prop1 (LOC107727379,LOC107699286,LOC107586498)


Basic Information

Item Value
gene id prop1
gene name LOC107727379,LOC107699286,LOC107586498
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4441892 ~ 4446288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255262.1
GTCATCATCAGCTCAGTGAACAGCATATGAACACAACTCACTTTCTATTCTTGAATAAATCACGTTTTATCTGTGGAAAAGAACAGGCAGATCCTGGCAGTCTGGGTCTGGTTGACTGTAGACTCCCTCAGGAACACTAAGTCACCCACCTTGGCAAAAACGATGCTCATACTCGCCATGTCTCTGACTTTTATCTCGTCTGTCAGAGCTCTTCAGTCCAGTCCAGCAGAACCAATCTGATTCTTCATGCTTgacaaacaaataatgtttaattaaaaagaaactctCATTGCAATTCATTACTGTTTCACATTGCAGCCGACTGGTGGTGAATGTGTGCATCACTTAACACCTTttgtgaaaaagtgaaaagctgtgtgtttgcaaaaaaattctgacggcacccattcagtgcAGAGGATCCATTTATGAACAAGAGATGTAATACAATTCTAATCTTTATAATCTATCTATATACTGTTTTAACCACCTTTGATCTGTCCTAAAAATATGAGGTGTTCAGAAGATCccaaacatttcttaatatcgAAGCGTGTAAGCGATACCAGAAGAGTGTAAGCGACATTTTGGGTCAAACGGAATAAATCAAACTAAAGCTCTCTTTACTGGCAAAAGTCAGCCATGATTTTTGTTATAAACAACTATAAATGGTACACAAAGTCATATCAAAGTACAGTAAACCTGAAATGTCACTTTCTGGTTCTCACCCTGGATATGAAACACTTGGTTATATTGCTTTGTGCTCAAGTGGATCCAGAGGCCATCTATTTATGTTTACTCTCCCTCTGGTGGTGGGAAGAGTCCACTACAAAGTTCTTCTCAGAATTCCAAGTCCAATATTCCAAAAATTCCAATATCATCAGCGAGACCCAGATTTATCGGGAACATTTTTGCTCACAAATACTTATTATGTCAGCAGACTAAATTCGCTGCAGTTTTGCTTTACCATCGACGCTGACAGTGACAGGTACGGGGCGAGAGGTGTGACTGCTCTGTGATGTCACACCGGACAGCGGTGAAAAAGCAGAGCTCGTTTTGGACGGGGGTCAAACCAGAGGGACTCTGAAATGGACACGGACAAACCTCAGCAGCAGTTCTCTGAAAATTACTCCGAGGTCACCGTTAGCTCGAGTGCAGATGTTCAGAATCGCCCGAGAAAAGACTGCGGGACACCTGAGAGCGTCCGGGGCGGAGGAGGGCGAGCGAGAGCGTACCCTTCGCCGTCCCGCAGGAGACACCGAACTACCTTCAGCAACGAGCAGCTGGAACAGCTGGAGTTAGCTTTCAGACAGAACCACTACCCTGATATCTACTACAGAGAGGAGCTCGCCAGAGCCACCAAACTCAACGAGGCTCGCATACAGGTGTGGTTTCAGAACCGGAGGGCCAAGCAGCGCAAGCAGGACCGCGTCTCTCAGAAAGCGCTGCCGGTGGCCGTGATGCCGGGACGAGGGCCTCTCTTCGGCAGCGTGTGCGTGTCTCCCTCCGCCGTGAGCCGGCAGTACCAGTGCGCCCATTCACTGCCGCACATCCCCCGCTTCCCCTCGGTGCTGCCCCCCGGAGGATACCCACCCCAGCCGTCCTCTGCTCCGTCATCGCTCTCCTCCAGACAGCCTGAAGACTGGTACCTGCGCGGCCTCGGACCAGCCACCGCTTCCGTGCTCTCCCTGGCCTCCGCGTCCACGCCGGAAACAACTAGTCCCTGGAACTAGAGCGCGCGCCGTTCCGCGAGCGCTTCACAAAGCAGAGCGAGTCAAGTTTTTCAGCGACAAAGAACGATCGACATTTTCTGTCTTTATTAAAGTTGCAACCGTCGCTTTATTACACAGACGTTTCTCTCAATTATTGCTGCGTCTACCtagacaaaaataatatgaatttatgTCGATTTTCTTTGTTAACACTGAACTGTTACAATTGAACTAGATTCGGTTTATATTGAACACACTGCAGACTTTATGTGAGGACTGTTATGAAAATGTCACACTAAGATGAAACGTACAATAGACCAATTGATTACAACAGATTTCCTTTCAGTCATGTACAGCTTTggtagaaataaattacacatggTTTATGTCAAGAGCTTCTTGCCATTTTGTGTACGTAAAATTAACAGATATGGGTCAaggacaatataaaaaaaaacaatatgtgttATGTTGACAGAAATGTGCTCTCAGTTGTTATGTTGTTTACatacagttttgaaaaaaaaaaaacattataacataACCAAGATACATTAGTATTGTTTCTGAATTTTA

