lgals3a (lgals3a,LOC107736502,LOC107683071,LOC107705436,LOC107602963,LOC107553209,LOC107654953)


Basic Information

Item Value
gene id lgals3a
gene name lgals3a,LOC107736502,LOC107683071,LOC107705436,LOC107602963,LOC107553209,LOC107654953
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14178150 ~ 14184493 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255292.1
GTTCACAATGTTTTCAAACACGCCGTTGAAAGCCCTCAGTGTTCCACTTATCACCTCACTTCCTGTATAGAGTTTAGTAATTCTGACTTTCGGATCTTTTCGGGCGACGGGACCTGGTGCTGCTCTGAACCCCTGATCCTCGGACCGCAGGCCCTGATCCAGTCGAGGCCATGGCTGACTTTTCGCTTGCTGACGCAATCTCAGATGATGTTTCTAGTGAAGCATCGAAAACCAAACACACCAATCCATCAGCTCCTGGAAATGGGGCTCCGCCTCCCACTAACCCTGGCTGGCCTGGTGCGGCCCCTGGTGGCCCTCATTTCCCACCCTCAGGAGGCCCCGCTCAACCAACAGCACCTGGCTTCCCTCAGACTGGGCCGTCTGCCCCCGGTCCATTTCCACCTGGCCCAGGAGCCCCAGGCCAGTTTCCCGGAGCCCCTGCTGCCCCGGGTGGATACCCTCCAGGACCGGGTGTACCTGGACAGTTCCCCTCCAACCCTGGAGCTCCAGGACAGTTCCCCTCAATGCCAGGCCAGTTCCCACCTGGCGGTGCACCCGTGCCATACCACGTTCCTGGACAGTTCCCCTCCCCACCTGGGGCTCCACAGGGCCCGTATCCAAATGTGCCTTACCCACCGGGTCCATCTGGGCCTGGCATGTATGGCCCAGGAGGCCCTGGTGCCTTTCCACCAGATGGAGGCCCTGGATATGGAGGAGGAATGTTTCCCCCAGTACCACCAGGAGCATGGGGTGCCCCCGGAGGGGGCTTCCTTCCTCAACCTGGCCCACCAGGAGGCTTTGGTCCAGGGCCGATGGGACCATACGGAGGACCTGCAGCTCCAGGTGGAATGCTGccaTTGCCGTACGATCTTCCGCTGCATGCTGGGATAATGCCCCGCCTCGTGATTACTATAGTGGGCGAACCAGTACCAGGAGgaaacaggtTCCACATAGATTTTGTGAGGGGGCATGACGTGGTTTTCCATTTCAACCCTCGTTTCCATGAGAACACCATCGTACGGAACACACAGTTTGGGGGCTGCTGGGGTCcggaagagagggagggaggctTTCCCTTTGTGCAGGGCAGACAGTTTGAGCTGAAGATCCTGGTGGAGACGGACGGGTTTAAGGTGGCCGTGGACGGCGTTCATCTGCTGGAGTTTGAGCACAGAACAGGCGGGATGGAGGACGTCAATCGCCTGCACATAGAGGGAGACCTCGTGCTGTTCAGCGTGGCCCCCAACATGATCTAAATCAAAGGGGCGCGGGAGCAATTTGACAATGTTGAGGAGACACATTAAGTCATTGGTCCTTGAAAAGTATAGATTATCTTCAAAAAAGTGGGACGAATAGAAATTCCTAAAAGAAGATGTATCCGTTATCTTCGTCTCAGTTGCAAATTAGTTTCAAATATATGAtctaaacaaatgaaattaGAAAGAAAGTTTTTGGCCGCCCCTCTGAAGTACCATAACtttctgtttttcctcattCTGTCACCCGTCAGAATGCATTATGCTAGTTAAccttttgcatgttttgttaAAACGAAACGTATACTGTTCCAAACACGCCTATGGTATGACCTTCAGTATTAGCATGGTATAGTAAGTACCAAGACCCATGAGGGGTCATAAACTCGAATTCAGGAAACTGCGGCCCAGAGCTGTGACACTGTGCTGAATTACTTCAGATCTAAATGgctgaatattattttatttggtatGGGTTTTggaaaatgttcattattttgaataaaaccaTAGTAATGAAATCATTGTGGAGATAAGTGAATAATTATGtctgaataaatgctgtattacCCCGATCAAAA
>XM_043255293.1
ATGTTTTCAAACACGCCGTTGAAAGCCCTCAGTGTTCCACTTATCACCTCACTTCCTGTATAGAGTTTAGTAATTCTGACTTTCGGATCTTTTCGGGCGACGGGACCTGGTGCTGCTCTGAACCCCTGATCCTCGGACCGCAGGCCCTGATCCAGTCGAGGCCATGGCTGACTTTTCGCTTGCTGACGCAATCTCAGATGATGTTTCTAGTGAAGCATCGAAAACCAAACACACCAATCCATCAGCTCCTGGAAATGGGGCTCCGCCTCCCACTAACCCTGGCTGGCCTGGTGCGGCCCCTGGTGGCCCTCATTTCCCACCCTCAGGAGGCCCCGCTCAACCAACAGCACCTGGCTTCCCTCAGACTGGGCCGTCTGCCCCCGGTCCATTTCCACCTGGCCCAGGAGCCCCAGGCCAGTTTCCCGGAGCCCCTGCTGCCCCGGGTGGATACCCTCCAGGACCGGGTGTACCTGGACAGTTCCCCTCCAACCCTGGAGCTCCAGGACAGTTCCCCTCAATGCCAGGCCAGTTCCCACCTGGCGGTGCACCCGTGCCATACCACGTTCCTGGACAGTTCCCCTCCCCACCTGGGGCTCCACAGGGCCCGTATCCAAATGTGCCTTACCCACCGGGTCCATCTGGGCCTGGCATGTATGGCCCAGGAGGCCCTGGTGCCTTTCCACCAGATGGAGGCCCTGGATATGGAGGAGGAATGTTTCCCCCAGTACCACCAGGAGCATGGGGTGCCCCCGGAGGGGGCTTCCTTCCTCAACCTGGCCCACCAGGAGGCTTTGGTCCAGGGCCGATGGGACCATACGGAGGACCTGCAGCTCCAGGTGGAATGCTGCCACCACATAGACCACCATATTTTTGAGAGCAATGAACagctcagccaatcacagaaGGAGGACAGCACCTCAGCCATCACAAAGACCAGAGTTAGCATCCAATCAGAGCTCAAAGTTCTGGTCACTGAGCACATAGTTCATGCTGATATATCACATATT

