rhoua (rhoua,LOC107601857,LOC107676561,LOC107666438,LOC107725498,LOC107743528,LOC107552943)


Basic Information

Item Value
gene id rhoua
gene name rhoua,LOC107601857,LOC107676561,LOC107666438,LOC107725498,LOC107743528,LOC107552943
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8932964 ~ 8939928 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255405.1
AGTTCACGGATGAGCGCCCTTCCCAGTGGATGATGTCATGGGCTCTGTCTCAAATCCTAGTCAGCAGCCTGCCCTGAGAACGAGCACGAAAGCTGCGCGCGCCTCGAAACGCGATCTAACGGGCGGCGGACGAGGCTTTGAGACACGGCCCCGGTGTTTGGGAGTGAAGCGCTCGCTCAGATCAGTTCCAGTGAGGGGCGGAGGAGGGCATAACGGCAGAGTGCGTGTGGGCTTCGTGTTTATTTTTGCCCTCGGAGTTGCGTTGTTTCACACCCAGATAAAGCAAACGCTTCTTGATTTGAAATGTAGCTTTTAGCGGACTTTTCCCcttgcaaaaataaatggacGCCGCAGTGAAATCGGAGGCTGGTGCTCCGCTCTCTCATTCGCGAGTGGGATGAATCTCTGAAGCCGCCGGACGGTCCGTGTCTTCGGCGATGCCTCCGCAGGGAGGTGGAGAGTACAAGCCCGCTCCAGGTGCGCTGGTGCCGCCGGTTCCCCCGAGGAGATTCCGCGGCAGAGATCTGTCATCCGCCGTGAAGAGCCGCTTCGGGGCGGCAGCGGAGCGCAGGGTGAAGTGCGTGCTGGTTGGTGATGGTGCAGTGGGTAAAACTAGTCTCATTGTGAGCTATACCACCAATGGATATCCCACCGAGTATGTTCCAACAGCGTTTGACAACTTTGCAGCGGTTGTAGCTGTGGATGGCAAGCCTGTGAAACTTCAGCTTTGTGACACAGCCGGTCAGGATGAGTTTGACAAGCTCCGGCCGCTGTGCTACACCAATGCTGACGTCTTCTTGCTCTGCTTCAGTGTGGTAAGTCCCTCCTCTTTCCAGAATGTGAGGGAGAAGTGGGTGCCTGAGATCCGCCGGCACTGCCCGAGGGCACCAATACTGTTGGTGGGCACTCAGGCTGACCTGAGGCAAGATGTCAAAGTGCTCATCCAACTGGCCCAGTACAAGGAACGACCCGTGGACCCCCAagaggcgtgtgtgtgtgctgaggaAGTACAGGCCGTCTCGTACATGGAGTGCTCAGCGCTCACCCAGAAGAACCTCAAGGAGGTGTTTGACACGGCTATAGTGGCCAGCATCCAGTACTCGGACAGCCAGCAGCAGAAAAGGCTGAAGAAGCGGACGCCCGATAAAATGAGGAAGCTCTCCGAGTCCTGGTGGAAGAAATACTGCTGTTTGGCATAGACTCGAGAATATGATTGCATACTGTTGATATGAATGCGGTTAGACTGGAACTGGCTTTTTTTGGGATAGAAATGGACACTGATCCATCTGCTTTTTGAGACTGTGTTAGTGGATTAACCGGAGCACACATGGCCGTGAAATTAATTggacatttttagaaaatcagCCAGCTCTTGTGATGAAATGGAAAGATTCATAGAGACTCTGAGTTGTCTGCTACATTTTTAGGATCTGCTCTTCATTTGGAAAGTCCCAAGTTAACCTCAAATGCTTACGTGAACAATCCAGGGCGAGagtcatctttctttctttacctTATCTCTGTTGAAGAGGGTTTCAAGTGGACTTAAGGGTTGTTTTTCAATCAAATATCTAGCTGAGTCTGCCAGAACTTTCCTTCTTCATTTAGACACTGTGAAAAGCAACCTGGCCCGTCTCAGCATATTGTTGGTGTTTTAATACTTCTTTTGCTTATGGAATTGGATCACTTCCCTCATCTTGGAGAAGAAGTGATCAAGAGCGGGTTCGGTCTGATATACTCAAGTGCTCCTTTTGTGTATCTGTCAAAGCATTAAGTGTGATGTAGAGTACAAGCAGATGTCTGTACGCACTATCAACTTGACGTCACTGACATTTACCTTGTTGTCCTGTGAGGGTGAATGATTGTCCATTTTAGAGACAGCGGGACGCTGGCACATCTCTCCAGGCTGTCTTGTTTACATTTGGAGTTAAGTCCAGACCCAAACATGCTGTGAGGTCAGGGTCTTTGAGTGTAAGCGAGTACACTTAGCAGGCCAGTTGGATTGTATATCTGGTCATTGAACCTGAAGCTTCATCAAAAACAGTTTTGAGTGAAGCATTTCAGTCAGAGGAGTCTGACTGAGTCAGATTTTATTGGGTATGTATAGGAATGTACACTAATGTTTataagtttggggttggtaggatttttttaacatttgtaaaagaagtctctttttCTCACCAAGATTGCATTTAataagtacagtaaaaaaaataagcaatagtgtaaaatacaattacgattttaaaataactgttttcttatttaatatattttaaaatataatttattcctgtaatgacaaagctgaattatcacacaatccctcagaaatcattctattatgctgatttggtgattTTCCCTTTAATtaatctttgctgaataaaatgtattaggGGCTTTAAAAATCGTACTAACCCCAAACATGAACGTTAGcatgtgttgcacattttcaaagatgGAAAAACTTTTTCAGTGCACAGGTTTCATCCAGAAATTATTATGGCTGACATTGCTTTTCAGTTTCTGTTAGAACAAggcaatacatattttttgataCTTCATGCCTTTGCAATTTTTGGCACTATATATAGGTGAAATTTGTACATTAATACACCACTAGTGGCATCAAATGAAATGGTAATCTTATCAATCTCTTTATCATTCAGGGCTATTAGTATTTCTTTATGATCaagtaaaggtttttttttttttttttcccaattatgtttcaaattatttacttattaattaaatacagttattttgaaAACTGTGGATGTTAGTGGTGCAGACATGACAcgttaacaaacattttttacaaacagatctttaaaaaaaagctatttttccATATTTGCTTGAATGCATTTGGCACAcagttttatccaaagcaacttgcATTGCATTTACGGCATGTattccctgggaatcaaacccatgaccttgacATTGCTAGTCACTACTCTTTAAACTCTACTTCTACATTTGTCTCCCCTAAAGGATGACGTCAGCCACGTCACGCTTTGATAAGCACTGCAGTCCTGTCGTAAAAATAATCCTTTATAAAATACGTGGAGTGCTGCTCCAGGGCAAACTGCACTTTTTATCAGGCTTCTACATCGGATGAACTGGAAAAGTCACCTGCTGCTATGCAAAATGTGAATGAGCATAAGCTGAAAGACAGTGAGGAAAAGTTAATGTTTCACCGCATAATCTGGGGTTGGTGTGCAAGTATCTCTAACGTCGCTAGTggcaaacatttttctttcatgagcACAGAATAGACCAAGAATGAAATCAAGATGAGTTTTGTGTTCGCCACTTGTAATGTTAGACTGTTCCAGAATGTGGCGAGGCATTGAGAAAGAAGTGAGTAAGTTAGTGGCTCTGAGCAAGTGATTACAGTGCTGTAAACTGCAAGTGTTGAAGGTGGCATAGCGAGAGTTGAAACCCAAACCAAACAgttatattgatataaaaatccATTAATTAAGATTCTATAATGAAAGGAGGCGTATTGTAACAGTACGTTGTATTTAATCTTTTATCAAGAagtatttttgtgatgtttcaTATATTGTTAATCTCTTGTTGCGAGAACAGGCCTTAAGTTCAGACTGACCAAAGCATACGAGCGCTCCAGTGCTGTGCACTTTCACAGGGCTGGATCAATTACTGAGAGGTTTTTGACAAGTCGCCAAACTATCACTTCAAACACTCAGCGTGTTTATTCGCCGCTTTGATTTGCTCGTGAGTTGCATTGCAGTGTTGTATATTTTCTGTGAGTGAGCTCACTGCTGCCGCGGCCCACCAGACGGAACTGTTCAGGATCTGGTGGTCATTCAGACAAAGCTGACATGCAATAACAGAGACCTCCCTGTAGATTGTTATCTTTCTCagaataaatatactttttgtcTA

