ttc7a (ttc7a,LOC107586483,LOC107678602)


Basic Information

Item Value
gene id ttc7a
gene name ttc7a,LOC107586483,LOC107678602
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4404523 ~ 4437492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255258.1
tatatatatatatatagcaggtGTGAgcttaaaacaataaatctttAAGGTAGTAAGAACATTAAAAGGGTGCACGTTACAGGAGTCGTTCAGTTTGTCGTCCACTAGATGGCGCCGCTGTTTCGGCAGGTTGAAAGGACGGGcgtctcatttttattttattttttttgggtCATTTGCATTCTGCGGCAGATGTTTGCATCACAATGGTCACTATTTTCATCTAAACGGACCCACGAGTCGGCCTCACTCCGGACTCTGATGGGAGCAGCTCCCTCTGTTGATCCGATGAGTCGATTAGAACAAGCCCCGCAAATAGTTTACACAAAATAATTGGTTAAATAGATTTAGTCATCCAGCAGTGGAGGGATTTCAGGGAAATAGGGCATAGGCTAGTCGTCAAGACCTGCTAAACTACATTTGTGGTTTAATCAGGCACTTAACTCAAGACTGAGACCTAGTTTTGCGAGACTTTTTCGGAGCTTCTTAGATGCAGGCGAGTTTGTTTCTCGGACTAAATGCATTTGGAGAAACGTACGGCTCctcttgcagtgaatgggtgccatcgaAATGTTAACGTCTCGTGAAcggaaaagctgtgtgtttgtaagaaacaaatccaacatttttttttattttagtgcattgcCGTAACTGTTTTGCACTATTGATCTGTGCACATTTCTCCCCTGATTCTTTTCACACGAGAAAGCAAAATTATCGATAGACGACCTGCATAAGCAAcagtttaatgttaaaacatatatatttcttttttaaatgaacgtgCCTCTTTTTCGCTTCACAAGGTGATTCGTGTTTTTATCTCTtgttctggcggcacccattcgctgcagaggatccattcaCGAGgaaacatttttccaaatctgttctgatgagaGAAAACAAACGCGGCTGGGTTTCGGAGCACATTACTACGACCAGCCTCGCACCAAATAATGACCGATTTAAGCAGCGAGGGAATATCTGAAGTGGagtttccagggttaaaaaaaaccaagaaGTCATGGGATTTTTCCTAGAATGGCTAGCTCTAGTTTGAAGACGTAGCAGCCACATGCAAAAACCTTCTTTTTGCATATCAGTAgtgaaaatgggaaaaaaaaagctgtttgcaTAAGACAAGCCCGATTCCATTAACTAGACCACACCCCCAGACTacttgattaatattcatgagtccTACAGGCGCAACTTAGAAAACAAGAAATTGCTCCACAAAAAAagtctatattattatatttagctaTAATAACACATTTGTGTTTGACGGGCTAATATAAATTAGGCGGAGGCTATTTGCGTGAAGTGCAAATAACGATAGAGGCTATTTACACCGCGTGCAAATAACATCTTCTGCTGTTTATACTACTTACTGCAAGCGGCAATCTGCaccattataaaacagaatgcagcTTATTAAGtgtaaatgttacttttgattcaaatgataaaatagACGACGCCCTCATTGGGAAGATAAAGCCCTCCCTAAACATTAATCTACCCGATGCATTATTCTCAACtttttattgtctttgaaaatgaatgcttttctgGTGCGATCCGATCAAAACAAGACCGCCACGCGTTTTACAATAACGCGGGCTGTCTGCGCTTGGCGTAAAGAGGCGCTGCCTGTAAAGCGTGCCCTTTTTTCGTTAAACGTTTCAGTTCTGACTCTTGCGTCTGTTCATATAACGTTCAGCTGTAATGTCGCGATTCGCCAAACGCGCCAAACAGACGCTGCTGATATTagaatgaaatcaaaataaataaacgccaCGGGGGCAACGCTGAGTGAAAACCCGACCCAAATAATATTCCGAGTTGTTAGCGGGAAGGATCGATGCTGTTCAGTCGCTGAATGGGCAAAGTCTTGCGGTGTTCGCACATGCTCAGTGAGTCTCCCGTTGTCAGTCGGCAGTCACTCCTCTGGTGTCGGCGGAGCGCGGACACAGGGACGCGGGAGGGATGTCGTCGCGGCTGTCCTTCTCTCAGTACCGCTTAGAGGCGGAGGTGGAGCGCTGCCGCGCGGACTGTCAGTGGGACAGGATACCGGTCCTGCTCGAGCAGCTCGCTGCCGCGCGCCTGCATGACGACGATGATTACAGGACGCTGCTGCTGGCAGAAGCTCTGCTGGAGGAATGTCTGCTGGAGAACACGACCTCGCTGAAGAACTCGACGTTTCTGACCGAACACTCACAGCCCAAACTAGCCCGAGCAAAAGCTCACCTCGACAGCATCTTGAGCAGAGGACGCCTGGAGCCTCACTACCTGAATGAagctctgctgctgctggctAAAGTGCACTACGTCCAGGGCCGCTACAGGGACGCCCAGGGCATGTGTGCCAGAGCAGGTGTGGATGATTTCTCCCGCCACGAGAAGCCCGTCTACCAACTGCGCATGCTGGCAGAGGCCTTCGTCATCAAAGGTTTGTCTCTGGACCACCAGTCTATGTCAGGTGCTTCCCGTGTTAGACTGTGCGAGCGAGAGGAAGAGTGCCTGTCCTGTTACCTCATGGCTTGTGACGCTGGCCTGCTGTACCTGCAAGAGCTCGAcaagATTGTTTGCACGCCAAGCTCCAAAACCGCTAAAAGCGGTTCATCGGTCCCAAATTTTGACTTGGACCCAGGCTTCTTCCTGCAGGCAGCTCTTCAGAGTGCATACCTGTCGCTGCTGAGAAAAGGtCACTTGGCTCAGGGAACTCAGCAGCTGCGGCGGGTCATGAGGGCTGTGGAGAGTCGGGGCTCTCAGAGTTTTCGTAAGACAGTGGCGCGCAGACTTGCCGAAGTGCTGCTGGGCTCAGTGTGTGAAGAAGCATACTGGGGTCCGCTGTCTCCTCCACCACCCGGCTGGCTGAAGAGGGAAGGAGCCACACACCCCAAAAACGCCATCTACCCCTCGTCGGGACCGCCACAGCGCTACAACACCGAAGGAGCTTTCTGTCCACAGGACGTGGTTGAAGAGGCGGTGCTGGTGCTCCTCATCACAGAATCAATGGCCAGTGGCGAGGTGGTGATCAGCCGAACACCCGAGCATCAGGAGGCGAGGGAGAGCAGCATGCAGGACGCCTCCTCCGTCTACGACCTGCTGAGCATCGCCATGGCCAGGAGGGGGCAGTACTCCATGCTGTCTGAGTGTTTGGAGCGGGCCATGAAGTTATCCTATAATGAGTTTCATCTTTGGTACCAGCTCGGCTTGTCTTTGATGGCAAGTGGGAAGAACGAGGGTGCAGTGTCAGTGCTTAAAGAGTGTGTGGCAATGAAACCCCAGGACCCCATCCCACCTCTGCTTGCAGCTAAAGTGTGTATCAACCAGCTGCACTGGctggAGGATGCAGTGTCCCTCTCAGCGGGGGTGGTTGCTTTAGGAGAGGGTGCTGGAGAGTCCCTTCCTCGAGCTCATCTGGCCATCGGACTGTGCCGTAGCCTGCAGGCCTCTGACGCTACGCTGAAAGCCGATCGCGATGAGTTCAACAGAAGAGCGCTGCAGTCACTACGGAAAGCGCATGCACTGGACCCCGGGGACCCTCGGATCTCCTTCTACCTCTCTCTGCAGCTCGCTCTGGTTCGACAGGTGTCGGAGGCGATGGAGCCGCTGCAGTCGGCTCTGAATATCTGTGGGGATGATCTGCACTCTCTGCATCTGCTGACTCTACTGCTCAGCGCCCAGAAACACTACCAACATGCCCTCGATACGCTTAAACTTGCCATTAACCAGCACCCGGACAACTTCAATCTTCTCTTTACCAAAGTGAAGCTGGAGGAGGCTTTGTTCGGATCCGCTGCAGCGTTACAGACCTGTGCAGAAATGCTGCAGCTGTGGCAGAGTCGCTATGATTTGACCCGTCTCAGCGAGGAGGACGACGCTAGCAGCGTGCCTCCTGATCCCGGACCGCTCAGCAAGAAACCCAGCGGCCTCCATCTCACGCTCCCAGACTTCCAGGAGACGGAGACAGGGTCCCAGAGCGCCCCGTCTCTAGCGGTGTCCCGTCTGGAGCAGGCCATGTCGGAGGTGTCAGCCATTAGCTCCGCCCACAGGCACGGCCCCGCCTACATTTGGACCACACTGGAACGCATCTGGCTGCAAGCAGGAGAGTTGTTCATGGCTGACGGGAGGATGAAGGAAGCTCAGTTCTGCGTGCAGGAGGCAGGGTCTCTCTTCCCCGCCTCACACTCGGTGCTGCTGCTCAAGGGCCGCGTGGCTGAGCTCAGGGCCAACGACGCGGAGGCCAAGGGCCTGTACGACGAAGCTCTCGCCATCAACCCCAGAGGACACCACATACTGCTGCACCTGGGGAAGTTGTTGGTGCGCACCGGCCGCGTGGGTCTCGGGGAGAAGATGCTGAGAGATGCGATACAGGTGGAGAACACGGCGCACGAGGCCTGGAGCGGTCTAGGGGAGGCGCTGCAGAGCAGAGGCAGCTCACAGGCTCCAGACTGCTTCCTCACTGCGCTGGAGCTGGAGTCCAGCTGCCCTATACGACCCTTCACCATCATCCCGCGAGAGCTCTGACACGTCTCTGAACGAATGGAGCGGTACACCCCAATGTAAGGGAACTGTGTAGTCAAATATCGGAAAAACATGGGGGGCGCTGTCAATAGATTTGATCAACCGGTTATCTCGTTCAAATCAAGCAGCTCTGGGAATTCGCACGACCGACTGGAATTTGAGCTGAAACTGGGTAGGGAACTTAGAGTATTTAAATCAATCgtcatttaaatcaaacatgattTACTAAGGTTTGCGGTAGTGAATTCGCGCAATAATTTTCTGCCCCCAAAAAGCATGGATGCActgcagagtttttttttttttgcaatggcAGAGGATTAGCATCAGCTCCACTTGTCCTCTACTTGATCTCTTCCTGCTCTTGGTAGATTGCGTTAGTCATTATGGAAATAAGATGTTGTGTCCGTGCTATTTATTTAGAAAGCCGTCCGTAAATCGCTTGCAGAAATTTTGTTAACCAAATAGCTCAaatcttttacatttacttcaACCTGATGAAGAACACTTTAGCCCAGGGTTATGTGTAGTGtgaaaagtcattattattattatataatacactGTCGCaccaaaaacataaatgcaacGCGGAATGATTGAACAcaacacattttctttaaactgCAATAGTTTCAGCAAATATGCTGCAACGTGTTCAGAGTCTTGTTTCTCAGGGACAAAACGGTTgactttttaaattctttagtatttataaatgtaacgATATTCTGTACTGTATGTTCTTCTCATAAAAGAGCTATTTTGCAATCCCA