Function

symbol description
lgals3a Predicted to enable IgE binding activity and laminin binding activity. Predicted to be involved in several processes, including leukocyte chemotaxis; negative regulation of extrinsic apoptotic signaling pathway; and positive regulation of calcium ion import. Predicted to act upstream of or within RNA splicing; innate immune response; and mRNA processing. Predicted to be located in extracellular region. Predicted to be part of spliceosomal complex. Predicted to be active in several cellular components, including extracellular space; immunological synapse; and nucleus. Human ortholog(s) of this gene implicated in asthma. Orthologous to human LGALS3 (galectin 3).

NR:

description
PREDICTED: galectin-3-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255292.1 True 1837 mRNA 0.52 6 14178150 14184493
XM_043255293.1 False 1007 mRNA 0.58 4 14182359 14184486

Neighbor

gene id symbol gene type direction distance location
LOC122356234 synj2bp,LOC107705435,LOC107654920,LOC107736856,LOC107553210,LOC107580248 coding downstream 1276 14172637 ~ 14176874 (-)
LOC122356233 LOC107705434,LOC794838,LOC107553207,LOC107683381,LOC107654921,LOC107602927 coding downstream 6295 14164734 ~ 14171855 (-)
pacs2 pacs2,LOC107654955,LOC107681285 coding downstream 18984 14129394 ~ 14159166 (-)
dcaf5 dcaf5,LOC107705431,LOC107654956,LOC107681972,LOC107553205,LOC107739884,LOC102780996 coding downstream 51065 14113386 ~ 14127085 (-)
actn1 actn1,LOC107705429,LOC107602958,LOC107654957,LOC107739883,LOC107680897,LOC103359947,LOC108440922 coding downstream 69809 14083483 ~ 14108341 (-)
cdkn3 cdkn3 coding upstream 8021 14192514 ~ 14200779 (-)
sos2 LOC107654947,LOC107602966,LOC107736529,LOC107683816,LOC107553213 coding upstream 24882 14209375 ~ 14224126 (-)
l2hgdh l2hgdh,LOC107682613,LOC107736610,LOC107705441,LOC107654945 coding upstream 42705 14227198 ~ 14232322 (-)
cdkl1 cdkl1,LOC107705442,LOC107736652,LOC107553215,LOC107602970,LOC107683176,LOC105890986 coding upstream 51607 14236100 ~ 14243270 (-)
map4k5 map4k5,LOC107602968,LOC107705444,LOC107736580 coding upstream 58909 14243402 ~ 14267479 (-)
G93879 NA non-coding downstream 247856 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 489524 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 511890 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 514239 13661750 ~ 13663911 (-)
G93583 NA non-coding downstream 522801 13654379 ~ 13655349 (-)
G93905 NA non-coding upstream 3046 14187539 ~ 14189904 (-)
G94003 NA non-coding upstream 687939 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 796503 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 1094914 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 1420194 15604687 ~ 15605713 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 13736 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 95360 14079532 ~ 14082790 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 266313 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 273448 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 459836 13693026 ~ 13718314 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 840339 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 1042839 15227332 ~ 15253357 (-)
G94128 NA other upstream 1380124 15564617 ~ 15583917 (-)
G94147 NA other upstream 1457538 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 1501777 15686270 ~ 15720816 (-)

Expression


Co-expression Network