LOC122356541 (LOC107655439,LOC107726945,LOC107601886,LOC107559330,LOC107743503)


Basic Information

Item Value
gene id LOC122356541
gene name LOC107655439,LOC107726945,LOC107601886,LOC107559330,LOC107743503
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9474220 ~ 9481419 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255354.1
ATGACGCAATTTTCCCGCCACGGTGTATTGTGCCAAGCTGAGCCCTGGAACGTGCTTGTTATAGTGCAAGGATTATTAGTTTTACATTGTGTGTCTTTCAAAACCCTGCAGCGATGCCTACGGTTCACGACTGGATCAATAACCCGCTGGGTGTTGTCGATGGGCTGTTCGCCCAGAGTAACTCCAGTCCAGACTGGGAGAAAAGAGTTGTGGAGTATTTCAAAGAGAAACTGAAACTGAACGACTCTCATACATGGGTCCCATCTCTGAATGATGTTCCCCTGCACTACCTGAAGCCTAATAGCCTCGTGAAATTCCGTTGCATGGTCCAGGATATGTTTGATCCAGAATTTTTCATGGGTGTTTATGAGACGAACGATCCATCATCAAACTCTAAACAGGTGAAATGTGGAAAATATAAAGATATCACAGAGGGCGGGCAGGTGGACTTCAACTCAAGAAACGCAGTTACTTCAGAGAGACAGACTTTTTATTGTGTCCCCATCCCGGGAGAATCACAGTGGGTCAAAGAAAGCTATGCAGGTACCAGCCAGGCGCGAGTGGTGCCCTCCACTTCCTATGTCCCAAACAGGCAAAAACGCAGCTATGAAGAGGACGATGAGATGGACACACAGACCGAACAGATGAAAGATGTTAGTCAAGGAGCTCAAAGCTCTGCAGAGTCTCATGGCAACACCGAGCCGAAGCGTCAGGAGACTGAAGCTCCGAGCCACGGCTCCTCTTCGTCACACTGCACATCCAATCTGGACCTCAACTTCCCTTTGTCTGGAGAAAAGGGCCCAGCTTGTCTTGTTAAGGTATATGAAGACTGGGACAGTTTCAAACTGAATGACATGTTGGAAGTATTTGGCATCCTTTCTGTGGACCCTGCCTTGAGCGTGATTGCAGATGAAAGAGAGGCGTCTTCGCTGCTGGACCCCACAGAAGGCATGGAGACTGTGGAGGAGCAAAGAGTTCACAGCCCACCAGCATCCCTCGTACCGCGACTGCATATGCTGTACGCCCAGCCTCTAGTGCACAACAACCCACTACTGCCCTCTAGTGCACCGGAGAATAACAACGACTATTTAAGCAGTGTTCTTGGGGAACTGGCTTCAGTCCGGGCAGAGCTGCTCACCTACCTCACACACATCCTGATGGGGGATTCACTTGCTGCGGAGTACCTCATTCTCCATCTCATCTCCAATGTatACAGCAGACGGGATGTTCTTCCTTTGGGCAAATTCACCTTAAATCTCAGTGGCTGTCCTCACAGCTCTCCATACACTGAGCATCTCTACAAAGTTATCCAACAGCTTGTGCCATCTTCATACCGGCTATGCATGAGCCTGCATAACATGAACAACCAGAGGATGGTGCCCCGAAAAGATTATACAGCTAACCGCCTGGTGAGTGGAACACTTCAGTTGGCCAATAACACGTCATTGTTTCTGGATGAAACACAGCTGGAGCAGGGCCAACTGGACGCCACAGGTGTGCGAAACATCACCGCTCTGGGCAACCTGATCTCCTGGCAGAAGGTTGATTACGACTTCAACTACCACCAGATGGAATTCCCCTGCAATATTAACGTGCTTATCACATCTGAGGGCCGATCGCTCCTCCCGTCTGACAGTCAGGTTCACCTGCGGCCCACCCTGAACCCACCTAACCTGGAGGAGTACCTGAGCGCCGTTCAGGTGGCGCAGGTTCCGTCTCAGCTCAACAAGTATCGCATCTATCTGAGTGTGGCGCGTGGCCTCAATTATACCATTTCAGATGAGATCACAAAGGCAGTAGAAGAGGACTTTGTAGACATGCGAAAAGATGACCCTCAGAGTATGTCTGCGGAAGACCTTCATAGGCTGCTGGTTGTTGCAAGGTTGCTCTCATTAAGTCACGGACAGAACACACTCTCCAGAGATGGCTGGATAAAAGCCAAGCAGTTAGAGGCTTTGAGAATAAGTCGAACACAGCAGCAGAAATGTATGAACGGAAATGAgccttaaaatatatttatattttcgtGTACTTCAACAGTTACAATACTTGTTTATAATCtggattaaaatgtaatgtttttcatatGGCATATGGCTTCTTGTACAGttccatttttttactttattttaaacatgtgGGAAGACTTACAGGCACTGGTGAAGATTTTCAGTGTTTGCATTGTTCAGTTTTGGTTTTGATTACATGCAATGTGTAGTTACACTCATATGCCGATGCAAATATTTGAAAGTATAACTGCCTTACCACAAATACTTACATCTATGGCACAAGGGTACTaggaaaaataaagttttcCAGAACTTTG
