cnih1 (cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446)


Basic Information

Item Value
gene id cnih1
gene name cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14191182 ~ 14196252 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255297.1
cggtcacgtgacatACAGCTGTCTCAACGTCACCGCAGTCGTCGGTCTGGATAATTCCACATGAGCGAAAAATGGCGTTCACATTCGCGGCCTTTTGTTATATGCTGGCGCTATTGCTGACGGCGGCGCTTATCTTCTTCGCTATTTGGCATATAATTGCATTTGATGAGCTGAAGACCGACTATAAGAATCCTATAGACCAATGTAACACGTTAAACCCGCTCGTCTTGCCGGAGTACCTCATTCATGTGTTCTTCTGCGTAATGTTCCTGTGCGCCGCAGAATGGCTGACTCTTGGACTCAACATGCCCCTGCTGGCCTATCACGTCTGGAGgtACATGAGCCGCCCTGTGATGAGTGGACCTGGATTGTATGACCCCACTACGATAATGAACGCAGATATTCTGGCATACTGTCAGAAGGAGGGATGGTGCAAACTTGCATTCTACCTCCTCTCATTCTTCTACTATCTTTATGGGATGATCTACGTTTTGGTGAGTTCCTAAACTGGAAGCAGCTGGAAAGCATACAAGGAAGCGTTTGAGATGCTGATTTTAAAACCCAAATGGAGCTGAATTTGGACTCGGCCATCTCTCTCAGTTCTGCTAGGCTGTTTCAAAAGGACACTGACTTTATTTACACCTCATTGGCCAAGAACGATCCAGGACGCAAGCAGCCTGCACAACTCCAGAAccacacatgcaaaaataaatgattaccAACTCTTCAGTACAAGCTGTTTAGACTTATATACACATGTCGCACCAATGCCAAAGCACTTCACACACtgaaagcatcagcaggtgagATGAAACGGTTTTCATTGACCAGATCGTGTCCAAAGCGGAGGCACAAGGGCTTCAACACTATACCACTGATGGAAATGTGCAAAgattttacttttgtgttttcagaCTGTGGGACAAAATAAAGATCTTGATTGTAGCATTTTTACAGActtattttatcttaaatatattactgCCTTCTAGCTCAGTCAGTTCTTTAATTTGTCCTTCAGAGTGGTGTGCTGCTTTAGTGGTCCATGATCTTGTAAGTCCCTGTTTTTGAGCTCATGCTGGTAGTCTGGTTTATGTTGATGGTTCTTATCAGATGACTGCTCTATTTCAAGTGTGTTAAAACCAATGTTTGCTGTCTTTTTTGGTAGGAGATGAGAACTGATGCTTTCAGTGTGTCGAATGCTTTACTTCGTTCATACACCCTGGAAATACTCcacatgtaacttttttttttgcttttaaatttgtgtGCATTTCGTATTTCTAAGTGTAattgtttttctgattttgttttatttcgaTTATGTTTTTGTGCGTTAGAGATGAGCGTGGACACCATTTTGAATATTTCGGTTTGATGTTGGCATTTTCTCAGTGTGCCAAGATGCCATTTTCTTTTAGCCTGTAATCACCAAACAGAGGCTTTGGTCCTGAGGTGATGCTGTAGTTTTTTTGGATTCAGAGCAGAGCTGTGTGGAAGGATTCTTTGCCACACACTAATAGCTGTTCATAATCGCCAAGCTGGACCACCAAGGTGATATTCAGAATaagttattttgattttgtatttgatttccCTGTGATTTAGgtattgtttgcattttttttccccctgtgtgtgtgaaccCAGCATTATGTGCATTTGAATGTTAAAGTCTTGCAAGAgctatagtaaaaaaaaagttttgtttgttttttttttgcttgtaatATTGCTTAAAGTTCCCAATAAAGCCCCCATAGACAAATAACAAA

Function

symbol description
cnih1 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CNIH1 (cornichon family AMPA receptor auxiliary protein 1).

NR:

description
PREDICTED: protein cornichon homolog 1 isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255297.1 True 1775 mRNA 0.41 5 14191182 14196252

Neighbor

gene id symbol gene type direction distance location
LOC122356869 ttc9,LOC107602957,LOC107553202,LOC107654962,LOC107739879 coding upstream 175312 14012249 ~ 14015870 (+)
si:ch211-67f13.7 LOC107602918 coding upstream 254313 13930623 ~ 13936869 (+)
mfsd2aa mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 coding upstream 261945 13918198 ~ 13929237 (+)
LOC122356401 agpat4,LOC107739871,LOC107553196 coding upstream 332377 13852587 ~ 13858805 (+)
LOC122356827 LOC107736840,LOC107664175,LOC107568695,LOC107747274 coding upstream 389943 13798911 ~ 13801239 (+)
LOC122356518 LOC107705440,LOC107654948,LOC107736540,LOC107682154,LOC100538248 coding downstream 4598 14200850 ~ 14209385 (+)
dmac2l atp5s,LOC107705443,LOC107602971,LOC107654946,LOC107736634,LOC107553216 coding downstream 36122 14232374 ~ 14236033 (+)
atl1 atl1,LOC107705445,LOC107602974,LOC107736665,LOC107682422,LOC107553217 coding downstream 72125 14268377 ~ 14276439 (+)
tmx1 tmx1,LOC107654918,LOC107602932,LOC107736746,LOC107683560,LOC107705366 coding downstream 143639 14339891 ~ 14344861 (+)
esr2b LOC107736782,LOC107683586 coding downstream 181342 14377594 ~ 14393187 (+)
G93592 NA non-coding upstream 29862 14031382 ~ 14161320 (+)
G93685 LOC107553176,LOC107654957,LOC107705429,LOC107602958 non-coding upstream 99950 14090525 ~ 14091232 (+)
G93659 LOC107654964,LOC107680818,LOC107602919,LOC107705424,LOC107553200,LOC107739876 non-coding upstream 240577 13945330 ~ 13950605 (+)
G93643 NA non-coding upstream 260895 13761052 ~ 13930287 (+)
G93649 NA non-coding upstream 328522 13862051 ~ 13862660 (+)
G93723 NA non-coding downstream 28731 14224983 ~ 14227711 (+)
G93733 NA non-coding downstream 47156 14243408 ~ 14245542 (+)
G93736 NA non-coding downstream 52513 14248765 ~ 14249522 (+)
G93743 NA non-coding downstream 80363 14276615 ~ 14276875 (+)
G93745 sav1,LOC107705447,LOC107654943,LOC107736858,LOC107602931,LOC107682971,LOC107553191 non-coding downstream 86517 14282769 ~ 14284777 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other upstream 2189 14185315 ~ 14188993 (+)
G93613 NA other upstream 281579 13739607 ~ 13909603 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other upstream 430448 13749135 ~ 13760734 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 1032742 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 1602184 12586886 ~ 12588998 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 157863 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 910206 15106458 ~ 15226722 (+)
fam135a LOC107747270,LOC107665594,LOC107736843,LOC107664195,LOC107564672 other downstream 1058822 15255074 ~ 15275234 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other downstream 1099597 15295849 ~ 15314656 (+)
LOC122356934 LOC107747267,LOC107665602,LOC107601027 other downstream 1118562 15314814 ~ 15318177 (+)

Expression


Co-expression Network