sncga (sncga,LOC107601819,LOC107666408,LOC107725452,LOC107743564,LOC107563049,LOC108438198)


Basic Information

Item Value
gene id sncga
gene name sncga,LOC107601819,LOC107666408,LOC107725452,LOC107743564,LOC107563049,LOC108438198
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8215939 ~ 8222627 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255410.1
CGAGCTCCAGTATGGATGCGCTGAAGAAAGGATTCTCCATGGCTAAGGAGGGAGTGGTGGCTGCTGCCGAGAAGACCAAGGCCGgggtggaggaggcagctgcCAAAACCAAAGAGGGGGTCATGTATGTAGGCACAAAGACAAAGGAAGGTGTTGTGACGAGTGTAAACACAGTGGCCCAGAAAACGACTGAGCAGGCCAATCTCGTGAGCGACAGCGCTGTGGCTGGAGCAAATCAGATGTCAGAAAAGACGGTGGAGGGGCTGGAGAGTGTGGTTGCATCCACTGGCCTGGTCAAACCGGATGACCTGGAGAACACTGAGGGGGAGATATCGAAGCAGGAGGGAGCTGTGGAGCAGCCTACAGACGCCGGACAGTAGCTTTTTGTCGCGCTGAACATCCCTGTGACGCTCTGCTTCTCGCTTAAGAAGAGAGACTTCATTTTCTGCTAAGGGCCGTGGCTGAATATTATCATACTAAACCTCTGATGGACGCTAAATAATATccaacttcacacacacacacacacacacacacacacaaaaaaacaaaggcacCCAAATCTCTCTCTTGCTTTGTCCTCACAAACAACCTCTACTCACCTCACTTTACCACTTTTCCTCACATAAACCTATCCtattcacaagaaaaaaaagctcatgTAACCACACAGTATTATTTAGCTATGCAATATTCACATATACTGTGCAGTGCGTTATCAGATTTATGCAAACATTACATGCATGTGCTTGTGATCCGGACCTTTTTATAAAGGCAATGTCTAAAACCAGTTTTCCTCCTCCCAAAGGCTGTGAGGTCTAGATGATTTCTCACACAGTCAGTGAGAGAGCGGTTTTAAAACATTCTAGCCCAAACACACAGTCAGTGTAGTATCTGAGACAGTTTTCGAAACAGAATCACAGATAGGTAAATCCTAAGGAAAGAGGGCATCTGAAGTCTGTAAAGCATGAAGGTGGCTGGGTAAATCGGTTTCGGTATTACCCTAAATTGTGGTTATAGAGTGATAGGGTTTTTAGTAAGGCTCTTATATGTGGTTTTCTATAGCAGCCATTATAAACAACCCACAAAACCTGCGAATGACGTCAGAGCAGTTGCTAGGACACATGAGTTGTTTGTGGAAGCTATGTATGCTGCCTCACGACTACACTTTAACTGATCCTATTCACGCACTTGACTCCCGCATTGTTCCCCGCAAagtctaaaaacagctttttatttttaaatataccatctgtaataaattcagttttgtgaaaaacaaa
>XM_043255411.1
CGAGCTCCAGTATGGATGCGCTGAAGAAAGGATTCTCCATGGCTAAGGAGGGAGTGGTGGCTGCTGCCGAGAAGACCAAGGCCGgggtggaggaggcagctgcCAAAACCAAAGAGGGGGTCATGTATGTAGGCACAAAGACAAAGGAAGGTGTTGTGACGAGTGTAAACACAGTGGCCCAGAAAACGACTGAGCAGGCCAATCTCGTGAGCGACAGCGCTGTGGCTGGAGCAAATCAGATGTCAGAAAAGACGGTGGAGGGGCTGGAGAGTGTGGTTGCATCCACTGGCCTGGTCAAACCGGGGGAGATATCGAAGCAGGAGGGAGCTGTGGAGCAGCCTACAGACGCCGGACAGTAGCTTTTTGTCGCGCTGAACATCCCTGTGACGCTCTGCTTCTCGCTTAAGAAGAGAGACTTCATTTTCTGCTAAGGGCCGTGGCTGAATATTATCATACTAAACCTCTGATGGACGCTAAATAATATccaacttcacacacacacacacacacacacacacacaaaaaaacaaaggcacCCAAATCTCTCTCTTGCTTTGTCCTCACAAACAACCTCTACTCACCTCACTTTACCACTTTTCCTCACATAAACCTATCCtattcacaagaaaaaaaagctcatgTAACCACACAGTATTATTTAGCTATGCAATATTCACATATACTGTGCAGTGCGTTATCAGATTTATGCAAACATTACATGCATGTGCTTGTGATCCGGACCTTTTTATAAAGGCAATGTCTAAAACCAGTTTTCCTCCTCCCAAAGGCTGTGAGGTCTAGATGATTTCTCACACAGTCAGTGAGAGAGCGGTTTTAAAACATTCTAGCCCAAACACACAGTCAGTGTAGTATCTGAGACAGTTTTCGAAACAGAATCACAGATAGGTAAATCCTAAGGAAAGAGGGCATCTGAAGTCTGTAAAGCATGAAGGTGGCTGGGTAAATCGGTTTCGGTATTACCCTAAATTGTGGTTATAGAGTGATAGGGTTTTTAGTAAGGCTCTTATATGTGGTTTTCTATAGCAGCCATTATAAACAACCCACAAAACCTGCGAATGACGTCAGAGCAGTTGCTAGGACACATGAGTTGTTTGTGGAAGCTATGTATGCTGCCTCACGACTACACTTTAACTGATCCTATTCACGCACTTGACTCCCGCATTGTTCCCCGCAAagtctaaaaacagctttttatttttaaatataccatctgtaataaattcagttttgtgaaaaacaaa

