dync2li1 (dync2li1,LOC107666473,LOC107698753,LOC107585292,LOC107747586)


Basic Information

Item Value
gene id dync2li1
gene name dync2li1,LOC107666473,LOC107698753,LOC107585292,LOC107747586
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6429382 ~ 6433028 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255440.1
TGTGATACGTCATCAAACAGTGACGTTACCCCTCGCAACGGCAATCAAGCGTCTCCTTCAGTCGACGAGCATCAGTACAGGACTAAACTAGAGCAAAACTCCAGAACTAAATTATTGTCacgctttaaaaacaaacagcgaTAATGCCTAAAATAAGCTCGGATACGTTATGGGACGTTGCTGAAGCGGAAGTGCGCAACAAAGAGAGCAGGACTGATGAAGAGGATGCTGAAGAGGACGCACACTTTCCCACACAGAGAACAGTCTTCTTCATGGGCAGTAAAGCAGGGGGTAAGACAACAATTTTGCTGCGGTTTCTTGATAGAGACGAAGCTGCTAAACCTACTCTCGCACTGGAGTACACTTTTGGTAGACGTGCTAGAGGGCATAACACGCCCAAAGACATCGCTCACCTGTGGGAACTGGGAGGAGGAATATCCTTATCAGACCTAGTGCAGATTCCCATCACTCCTGACAATGTCAGTTCGTTGTCCGTCGTACTTGTTCTGGATCTGTCTAAACCCAATGCTCTGTGGGAGACTATGGAGAGGCTGCTGGATTCAGCTCGAAATCAGGTGGAAAAAGTGTGTGTCTCGCTCCAGAAAACAGGAGAATCCCGATTGGGCAAACAAGGAGTCCCGCGAGTCCTCCCCAAAGACTATCCGGACAGAGAGCTCATCAGCCCTTTCCCTGTCCCCCTTCTCATAGTTGGAAGCAAGTTTGACATCTTTCAGGATTTTGATTCAGAGAAGAAAAAGGTGATTTGTAAGACTCTGCGCTTCGTGGCCCACTTCTACGGAGCCTCATTAATCTTCACCAGCAGCAAGTCAGAAGCCACGATGTCTAAAAGCAGGAGTTTTGTTAATCAGCTGGCGTTTAGGACCGAAAGACCAAAGTCAGTCTCTACTGACCCCAGCAAACCTCTTGCTATTCCGGCAGGCTTTGACTCCCTCAATCAGATCGGCTCACCTGTAACCTCTGATGTTGATATTGGGACTCTTCATGCCAAAAATCCCTTAGATCTTTGGAAAAAGGTTTTTGAAAGGGTTTTCCCACCTGAGaacaccAAGGAACGCAAGGAACTGAAAGATCCTGCCAAAGACCCTCAGTACAGCGAGCCCCATATAGACTCTATCAGAGCCCAGAAAGACCAGgaGCTGGAGCAGTATAAGAGAGAGCAGGCAAAGTCATGGAAGAGTTTGGCTCTGGATCCGTAGATTTCACTCAAAACCCTTCAGAATATTACATCTGTGTTTATGCATTGCACTGGACTTCATTCACTTTCCAGCATGTACCATAAAGGACGAAATGCTTTCATGTATAAAAATTGCAATGTAATGCGCAACGGCAGCATCAGtgtttaacacttttttttgtttagcgtATATCGCTTCTTTGTAGTTCaacacaatttgtatttttgtatatatgtaaatattgaattatatcAGCTGGACACTtcgaaattaaacaaaaacctgTTTTAA

Function

symbol description
dync2li1 Predicted to enable dynein heavy chain binding activity. Acts upstream of or within intraciliary transport. Located in non-motile cilium. Is expressed in several structures, including alar plate midbrain region; midbrain; pectoral fin; pectoral fin bud; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human DYNC2LI1 (dynein cytoplasmic 2 light intermediate chain 1).

NR:

description
cytoplasmic dynein 2 light intermediate chain 1 isoform X2

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0007275 multicellular organism development biological_process
GO:0005874 microtubule cellular_component
GO:0030286 dynein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003774 motor activity molecular_function

KEGG:

id description
K10417 DYNC2LI; dynein light intermediate chain 2, cytosolic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255440.1 True 1487 mRNA 0.45 13 6429382 6433028

Neighbor

gene id symbol gene type direction distance location
zbtb18 LOC107587843,LOC107666464,LOC107747541,LOC107585250,LOC107733762,LOC107698757 coding downstream 165387 6254597 ~ 6263995 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908 coding downstream 209626 6212541 ~ 6219756 (-)
sufu sufu,LOC107666454,LOC107667077 coding downstream 283351 6134613 ~ 6146031 (-)
trim8a trim8a,LOC107666453,LOC107747550,LOC107667064,LOC107733745,LOC108421648 coding downstream 295446 6115706 ~ 6133936 (-)
gabra2a si:dkey-52k1.6,gabra2,LOC107747556,LOC107666515,LOC107569424,LOC108262858 coding downstream 370238 6045262 ~ 6059144 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding upstream 449 6433477 ~ 6444448 (-)
prepl prepl coding upstream 120460 6553488 ~ 6560661 (-)
six2a six2a,six2,LOC107666385,LOC107711421,LOC107602488,LOC107602487,LOC107733704 coding upstream 287033 6720061 ~ 6722866 (-)
srbd1 LOC107711437,LOC107666540,LOC107585258,LOC107733719,LOC107698739 coding upstream 355804 6788832 ~ 6840561 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding upstream 428260 6861288 ~ 6863797 (-)
G91420 NA non-coding downstream 137179 6290881 ~ 6292203 (-)
G91406 NA non-coding downstream 221419 6206094 ~ 6207963 (-)
G91395 LOC107666411 non-coding downstream 245385 6183634 ~ 6183997 (-)
G91364 NA non-coding downstream 328199 6099268 ~ 6101183 (-)
LOC122356110 NA non-coding downstream 499891 5926993 ~ 5929491 (-)
G91454 NA non-coding upstream 13470 6446498 ~ 6448426 (-)
G91459 ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124 non-coding upstream 103573 6536601 ~ 6538368 (-)
G91490 NA non-coding upstream 254049 6687077 ~ 6687295 (-)
LOC122357105 NA non-coding upstream 260634 6693662 ~ 6703923 (-)
G91513 NA non-coding upstream 354239 6787267 ~ 6787607 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 32956 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 202110 6220175 ~ 6227272 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 356185 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 502705 5920502 ~ 5926677 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 1649650 4690882 ~ 4779732 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 20503 6453531 ~ 6499573 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1376821 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 1610537 8043565 ~ 8047901 (-)
G92267 NA other upstream 2682065 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 3741385 10174413 ~ 10191766 (-)

Expression


Co-expression Network