socs5b (socs5b,socs5,LOC107727375,LOC107586485,LOC107708402,LOC107699300)


Basic Information

Item Value
gene id socs5b
gene name socs5b,socs5,LOC107727375,LOC107586485,LOC107708402,LOC107699300
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4462022 ~ 4471950 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255442.1
TATTGATAAgcaatatacaaatacacaccgAGCTGTTAAAGGCAACAGATGGCTACTTTGTCTGATTGCCTATAATCATTAATCATTCATCCGGCGGCACTCATGCATTATCTCGGGTCTCCACGTTTTCAGGGTGGCAACCGAGGCAACGCGCTCTCGACCGGCCCTCCCATTGGTCGGCCACACGCTCGTCACTCCTCCATCCGTCGGAAGTGCGTTCTCCTCCTGCGTCTCCCTTACAGTCTGCGCCCGCCTGCGAGCTCGCGCTATCGGCCTCTTCCTCGCGCCTCCGCTCGGCTCGTCAAGCAGCAGCACGGGCTCGGCGCGTCGCAGGTCTGTCCTCGGATTATGCCGCCGTTCCAACCGACCAGAACGACGCGGGACTCGGCCGCTCTTTAAAAGCCAGCCTCAGAAAATGAGCGCTGCTGCCTTCTGTTCGCCAGGGCTGAGCGTGTGCGGGACAGCAGCGAGTCGGACAGCTTCGACAGCCTCCAAACAAAAGACGGCTGCGAAGTGATATTCGCGGTTAAAAAGGGTCATTGTCTCCATTCTATGGAGAAAGTGGGCAAGATGTGGGGTAACCTCAGGAGTCGATGCCAAGCTCTCTTCCACAACGATGGCTCAGAGTCCCATCTGTGTAGCCAGGAATTAGATTGCGTCCACTGTGTGGAGGACTTGGGCAGGGGAGCACATGCAGAACCCTATGAAACTAGATCTTCCACACCATCACGGACCTTGTCACCACTCCCACTGGTTTCTGGAGGACGCAGAGGACATAACTGTGTGGCAGATATACCCCAGATAGTAGAAATCTCTATTGACAAAGACAGTGAGGATGCACGGAGGGGTCCCCTTGTCCGTAGGGACTCTTACTCGCGTCATGCTCCCTTGGGAGGTAAAAAGAAGCATTCTTGCTCAACTAAAACACAAAGTTCTCTTGAGGCTGATAGGCGAACGGGACGCTCTAGAGGAAGTACAGCTAGGAGGGATCGTCGCTATGGAGTTAGCTCTATCCAGGAGATTAATGATTCTGTAGGAGCCGGCAGCAGTGGGCGGAGTCTTAGCACCCGTTCTCTACGACAGCGACTTCGGGACACCGTAGGCTTGTGCCTTCCTCTTCCCACACACCGCCGCTCTCAGTCAGCTAAAGGCCAGGTGTCCTCCAAACGTAAGATCCACCTTACTGAACTCATGCTTGAAACATGCCCTTTCCCACCTGGATCCGATTTGGCCAACAAGTGGCACCTAATTAAGCAACATACAGCACCAGTCAGCCCGCATTCCTCAACTGCTCTTTTGGATGCATTTGATTCGGCACATCCATCCCCTGAGGACGAGGAGGAGAGGCTGCGTGAACGGCGTAGACTTAGCATAGAGGAAGGAGTTGATCCCCCTCCGAATGCACAAATCCATACGCTGGAAGCAACTTCACAGAACTCCTCCCTCTATAAACTGGGACCAAAGATGGCCCCTGGTGTTGGGGAAGGACTTGGGGAAAGCAGAAGTCTGGGAACAGTCTCCTCTATTTCTGGGGGTTTATCAGGGATTGCCGCACAGGTTGCAGCTAGTATGGCAGTGCCATCCCACACTGTTGACTGTGACTCTGAAGAGGACTCAACTACTCTTTGCCTACAGACACGGAGGCCCAAGCAGAGGCATGCTTCTGGGGATGCTCACTGCTCCAGACAGCCGGGGCCTTGGAAAGTCCACACGCAGATTGACTATATTCATTGTTTGGTGCCTGACCTACAGGCCATTACTGCACTTCCTTGTTATTGGGGGGTGATGGACCGGTACCAAGCAGAAGCACTGCTGGATGGACGACCAGAGGGCACCTTCCTGCTACGTGATTCTGCACAGGAGGACTACTTGTTTTCTGTTAGCTTTCGGCGTTACAATCGTTCACTGCATGCACGCATTGAACAATGGAATCATAACTTCAGTTTCGATGCGCATGACCCCTGTGTCTTCCATTCTTCCACAGTAACAGGCCTGCTGGAGCACTATAAAGACCCCAGTGCCTGTATGTTCTTTGAGCCCCTGCTCACTGCTCCCTTACACCGGACTTTCCCTTTCAGCCTTCAGCACCTGGCACGAGCTGCCATCTGCAGACACACCACCTACGATGGCATTGGTGCCCTGCCACTGCCTCCAACCATGCAGGACTTCCTGAAGGAGTATCACTACAAACAGAAAGTCCGTGTGCGCTGGTTAGAGAGAGAGCCTCCACTCAAGGTCAAATGAGGTCTGGCTCTGCGCCCAAGAGAGGCAGGACTGTGGGCAAGAGTTTTGCCTCCAGAGGAGTATGTGGCTTATATTATCCATCATACAGCTGGCTTTAGATACACAGCAACAGAGGATGTTGAGAACTtccagcagttttttttccGGTTATTACTACACATGGAATCCATACATATGTTTCAGTGCAGTACATTCTGTCAAGCTAGTTTAACCGCTAAAGTGTCGAGCATGCTGGGAATGAGATGGTCTTATTCCCTCTGCTCTTTTCCCTATGACCTTAAATCCTCTGGATCTCCCCTAGCCTTCCCGCATGCCCTCTGCATTCTATCTTTTTAGCGTTTTAAACTATTTTGAGCAGTAAAACTGAGTGTTGCCACATTTACTAGCATCTTTTGTCAGGCAAATGGATCAACAGAAGATCCAGcgataaaatatattcaagtaaTCTTGGAAGTCTACATACCTGAATATCTGCTActcttaacaaaaaaaaaaaaaaaaaaaaaaaaatgtggtgtTAAATATCTAGTCACCTAAACTATATGCCTATTTGCTAAGTCACGGCTAATGTATCAGCAATACCTTCTACAGTGACCTCCTACAAGTGTCAAGTTCTCAGAGGCAGCACTTGTTAAGCCTTGTGTACATGGACAGGATCACAGTTATACACGCACCTCTCAGCACTaagcatgctttatttttaaaatcgaGGCAGACAGAAGTGAAAGGCATGAATTAATTGCGGGGAGGAGGGAGGACAGCGCACCATGTGCCATATGATAGAGAggacaaattatttaaaactaggCTCTCACGTAGTGTCATATCCCAGcataatctttgttttaaacaatctattttacaattttctatttttaccaGTGACAGTCTAAAATGGCATATGgcactttaaattgttgtttgtGTACCGCACAATGACTTATAGACTCAAGTACATGCATATAAAAagattgtagtttttttttgtttagtattttttaaaatatgtacctTATTCATTGGATGTCAATTTATCCCCCATATTCTCCGCATGAGTCACCCGAAGTTTGTGTTAGTGTCTCTTACCTTGCTTGTGCATATGGTATGTACTTAAACGGTTATATACGCAACAGCCGAAAGTGGACAGAGAAAGTCTTCTGTAAAATTTGTATAGATACCTCTAAGATCGGACTTTTCACTTTAGATATTGTTGAAAACCAGACAGATGCCATCACTgcgtatatatttaatgtttattggaTTGATTGATGGTATAACGTGTGATTGGTTCCACTTGATAATGTTGCACTTTTATTCATTATGAAGCATGCAGCTGTGCTTCTTTCATCATAATCGTGTGCACTAGGGATCGAGATTCCCTCAACACTGTAAAGATTTAGTTATAAAATTCTATACTTATGATGTGCTTggtcttacacacacacacacagaaaaaaagtcaacagAATCACGCTAATATGTTTTTTATCATATGTTCGGTATTGCAATAGACTTTCAAGGTCCAAGCAAATCTCAGACCATgcataataatatgtaaaaatggtACAATTTGCAGTATTTGGGTGTTTGATGATCAGCGACCAAAGGTGTGCATCTCTGTAGGTTGTTATTGTGAATGAGAAATCTTCCACCATgccttttgattatttttattgagcTCAATGACTTAATTATAGTGTCCAGTTTTCTGGCAGAGTAGCACCCATTTTGAAGCCATTTATTTGAACTGCAATTAAATCCGCAATTAACTCTTTTAAAATACACTTCGGTTGTCACTGAAAGGAAgtcattttgttaattttagaattttttttaataactctaTTTTTCCACTTGAATGGCCTGAATAAATACGCAAAATAACCatcttaaaatttcttccaccCTGCACACTGTATGCTCTGTATACAGGCACACATTATGTCAACTGTGTAGCGGTAAACGTCAGATGATGTCATCTGCTTTCACGACCTCAGCTTTGAGAATAATATGCCTTTCATtgaatttaaagacaaaatagGGGCACTTGGACACAGCAGGCAGTTTCACAACCTCTCCCCGatccacatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