Function

symbol description
sncga Predicted to enable cuprous ion binding activity. Predicted to be involved in several processes, including chemical synaptic transmission; regulation of neuron death; and synaptic vesicle endocytosis. Predicted to be active in axon terminus; cytoplasm; and neuronal cell body. Is expressed in brain; cranial ganglion; kidney; notochord; and testis. Human ortholog(s) of this gene implicated in Lewy body dementia. Orthologous to human SNCG (synuclein gamma).

NR:

description
PREDICTED: synuclein-like

GO: NA

KEGG:

id description
K24202 SNCG; gamma-synuclein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255410.1 True 1283 mRNA 0.45 6 8215939 8222627
XM_043255411.1 False 1262 mRNA 0.45 5 8215939 8222627

Neighbor

gene id symbol gene type direction distance location
bmpr1aa bmpr1aa,LOC107743563,LOC107666410,LOC107696892,LOC107706029,LOC107563048 coding upstream 24847 8171771 ~ 8191092 (+)
ldb3a ldb3,LOC107706030,LOC107666486 coding upstream 44688 8136584 ~ 8171251 (+)
opn4a opn4a,LOC107706026,LOC107696889,LOC107568552 coding upstream 84056 8111653 ~ 8131883 (+)
usp54a usp54a,LOC107706032,LOC107696887,LOC107568551,LOC107601774 coding upstream 108394 8061482 ~ 8107545 (+)
myoz1a myoz1a,myoz1,LOC107696874,LOC107726982,LOC107601804,LOC107666563,LOC107743622,LOC107568548 coding upstream 155030 8055209 ~ 8060909 (+)
zgc:193505 NA coding downstream 1143 8223770 ~ 8225251 (+)
nfkb2 LOC107725448,LOC107601822,LOC107666457,LOC107743559,LOC107563053,LOC107696896 coding downstream 15787 8238414 ~ 8256098 (+)
dna2 LOC107601824,LOC107666538,LOC107725437,LOC107676588,LOC107563052,LOC107743557,LOC107601826 coding downstream 68544 8291171 ~ 8300745 (+)
hnrnph3 hnrnph3,LOC107563056,LOC107601829,LOC107725497,LOC108438202,LOC107666547 coding downstream 96871 8319498 ~ 8324207 (+)
tacr2 tacr2,LOC107725458,LOC107601831,LOC107743552,LOC107563044,LOC107666460 coding downstream 140370 8362997 ~ 8368788 (+)
G91809 LOC107666404,LOC107706028,LOC107601778,LOC107563047,LOC107696890,LOC107743562 non-coding upstream 21621 8192326 ~ 8194318 (+)
LOC122356873 NA non-coding upstream 104661 8108341 ~ 8111278 (+)
G91681 NA non-coding upstream 390598 7823282 ~ 7825341 (+)
G91673 NA non-coding upstream 405835 7809871 ~ 7810104 (+)
G91594 NA non-coding upstream 1168692 7046941 ~ 7047247 (+)
G91825 NA non-coding downstream 46684 8269311 ~ 8269581 (+)
G91826 NA non-coding downstream 48535 8271162 ~ 8271394 (+)
G91828 LOC107725451,LOC107743558,LOC107696897,LOC107601823 non-coding downstream 58944 8281571 ~ 8282001 (+)
G91829 si:ch211-150i13.1,LOC107725451,LOC107743558,LOC107563050,LOC107696897 non-coding downstream 59528 8282155 ~ 8282587 (+)
G91831 NA non-coding downstream 78990 8301617 ~ 8370121 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 329249 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 376994 7836180 ~ 7838945 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other upstream 428632 7771560 ~ 7787307 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other upstream 1068721 7093144 ~ 7147218 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other upstream 1857922 6254603 ~ 6358017 (+)
G91833 slc37a1 other downstream 83859 8306486 ~ 8310824 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other downstream 443640 8666267 ~ 8683052 (+)
sf3b5 sf3b5,LOC107601807 other downstream 516409 8739036 ~ 8740095 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 803316 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 858221 9080848 ~ 9089121 (+)

Expression


Co-expression Network