>XM_043255355.1
ATGACGCAATTTTCCCGCCACGGTGTATTGTGCCAAGCTGAGCCCTGGAACGTGCTTGTTATAGTGCAAGGATTATTAGTTTTACATTGTGTGTCTTTCAAAACCCTGCAGCGATGCCTACGGTTCACGACTGGATCAATAACCCGCTGGGTGTTGTCGATGGGCTGTTCGCCCAGAGTAACTCCAGTCCAGACTGGGAGAAAAGAGTTGTGGAGTATTTCAAAGAGAAACTGAAACTGAACGACTCTCATACATGGGTCCCATCTCTGAATGATGTTCCCCTGCACTACCTGAAGCCTAATAGCCTCGTGAAATTCCGTTGCATGGTCCAGGATATGTTTGATCCAGAATTTTTCATGGGTGTTTATGAGACGAACGATCCATCATCAAACTCTAAACAGGTGAAATGTGGAAAATATAAAGATATCACAGAGGGCGGGGTGGACTTCAACTCAAGAAACGCAGTTACTTCAGAGAGACAGACTTTTTATTGTGTCCCCATCCCGGGAGAATCACAGTGGGTCAAAGAAAGCTATGCAGGTACCAGCCAGGCGCGAGTGGTGCCCTCCACTTCCTATGTCCCAAACAGGCAAAAACGCAGCTATGAAGAGGACGATGAGATGGACACACAGACCGAACAGATGAAAGATGTTAGTCAAGGAGCTCAAAGCTCTGCAGAGTCTCATGGCAACACCGAGCCGAAGCGTCAGGAGACTGAAGCTCCGAGCCACGGCTCCTCTTCGTCACACTGCACATCCAATCTGGACCTCAACTTCCCTTTGTCTGGAGAAAAGGGCCCAGCTTGTCTTGTTAAGGTATATGAAGACTGGGACAGTTTCAAACTGAATGACATGTTGGAAGTATTTGGCATCCTTTCTGTGGACCCTGCCTTGAGCGTGATTGCAGATGAAAGAGAGGCGTCTTCGCTGCTGGACCCCACAGAAGGCATGGAGACTGTGGAGGAGCAAAGAGTTCACAGCCCACCAGCATCCCTCGTACCGCGACTGCATATGCTGTACGCCCAGCCTCTAGTGCACAACAACCCACTACTGCCCTCTAGTGCACCGGAGAATAACAACGACTATTTAAGCAGTGTTCTTGGGGAACTGGCTTCAGTCCGGGCAGAGCTGCTCACCTACCTCACACACATCCTGATGGGGGATTCACTTGCTGCGGAGTACCTCATTCTCCATCTCATCTCCAATGTatACAGCAGACGGGATGTTCTTCCTTTGGGCAAATTCACCTTAAATCTCAGTGGCTGTCCTCACAGCTCTCCATACACTGAGCATCTCTACAAAGTTATCCAACAGCTTGTGCCATCTTCATACCGGCTATGCATGAGCCTGCATAACATGAACAACCAGAGGATGGTGCCCCGAAAAGATTATACAGCTAACCGCCTGGTGAGTGGAACACTTCAGTTGGCCAATAACACGTCATTGTTTCTGGATGAAACACAGCTGGAGCAGGGCCAACTGGACGCCACAGGTGTGCGAAACATCACCGCTCTGGGCAACCTGATCTCCTGGCAGAAGGTTGATTACGACTTCAACTACCACCAGATGGAATTCCCCTGCAATATTAACGTGCTTATCACATCTGAGGGCCGATCGCTCCTCCCGTCTGACAGTCAGGTTCACCTGCGGCCCACCCTGAACCCACCTAACCTGGAGGAGTACCTGAGCGCCGTTCAGGTGGCGCAGGTTCCGTCTCAGCTCAACAAGTATCGCATCTATCTGAGTGTGGCGCGTGGCCTCAATTATACCATTTCAGATGAGATCACAAAGGCAGTAGAAGAGGACTTTGTAGACATGCGAAAAGATGACCCTCAGAGTATGTCTGCGGAAGACCTTCATAGGCTGCTGGTTGTTGCAAGGTTGCTCTCATTAAGTCACGGACAGAACACACTCTCCAGAGATGGCTGGATAAAAGCCAAGCAGTTAGAGGCTTTGAGAATAAGTCGAACACAGCAGCAGAAATGTATGAACGGAAATGAgccttaaaatatatttatattttcgtGTACTTCAACAGTTACAATACTTGTTTATAATCtggattaaaatgtaatgtttttcatatGGCATATGGCTTCTTGTACAGttccatttttttactttattttaaacatgtgGGAAGACTTACAGGCACTGGTGAAGATTTTCAGTGTTTGCATTGTTCAGTTTTGGTTTTGATTACATGCAATGTGTAGTTACACTCATATGCCGATGCAAATATTTGAAAGTATAACTGCCTTACCACAAATACTTACATCTATGGCACAAGGGTACTaggaaaaataaagttttcCAGAACTTTG

