LOC122356507 (LOC107708201,LOC107658777,LOC107554523)


Basic Information

Item Value
gene id LOC122356507
gene name LOC107708201,LOC107658777,LOC107554523
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 21027765 ~ 21042154 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255251.1
ACATCGTCTCTCGTTcgattcatattaaaatgttaagatgCTGTAAGGTTTTGGAGACGTTTGTTTGCGGCGCTGTTAtcgttaaaatatattaaacaatattttcgATCATCGGCTATATATTTTCGAACAATTTCTGTTCAATCTGTGAACAAGGGCTTTTGGAATTCGATTCCAGTAACCACAAACGGCTGTGATTGGTCCGTCTTTACCAGCGCATAGAAAAGTACCAAATACCACGTGACTACGCCGCGTTCTTTCGTAGCGATCAGaacttttcacttttatttttttttatagctgctttatttaaaaacagcaaatgaagagctcaaacaaaataataactatGCATTTCGGTATTATCAATTTCGGTCCACTTTTTTCAAGAAACCTGCCGCTCTATTTACGTATTTTTGTGATGCACACGTGATCCCTCATTCTGGTGGAAGTGCAGAAATAGAAAGCACAGAGTCATATATTATGTACTCTGTAGTGATACATTAGGCGATGAAGGTTATACGATGTCAACGTTTGCTCTAGACTATGATCCCGTTAAAACGCAGGAAAGTTTCTCTACCTGTAAACCAACAGAATGACACCTGTAAATTTCCCCACGTTTCCATATTCATCTTGGAGAGGAAGATGGGAGCATCTAGAAGGGCATTTCTTACACGACTTGGCCGGAGTAAAGGGTTTCTTATTGAAGAAATCTACAGTTCCTCCATCACACATGTTGTGTCGGAAAACAACAGTGGAGATGAAGTCCAAGCCTGGCTGGGCAACCAAACAGGACAAGACACCTCCAGTTCTGTCCATTTGCTGGACATCAGGTGGTTTACGGAGAGCATGGATGCAGGACAGCCCGTTATAATTCAGGACAGACACATATTAAAGGTTAAACCCAAACCTGACGGAGACCACACAGCAATGCTGCTGAAAAGTTATGCCTGTCAAAGACGAACACCTTTAAAACACCACAATTCGTTTCTAACGGAGGCTCTTGAAATCTTGGCTCAGAACGCCGAATATAATGACAACGAAGGACGGAGCGTGGCGTTCAGACGGGCAGCTTCGGTCCTAAAGGCGCTTCCCCGGCGCGTGAGGAGCATGGAGGATCTGAGGTGTTTGCCCTGCCTGGGTGACCATTCACAGAGAGTTATAAAGGAGATTTTAGAAGATGGATCTTCAAGAGAAGTAGAGTCGACAAGACAATCGGAGCAATATCAGGCCATGAAGGCCCTAACTGGTATTTTTGGGGTGGGTGTGCGGACGGCAGATCGCTGGTTTAGAGAGGGTTTGCGATCTCCAGACGATTTAATTCGCACAGGACAACAGTTGAACCGTGCACAGCAAGCAGGAGTCCAGTATTACGATGACCTCCAGAAACCCGTCACTATGGCGGAGGCTGATGTCATCagtgatatcgttgagaaagcTGTGCACTCTGTGCTGCCCGGAGCAGAGATCCAGCTCATGGGAGGCTTCAGGAGGGGGAAGGAAGTCGGTCATGATGTGGACTTTCTCATAACGCATCCAGAGGAAGGAAAAGAGGAAGGACTGATGCCTAAAATCACAAAGTGGCTGGAGGAGCAGGGTTTGCTGCTGTATCAGAAAACGACCAGAAACTCCTATCTGGAAAAAACGGACGGTCCAGCTCGGGCGTCTAGTAACATGGATCGCTTCGAGAGATGCTTTTCTATATTTAAGCTTCAGAAACCTGCTGTGAGCCGCGAATCGAATTGCACAGTTTCCGCCGAGGATGCCGGTTCAGAAGCGTCAGGCTGGAGAGCTGTACGAGTCGATCTGGTGGTCAGTCCCTGCAGTCAGTTTGCCTTCGCCACCCTCGGATGGACCGGATCAAAGCTGTTTGAGAGGGAGTTGAGACGGTGGGCGGGGCAAGAGAAGCACATGTCCTTGAGCAGCCACGCCCTCTACGACAGCACACAGAATCTGTATCTCAGAGCAAAGACAGAAGAGGAGATTTTTTCCTACCTGGGTCTAGAGTTTATTCCTCCATCTGAGCGAAATGCCTGAatttatctgtttttaattttcactaCAAATGTTCCAGCATTTCCATACATCGTGAAACATGTTTTGATCTAGATGTTCATAAGATATTGTTTGTCTCCTTGAAACTTGAAcatgaaattacttttttatttaaagctgaatttaataaaaacccaAAGTATGCATCTTTA