Function

symbol description
rhoua Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within atrioventricular canal development and regulation of cell adhesion. Is expressed in several structures, including cardiovascular system; central nervous system; liver; neural tube; and solid lens vesicle. Orthologous to human RHOU (ras homolog family member U).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoU

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07865 RHOU, WRCH1; Ras homolog gene family, member U

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255405.1 True 3930 mRNA 0.43 3 8932964 8939928

Neighbor

gene id symbol gene type direction distance location
rab4a rab4a,LOC107601855,LOC107666448,LOC107676603 coding downstream 15902 8908815 ~ 8917062 (-)
urb2 urb2,LOC107725468,LOC107666477,LOC107552917 coding downstream 40159 8878521 ~ 8892805 (-)
galnt2 galnt2,LOC107743534,LOC107725470,LOC107666462,LOC107676591 coding downstream 58963 8809451 ~ 8874001 (-)
cog2 cog2,LOC107601846,LOC107725477,LOC107666500,LOC107743537,LOC107676580,LOC107552949 coding downstream 142095 8782998 ~ 8790869 (-)
phactr2 phactr2,LOC107666519,LOC107601847,LOC107552951,LOC107743595,LOC107676579 coding downstream 154399 8744844 ~ 8778565 (-)
LOC122356963 tbp,LOC107725488,LOC107666436,LOC107601858,LOC107676577,LOC107552942 coding upstream 3507 8943435 ~ 8947042 (-)
cep68 LOC107725463,LOC107666566,LOC107601859,LOC107743522,LOC107676572,LOC107552940 coding upstream 17345 8957273 ~ 8963623 (-)
slc1a4 slc1a4,LOC107725464,LOC107552941 coding upstream 24220 8964148 ~ 8972341 (-)
si:ch211-217g15.3 LOC107676570,LOC107743520,LOC107725431 coding upstream 88423 9028351 ~ 9029769 (-)
znf511 znf511,LOC107725486,LOC107666508 coding upstream 129553 9069481 ~ 9072336 (-)
G92205 pgbd5,LOC107601786,LOC107725485,LOC107552948,LOC107743535 non-coding downstream 129558 8796871 ~ 8803406 (-)
G92195 sf3b5,LOC107601807 non-coding downstream 192875 8738975 ~ 8740089 (-)
G92021 pcnxl2,LOC107725461,LOC107601842,LOC107666362,LOC107743596,LOC107676602 non-coding downstream 254578 8667496 ~ 8678386 (-)
G92235 NA non-coding upstream 35157 8975085 ~ 8975334 (-)
G92251 echs1,LOC107743519,LOC107725439,LOC107601864,LOC107676592,LOC107666378 non-coding upstream 81882 9021810 ~ 9022207 (-)
G92263 NA non-coding upstream 168142 9108070 ~ 9108361 (-)
G92264 NA non-coding upstream 172367 9112295 ~ 9112589 (-)
G92265 NA non-coding upstream 172979 9112907 ~ 9113298 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 885063 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 1116585 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 2433391 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 2536538 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 2705692 6220175 ~ 6227272 (-)
G92267 NA other upstream 175165 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1234485 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1692322 10632250 ~ 10634566 (-)
G92819 NA other upstream 1985016 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2260624 11200552 ~ 11218985 (-)

Expression


Co-expression Network