene type direction distance location
zgc:154058 zgc:154058,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC103041715,LOC108441772,LOC108263524 coding upstream 29483 1299234 ~ 1327785 (+)
LOC122356485 LOC107690198,LOC107582551,LOC107733679 coding upstream 60335 1292045 ~ 1296933 (+)
LOC122356446 LOC107690199,LOC107678592,LOC107708458 coding upstream 66254 1288427 ~ 1291014 (+)
tlr4al LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986 coding upstream 73581 1280906 ~ 1283687 (+)
LOC122356482 LOC107690165,LOC107678593,LOC107747448,LOC107678592,LOC107708458,LOC107708381 coding upstream 79943 1276525 ~ 1277325 (+)
prorsd1 LOC107701441,LOC107571560 coding downstream 305297 1683250 ~ 1685179 (+)
LOC122356760 pim3,LOC107732271 coding downstream 390780 1768733 ~ 1770226 (+)
foxg1d foxg1,LOC107709474,LOC107680282,LOC107565904,LOC108443822 coding downstream 437865 1815818 ~ 1818092 (+)
irf1a LOC107571076,LOC107725011,LOC107680285,LOC107565919 coding downstream 482978 1860931 ~ 1864358 (+)
fbxo28 fbxo28,LOC107753723,LOC107742812,LOC107701582,LOC107558225 coding downstream 661529 2039482 ~ 2046270 (+)
G89821 mat1a,LOC107582520,LOC107570529,LOC107733750,LOC107678534,LOC107708460 non-coding upstream 22134 1331838 ~ 1335134 (+)
LOC122356494 NA non-coding upstream 58036 1298585 ~ 1299232 (+)
G89754 NA non-coding upstream 192880 1080132 ~ 1164388 (+)
G89775 NA non-coding upstream 208165 1148271 ~ 1149103 (+)
G89764 NA non-coding upstream 210408 1129089 ~ 1146860 (+)
G89842 NA non-coding downstream 68239 1446192 ~ 1447605 (+)
G89843 NA non-coding downstream 71093 1449046 ~ 1449943 (+)
G89844 sema4ga,LOC107733683,LOC107708465,LOC107678493,LOC107690158,LOC107582524 non-coding downstream 72412 1450365 ~ 1450830 (+)
G89855 NA non-coding downstream 160349 1538302 ~ 1539354 (+)
G89817 LOC107678592,LOC107708458,LOC107690199,LOC107690165,LOC107747448,LOC107678593 non-coding downstream 168974 1546927 ~ 1561464 (+)
selenou1a fam213aa,fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 11405 1342096 ~ 1345863 (+)
G89770 LOC107582509,LOC107690188,LOC107747458 other upstream 217073 1139159 ~ 1140195 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other upstream 346021 1008268 ~ 1011247 (+)
G89631 LOC107698159,LOC107747466 other upstream 679667 380964 ~ 677601 (+)
dlg5a dlg5a,LOC107708441,LOC107698145,LOC107678499 other upstream 980697 323731 ~ 376571 (+)
G89846 NA other downstream 91452 1469405 ~ 1470135 (+)
LOC122356486 march8,LOC107690179,LOC107582508,LOC107708446 other downstream 203405 1581358 ~ 1613330 (+)
mpc1 mpc1,LOC107693783,LOC107725004,LOC107565920,LOC107709408,LOC107571070 other downstream 462382 1840335 ~ 1842108 (+)
G90010 LOC107676803 other downstream 494231 1872184 ~ 1872591 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other downstream 611919 1989872 ~ 1997310 (+)

Expression


Co-expression Network