>XM_043255253.1
GGTCTTCCGAGAGGTGGCGCCTGGCCCAAAAACATCGTCTCTCGTTcgattcatattaaaatgttaagatgCTGTAAGGTTTTGGAGACGTTTGTTTGCGGCGCTGTTAtcgttaaaatatattaaacaatattttcgATCATCGGCTATATATTTTCGAACAATTTCTGTTCAATCTGTGAACAAGGGCTTTTGGAATTCGATTCCAGTAACCACAAACGGCTGTGATTGGTCCGTCTTTACCAGCGCATAGAAAAGTACCAAATACCACGTGACTACGCCGCGTTCTTTCGTAGCGATCAGaacttttcacttttatttttttttatagctgctttatttaaaaacagcaaatgaagagctcaaacaaaataataactatGCATTTCGGTATTATCAATTTCGGTCCACTTTTTTCAAGAAACCTGCCGCTCTATTTACGTATTTTTGTGATGCACACGTGATCCCTCATTCTGGTGGAAGTGCAGAAATAGAAAGCACAGAGTCATATATTATGTACTCTGTAGTGATACATTAGGCGATGAAGGTTATACGATGTCAACGTTTGCTCTAGACTATGATCCCGTTAAAACGCAGGAAAGTTTCTCTACCTGTAAACCAACAGAATGACACCTGTAAATTTCCCCACGTTTCCATATTCATCTTGGAGAGGAAGATGGGAGCATCTAGAAGGGCATTTCTTACACGACTTGGCCGGAGTAAAGGGTTTCTTATTGAAGAAATCTACAGTTCCTCCATCACACATGTTGTGTCGGAAAACAACAGTGGAGATGAAGTCCAAGCCTGGCTGGGCAACCAAACAGGACAAGACACCTCCAGTTCTGTCCATTTGCTGGACATCAGGTGGTTTACGGAGAGCATGGATGCAGGACAGCCCGTTATAATTCAGGACAGACACATATTAAAGGTTAAACCCAAACCTGACGGAGACCACACAGCAATGCTGCTGAAAAGTTATGCCTGTCAAAGACGAACACCTTTAAAACACCACAATTCGTTTCTAACGGAGGCTCTTGAAATCTTGGCTCAGAACGCCGAATATAATGACAACGAAGGACGGAGCGTGGCGTTCAGACGGGCAGCTTCGGTCCTAAAGGCGCTTCCCCGGCGCGTGAGGAGCATGGAGGATCTGAGGTGTTTGCCCTGCCTGGGTGACCATTCACAGAGAGTTATAAAGGAGATTTTAGAAGATGGATCTTCAAGAGAAGTAGAGTCGACAAGACAATCGGAGCAATATCAGGCCATGAAGGCCCTAACTGGTATTTTTGGGGTGGGTGTGCGGACGGCAGATCGCTGGTTTAGAGAGGGTTTGCGATCTCCAGACGATTTAATTCGCACAGGACAACAGTTGAACCGTGCACAGCAAGCAGGAGTCCAGTATTACGATGACCTCCAGAAACCCGTCACTATGGCGGAGGCTGATGTCATCagtgatatcgttgagaaagcTGTGCACTCTGTGCTGCCCGGAGCAGAGATCCAGCTCATGGGAGGCTTCAGGAGggGCAAGGAGTTCGGTCACGATGTGGACTTCATCATTAAAACGTTCGAGTCCGGGCAGGAGGACGTGATTCTGGCCGCCGTCATCCAGAGATTCAAAAGCCAGAACATCCTGCTGTACTCGGACCTCCAGGAGTCGACCTTTGACCTGCGGCAGCTGCCGACTCACCGCTTCGAGGCCATGGATCATTTCAGCAAGTGTTTTCTGATCGTGAAGCTGAAGCGCGAGCCGGAGCCGGACTCTGGAGCCGGACGGGACTGGAGAGCGGTGCGTGTGGATCTGCTGGCTCCGCCGCTGGAGCGCTTCGCTTACGCCCTGCTGGGCTGGACCGGCTCCACGctgtTTGAAAGAGACCTGAGACGATTCGCCAGACTGGAGCGAGGAAAACTGCTGGACAATCACGCACTGTACGACAAAGCAACGAACTCCTTCCTGTCTGCTGACACCGAGGAGGACATCTTCGCTCACTTGGGTTTAGAGTATATCGAACCTCGGCAACGAAACGCCTAGATGCTGTTCTGGAGA