Function

NR:

description
homeobox protein prophet of Pit-1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021984 adenohypophysis development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255262.1 True 2288 mRNA 0.45 3 4441892 4446288

Neighbor

gene id symbol gene type direction distance location
ttc7a ttc7a,LOC107586483,LOC107678602 coding downstream 4400 4404523 ~ 4437492 (-)
epcam epcam,LOC107707150,LOC107727388,LOC107699297 coding downstream 88141 4351284 ~ 4353751 (-)
thada thada,LOC107586496,LOC107590015,LOC107707143,LOC107727367,LOC107590014 coding downstream 116417 4245731 ~ 4325475 (-)
LOC122357001 LOC107699293,LOC107586477,LOC107727368,LOC107678540,LOC107707148 coding downstream 197459 4241527 ~ 4244433 (-)
haao haao,LOC107586504,LOC107699283,LOC107727361,LOC107590002,LOC107678607,LOC107707146 coding downstream 374286 4062472 ~ 4067606 (-)
socs5b socs5b,socs5,LOC107727375,LOC107586485,LOC107708402,LOC107699300 coding upstream 15734 4462022 ~ 4471950 (-)
galm galm,LOC107586487,LOC107699302 coding upstream 160936 4607224 ~ 4611108 (-)
hells hells,LOC107727385,LOC107586490,LOC107699304,LOC107708407,LOC107678596,LOC107589556 coding upstream 180100 4626388 ~ 4672250 (-)
gbf1 gbf1,LOC107708418 coding upstream 391490 4837778 ~ 4904092 (-)
ninl ninl,LOC107708420,LOC107589549,LOC107699311,LOC107727377,LOC107582480,LOC107678585 coding upstream 485131 4931419 ~ 4955793 (-)
G90750 NA non-coding downstream 28121 4390355 ~ 4413771 (-)
LOC122356721 NA non-coding downstream 94368 4338842 ~ 4347524 (-)
G90633 LOC107590022,LOC107586473,LOC107758132,LOC107666233 non-coding downstream 427891 4010173 ~ 4014001 (-)
G90629 LOC107586470,LOC107698167 non-coding downstream 490295 3945108 ~ 3951597 (-)
G90632 NA non-coding downstream 497628 3943873 ~ 3944264 (-)
G90802 epas1,LOC107586486,LOC107727363,LOC107699276,LOC107589559,LOC107708405 non-coding upstream 98733 4545021 ~ 4570758 (-)
G90786 NA non-coding upstream 102823 4549111 ~ 4622804 (-)
G90785 NA non-coding upstream 114488 4560776 ~ 4584961 (-)
G90842 NA non-coding upstream 304144 4750432 ~ 4750968 (-)
G90846 NA non-coding upstream 383463 4829751 ~ 4833144 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 386479 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 485937 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 1006312 3422753 ~ 3435580 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other downstream 1143343 3281337 ~ 3298549 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other downstream 1196996 2990418 ~ 3244896 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 226678 4672966 ~ 4689168 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other upstream 244594 4690882 ~ 4779732 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 1474214 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 1615397 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1773887 6220175 ~ 6227272 (-)

Expression


Co-expression Network