Function

NR:

description
PREDICTED: mini-chromosome maintenance complex-binding protein isoform X1

GO:

id name namespace
GO:0000084 mitotic S phase biological_process
GO:0007062 sister chromatid cohesion biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255354.1 True 2326 mRNA 0.47 16 9474220 9481419
XM_043255355.1 False 2323 mRNA 0.47 16 9474220 9481419

Neighbor

gene id symbol gene type direction distance location
tial1 tial1,LOC107655435,LOC107726955,LOC107743507,LOC107666496 coding downstream 23871 9443786 ~ 9450349 (-)
LOC122357054 itprip,LOC107726956,LOC107666382,LOC107601878,LOC107655423,LOC107559320,LOC107743607 coding downstream 64689 9405901 ~ 9409531 (-)
plaua LOC107666402,LOC107726940,LOC107601811 coding downstream 87501 9382396 ~ 9386719 (-)
vcla vcla,LOC107666493,LOC107726962,LOC107655431,LOC108426801 coding downstream 96771 9342453 ~ 9377449 (-)
adka adka,LOC107601874,LOC107666490,LOC107743514,LOC107655429 coding downstream 136548 9207546 ~ 9337672 (-)
csgalnact2 csgalnact2,LOC107666416,LOC107559332,LOC107655442 coding upstream 10150 9491569 ~ 9497713 (-)
ret ret,LOC107726966,LOC107666456,LOC107743501,LOC107655443 coding upstream 16815 9498234 ~ 9519977 (-)
si:dkey-192p21.6 si:dkey-192p21.6,LOC107601802,LOC107726935,LOC107666356,LOC107655416,LOC107559314,LOC100702339 coding upstream 41808 9523227 ~ 9548967 (-)
sgpl1 sgpl1,LOC107726953,LOC107601887,LOC107655444,LOC107559334,LOC107666355 coding upstream 71868 9553287 ~ 9564073 (-)
pdlim1 pdlim1,LOC107666525,LOC107726967,LOC107601889,LOC107655446,LOC107743498,LOC107559336 coding upstream 87679 9569098 ~ 9574575 (-)
G92367 LOC107666417,LOC107726946,LOC107655437,LOC107743505,LOC107601798 non-coding downstream 19913 9451223 ~ 9454307 (-)
G92314 NA non-coding downstream 23532 9450396 ~ 9450688 (-)
G92295 gsto1,gsto2,LOC107655421,LOC107743610,LOC107666511,LOC107601880,LOC107726961,LOC107559317,LOC107666561,LOC107726960,LOC107559318,LOC107743609,LOC107601879 non-coding downstream 68560 9398804 ~ 9405660 (-)
G92289 NA non-coding downstream 133150 9340345 ~ 9341070 (-)
G92277 NA non-coding downstream 339735 9134152 ~ 9134485 (-)
G92391 NA non-coding upstream 113607 9595026 ~ 9595280 (-)
G92407 NA non-coding upstream 159050 9640469 ~ 9641201 (-)
LOC122356802 NA non-coding upstream 217594 9699013 ~ 10050383 (-)
G92427 NA non-coding upstream 219214 9700633 ~ 9700864 (-)
G92548 NA non-coding upstream 758847 10240266 ~ 10243061 (-)
G92267 NA other downstream 358669 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 1426319 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 1657841 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 2974647 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 3077794 6358201 ~ 6396426 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 692994 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1150831 10632250 ~ 10634566 (-)
G92819 NA other upstream 1443525 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 1719133 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 2043984 11525403 ~ 11532457 (-)

Expression


Co-expression Network