Function

symbol description
ttc7a Predicted to be involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Predicted to be active in plasma membrane. Is expressed in brain; ectoderm; intestine; and notochord. Human ortholog(s) of this gene implicated in multiple intestinal atresia. Orthologous to human TTC7A (tetratricopeptide repeat domain 7A).

NR:

description
PREDICTED: tetratricopeptide repeat protein 7A-like

GO: NA

KEGG:

id description
K21843 TTC7; tetratricopeptide repeat protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255258.1 True 5318 mRNA 0.50 20 4404523 4437492

Neighbor

gene id symbol gene type direction distance location
epcam epcam,LOC107707150,LOC107727388,LOC107699297 coding downstream 50772 4351284 ~ 4353751 (-)
thada thada,LOC107586496,LOC107590015,LOC107707143,LOC107727367,LOC107590014 coding downstream 79048 4245731 ~ 4325475 (-)
LOC122357001 LOC107699293,LOC107586477,LOC107727368,LOC107678540,LOC107707148 coding downstream 160090 4241527 ~ 4244433 (-)
haao haao,LOC107586504,LOC107699283,LOC107727361,LOC107590002,LOC107678607,LOC107707146 coding downstream 336917 4062472 ~ 4067606 (-)
LOC122356122 kcng3,LOC107758134,LOC107590001,LOC107756869,LOC107586474,LOC108273984 coding downstream 382123 4016033 ~ 4022400 (-)
prop1 LOC107727379,LOC107699286,LOC107586498 coding upstream 4400 4441892 ~ 4446288 (-)
socs5b socs5b,socs5,LOC107727375,LOC107586485,LOC107708402,LOC107699300 coding upstream 24530 4462022 ~ 4471950 (-)
galm galm,LOC107586487,LOC107699302 coding upstream 169732 4607224 ~ 4611108 (-)
hells hells,LOC107727385,LOC107586490,LOC107699304,LOC107708407,LOC107678596,LOC107589556 coding upstream 188896 4626388 ~ 4672250 (-)
gbf1 gbf1,LOC107708418 coding upstream 400286 4837778 ~ 4904092 (-)
LOC122356721 NA non-coding downstream 56999 4338842 ~ 4347524 (-)
G90633 LOC107590022,LOC107586473,LOC107758132,LOC107666233 non-coding downstream 390522 4010173 ~ 4014001 (-)
G90629 LOC107586470,LOC107698167 non-coding downstream 452926 3945108 ~ 3951597 (-)
G90632 NA non-coding downstream 460259 3943873 ~ 3944264 (-)
G90631 NA non-coding downstream 460818 3943460 ~ 3943705 (-)
G90802 epas1,LOC107586486,LOC107727363,LOC107699276,LOC107589559,LOC107708405 non-coding upstream 107529 4545021 ~ 4570758 (-)
G90786 NA non-coding upstream 111619 4549111 ~ 4622804 (-)
G90785 NA non-coding upstream 123284 4560776 ~ 4584961 (-)
G90842 NA non-coding upstream 312940 4750432 ~ 4750968 (-)
G90846 NA non-coding upstream 392259 4829751 ~ 4833144 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 349110 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 448568 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 968943 3422753 ~ 3435580 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other downstream 1105974 3281337 ~ 3298549 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other downstream 1159627 2990418 ~ 3244896 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 235474 4672966 ~ 4689168 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other upstream 253390 4690882 ~ 4779732 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 1483010 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 1624193 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1782683 6220175 ~ 6227272 (-)

Expression


Co-expression Network