Function

NR:

description
PREDICTED: DNA-directed DNA/RNA polymerase mu-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K03513 POLM; DNA polymerase mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255251.1 True 2207 mRNA 0.45 11 21036985 21042123
XM_043255253.1 False 2047 mRNA 0.48 11 21027765 21042154

Neighbor

gene id symbol gene type direction distance location
LOC122356249 LOC107686530 coding downstream 30052 20955467 ~ 20997713 (-)
vox vox,LOC107750144,LOC107689360,LOC107580632 coding downstream 78067 20947987 ~ 20949698 (-)
vent NA coding downstream 81240 20944584 ~ 20946525 (-)
blnk LOC107750133,LOC107728331,LOC107689749,LOC107689365 coding downstream 340845 20662202 ~ 20686920 (-)
ccnj ccnj,LOC107689370,LOC107565073,LOC107728310,LOC107750147,LOC107689765,LOC107750154 coding downstream 376210 20645694 ~ 20651555 (-)
LOC122356506 LOC107689349,LOC107663567,LOC107750141,LOC107720869,LOC107570923 coding upstream 167664 21209818 ~ 21254638 (-)
LOC122356942 LOC107689348,LOC107663569,LOC107750139,LOC108426858,LOC562831,LOC108262825,LOC107567011,LOC105926138 coding upstream 227196 21269350 ~ 21323003 (-)
trnag-gcc_70 NA coding upstream 371646 21413800 ~ 21413871 (-)
trnag-gcc_71 NA coding upstream 532097 21574251 ~ 21574321 (-)
valopa valopa,LOC107689369,LOC107688178,LOC107754013,LOC107745034 coding upstream 805276 21847430 ~ 21866898 (-)
G95643 NA non-coding downstream 24114 21002627 ~ 21003651 (-)
G95642 NA non-coding downstream 25921 21001337 ~ 21001844 (-)
G95641 NA non-coding downstream 28500 20999040 ~ 20999265 (-)
G95640 NA non-coding downstream 31254 20996083 ~ 20996511 (-)
G95635 NA non-coding downstream 51268 20976279 ~ 20976497 (-)
G95715 NA non-coding upstream 445360 21487514 ~ 21495153 (-)
trnag-gcc_72 NA non-coding upstream 611458 21653612 ~ 21653681 (-)
G95899 NA non-coding upstream 832359 21874513 ~ 21874929 (-)
G95903 NA non-coding upstream 997628 22039782 ~ 22040106 (-)
G95902 NA non-coding upstream 1072542 22114696 ~ 22120442 (-)
G95526 NA other downstream 456203 20570038 ~ 20571562 (-)
G95511 NA other downstream 530901 20493642 ~ 20496864 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other downstream 535689 20488785 ~ 20492076 (-)
G95520 NA other downstream 541061 20479925 ~ 20486704 (-)
LOC122356211 gng4 other downstream 752379 20264726 ~ 20275386 (-)
LOC122357128 NA other upstream 1095234 22137388 ~ 22143970 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other upstream 1109588 22151742 ~ 22156859 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other upstream 1189295 22231449 ~ 22250313 (-)
G95932 NA other upstream 1193950 22236104 ~ 22238570 (-)
G95936 lbh other upstream 1254187 22296341 ~ 22297227 (-)

Expression


Co-expression Network