symbol description
socs5b Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within several processes, including cell surface receptor signaling pathway; intracellular signal transduction; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS5 (suppressor of cytokine signaling 5).
socs5 Enables receptor tyrosine kinase binding activity. Involved in negative regulation of epidermal growth factor-activated receptor activity and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of phosphatidylinositol 3-kinase complex.

NR:

description
PREDICTED: suppressor of cytokine signaling 5

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04698 SOCS5; suppressor of cytokine signaling 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255442.1 True 4388 mRNA 0.45 2 4462022 4471950

Neighbor

gene id symbol gene type direction distance location
prop1 LOC107727379,LOC107699286,LOC107586498 coding downstream 15734 4441892 ~ 4446288 (-)
ttc7a ttc7a,LOC107586483,LOC107678602 coding downstream 24530 4404523 ~ 4437492 (-)
epcam epcam,LOC107707150,LOC107727388,LOC107699297 coding downstream 108271 4351284 ~ 4353751 (-)
thada thada,LOC107586496,LOC107590015,LOC107707143,LOC107727367,LOC107590014 coding downstream 136547 4245731 ~ 4325475 (-)
LOC122357001 LOC107699293,LOC107586477,LOC107727368,LOC107678540,LOC107707148 coding downstream 217589 4241527 ~ 4244433 (-)
galm galm,LOC107586487,LOC107699302 coding upstream 135274 4607224 ~ 4611108 (-)
hells hells,LOC107727385,LOC107586490,LOC107699304,LOC107708407,LOC107678596,LOC107589556 coding upstream 154438 4626388 ~ 4672250 (-)
gbf1 gbf1,LOC107708418 coding upstream 365828 4837778 ~ 4904092 (-)
ninl ninl,LOC107708420,LOC107589549,LOC107699311,LOC107727377,LOC107582480,LOC107678585 coding upstream 459469 4931419 ~ 4955793 (-)
sema4ga sema4ga,LOC107690158,LOC107582524,LOC107733683,LOC107678493,LOC107708465 coding upstream 536622 5008572 ~ 5040509 (-)
G90750 NA non-coding downstream 48251 4390355 ~ 4413771 (-)
LOC122356721 NA non-coding downstream 114498 4338842 ~ 4347524 (-)
G90633 LOC107590022,LOC107586473,LOC107758132,LOC107666233 non-coding downstream 448021 4010173 ~ 4014001 (-)
G90629 LOC107586470,LOC107698167 non-coding downstream 510425 3945108 ~ 3951597 (-)
G90632 NA non-coding downstream 517758 3943873 ~ 3944264 (-)
G90802 epas1,LOC107586486,LOC107727363,LOC107699276,LOC107589559,LOC107708405 non-coding upstream 73071 4545021 ~ 4570758 (-)
G90786 NA non-coding upstream 77161 4549111 ~ 4622804 (-)
G90785 NA non-coding upstream 88826 4560776 ~ 4584961 (-)
G90842 NA non-coding upstream 278482 4750432 ~ 4750968 (-)
G90846 NA non-coding upstream 357801 4829751 ~ 4833144 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 406609 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 506067 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 1026442 3422753 ~ 3435580 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other downstream 1163473 3281337 ~ 3298549 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other downstream 1217126 2990418 ~ 3244896 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 201016 4672966 ~ 4689168 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other upstream 218932 4690882 ~ 4779732 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 1448552 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 1589735 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1748225 6220175 ~ 6227272 (-)

Expression


Co-expression Network