pald1b (pald1b,LOC107588630,LOC107707320,LOC107668836,LOC107716354,LOC107673876)


Basic Information

Item Value
gene id pald1b
gene name pald1b,LOC107588630,LOC107707320,LOC107668836,LOC107716354,LOC107673876
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10969343 ~ 10981784 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255461.1
GTGAAAAGATGAGAATCCACCCACCGACATCCTCCTCTCCCATAACATTTATTGCGAGTGAAAGAGTCAGGAGGTGGCcattctctcctcctcttctcctccccCTGTGTTATCCATCTGCACTGCTGTCCGTCGAGCCTCGCTCTGCCGGACCGACACCTGACCGCGTGTCTTTGGACATGTGAGGGACAGTAACCGACGGGGATCAAGATGACTGTGACACGGACTCGGTCGTCTTCTATCTCTAATTGTTTCTCTCAATTCCTGACAGGTGTCTGAGGGAGCGGGCGGCCAGATGTACTGTATTTCTTCGTGGCCCCCAGAAGGGTTGGAACGGCTATCCTGTCACTGTGAGAAGAGAACCAGAGAGGCACTGAgcgagaaagagaagaaaagagattAACAAAACTTCGGTGGTGGCTGGATTTAAGACAAAAGGCTTTTATGCTAAGATTCTGCTAGTAACAGGAAACTGAGTTCGTGTTGACAGGATTTACACTTAAAGACAGACCTGAACCCTTGCTGAAACTAAGATGCAAAAACCAAAGGATGTGAGCACACGCGGCACAGCTGTGAGACCCTCTGTACAGATTATGGGTACGAGTGCCAGTGCAACTTCCCAGGCTGCTCCTTTTGCATCTACACACCAGGCTGATCACCAAGGGAACGGCATGGCTGAGCACAGACGCTCACTACAGTCAGTGAACATTCGCAATAGCAAGGCCAAATCCATCATCACAAACAAGGTGGCCCCTGTTGTCATCACAAACAACTGCAGGGAAGAGTTTCAGATTCATGACAAGATCCAATCTGCCAACTACTCAATGGGAAGAATATCTGACCTGTTGCCGGAGCACTACCTAGTGCTGGGGGAGTTTTTTATGGTACAGGATGTATACAACAGAGCTGATGTCTTAAATACTACAAAAAGCCACGGGGCCCCCAACTTCCGCCAGGTCAAGGGACACTACCCCCTTTTTGGAATGGGCCAACCTAGCCTGAGTGGTTTCAAACAGGTCCTCCAGAGACTGCAGATTGACGGCTGTGAGGAGGTGATTTTCGTCTGTTTGAGGGAGGAACCAGTGGTCTTCTTCCGCTCAGATGGAGACTTTATTCCATACACGCCCAGAGGAAGAGAGAACCTCCATGAGAACCTGCATGACCTAGACAGAGAGCTCAGCGCAGAGCAAATAGAGCTCTCCATCCGGAAAGAGTTGTGTGACTTTGCCAAGCTGAGTGAAAATATGTTCTATGTCTATAATGACATTGAGCATTTTAAAGATGAACCTCAGCATGTACAGATTCTGTCAGAGGAGGACATTCATGTCACTGAGGAGGTCTACAAAAGACCGCTTTTCAGTCAGCCTATGCACAGaTATTACAGATTGCCGCTTCCTATGGAAGGGGCACCACTGGAGGAGACATTTGATGCCTTTGTTAATATACTCAGGGAGACCCCAAACCTCTCTTTGATGCGAGACAGCTCCAGACCTCTGCCTGCACTGCTCTTCAGCTGCCAGGTGGGGGTGGGACGCACCAATCTGGGCCTTATTCTGGGAGCTTTAGTCTTCCATCACCTGCAGGGGGCATCAAAGAGCCCCAGACAAGAAGTACAGAAGAGTGAACACAAATTGGATTTCCAAGCGATTCAGCTGCTAATCAGTCGCTTACCTAAAGGTCAAGAAGTCCTTGATGAGGTTGATGATGCTGTTGCCATTTGCTCTGAGatgcataacataaaaaatgctgtgtatgaaaacaaactaaagcTCGAAGGCATTGGCGAAGACTACCAGATTCAAGGAAGCAGCACAAAAGGCTATTTCCTGCAAAGAACACTGCAAAGTCTTGAACGCTATGTGTACCTATTAGTATTCAATGCGTATCTTCATGATCAGTATCCACAGGCATTTCCCCAGAGTTTCAGTCAGTGGCTGTGTATGAACGCTTGGATCTACAGACTGCTGGCCAGCATGGATAGCTCTGAGCTCTCAGTGCCAACCAGTCTTATAACTGATGGGATTCGAGTTCTAGTGTCCAGTGAGTTTTTAGCAACGGATCTGCTCAGTACAGCCAAGGAGATGAAAGTAGCCAATTTCAGACGTGTTTCCAAAATGCCTCTATATGGCATGGCCCAGCCAAACTCTGAGGCTCTGGGTGTCGTGATGTCCTACCTGACAGACCAGAGGCGAGGGCACTCTACAATTCTCTGGCTGAATCTGCAGGAGGAGCTTGTGCTGGAGGCAAATGGACAAATGTTCACCCCAAGAGAGCCAGGCTGTCTGGAACAGCCTATTCCAGTCTGTGTTCAACATCCACAGCAGCTCCAGGAAATGGAGCTGGCACTGAAACAGGATGTCCTGAGGTGTGAGAAGTGGCTGGAGGTGATTACAGAGCAGGATAAACAGATGAGGATTTTTAAGAGTTGTCACACCATAGAGGAGCTCTTTGTCCATCAGAAAAGCATTCATCCAGGTCTCAGCTACCAGCGCATACCCCTGTCTGACTGCTGCGCGCCTAAAGAAGAGATTTTTGACCACTTATTGGAGGCCATGAAGAGCAGTCTGGCTGAAGACCCCAACTGTGCTTTCATCTTCAACTGTCATAATGGGAAGGACCGAACTACTGCAGCCATGGTCATCGCCACTCTCACCCTGTGGCACATTAATGGCTTTCCTGAGTGTGAAGAAGATGAGATTGTAAGTGTTCCAGACGCCAAGTACACTAAAGGAGAGTTTGAGGTGGTGATGCAGGTGGTAAGGGTGTTACCTGATGGCCATCGTGTGAAGAGAGAAGTGGATGTTGCTCTGGATGTTGTTAGTGAGACAATGACCCCCATGCATTACCATTTAAGGGAAATCATCATTTCCACTTACAGACAGATTAAGATGGCTAAATCCGAGGCTGACGCTCAGTGGTTACGGTTAAGGAGCCTGCAGTACCTCGAGCGTTACATTTATCTTATCCTGTTCAACTGCTACCTCCATCTGGAGAAGAAAGACTCCTGGAGGCGATCCTTCAGCCAGTGGATGTACCAGGTGGCAGCTAGAGCTGGTGTCTATGCCATCCTCAACCATCTGGGCTTTTCTGAGTTTGAGAACCCCGACGACTCTCCGATGGCCAGGCTCCGCTTCCGCTGGCTCCCACACAGTGTCCAGTCTATTCCCATGCGAGGGCAACTTATTTAGAAAGGCACAGTATGTCGAACTGACTAAATTCTGACTCACAtttcataaatatgtttttattacagctTCTGTCAGACTGTGTGATTTAATGCATCCTGttatcttatttacatttttgactcTATCTTTGGCTTGGCAGTGTTATGTTTCTCCCttgtaaaatataagaaaacaaacacagaagaaaGTTAACGTAATAATCCACACTTTAATGCTAATAAAGGATTTAATGCTGACCTTAAGATACATTTGCACGCTGTTATGAAAATGTCACCTCGTTtgtatataaaactaattaaataattgagATGTTAGTTAA
>XM_043255463.1
AAAAGATGAGAATCCACCCACCGACATCCTCCTCTCCCATAACATTTATTGCGAGTGAAAGAGTCAGGAGGTGGCcattctctcctcctcttctcctccccCTGTGTTATCCATCTGCACTGCTGTCCGTCGAGCCTCGCTCTGCCGGACCGACACCTGACCGCGTGTCTTTGGACATGTGAGGGACAGTAACCGACGGGGATCAAGATGACTGTGACACGGACTCGGTCGTCTTCTATCTCTAATTGTTTCTCTCAATTCCTGACAGGTGTCTGAGGGAGCGGGCGGCCAGCTCTGTACAGATTATGGGTACGAGTGCCAGTGCAACTTCCCAGGCTGCTCCTTTTGCATCTACACACCAGGCTGATCACCAAGGGAACGGCATGGCTGAGCACAGACGCTCACTACAGTCAGTGAACATTCGCAATAGCAAGGCCAAATCCATCATCACAAACAAGGTGGCCCCTGTTGTCATCACAAACAACTGCAGGGAAGAGTTTCAGATTCATGACAAGATCCAATCTGCCAACTACTCAATGGGAAGAATATCTGACCTGTTGCCGGAGCACTACCTAGTGCTGGGGGAGTTTTTTATGGTACAGGATGTATACAACAGAGCTGATGTCTTAAATACTACAAAAAGCCACGGGGCCCCCAACTTCCGCCAGGTCAAGGGACACTACCCCCTTTTTGGAATGGGCCAACCTAGCCTGAGTGGTTTCAAACAGGTCCTCCAGAGACTGCAGATTGACGGCTGTGAGGAGGTGATTTTCGTCTGTTTGAGGGAGGAACCAGTGGTCTTCTTCCGCTCAGATGGAGACTTTATTCCATACACGCCCAGAGGAAGAGAGAACCTCCATGAGAACCTGCATGACCTAGACAGAGAGCTCAGCGCAGAGCAAATAGAGCTCTCCATCCGGAAAGAGTTGTGTGACTTTGCCAAGCTGAGTGAAAATATGTTCTATGTCTATAATGACATTGAGCATTTTAAAGATGAACCTCAGCATGTACAGATTCTGTCAGAGGAGGACATTCATGTCACTGAGGAGGTCTACAAAAGACCGCTTTTCAGTCAGCCTATGCACAGaTATTACAGATTGCCGCTTCCTATGGAAGGGGCACCACTGGAGGAGACATTTGATGCCTTTGTTAATATACTCAGGGAGACCCCAAACCTCTCTTTGATGCGAGACAGCTCCAGACCTCTGCCTGCACTGCTCTTCAGCTGCCAGGTGGGGGTGGGACGCACCAATCTGGGCCTTATTCTGGGAGCTTTAGTCTTCCATCACCTGCAGGGGGCATCAAAGAGCCCCAGACAAGAAGTACAGAAGAGTGAACACAAATTGGATTTCCAAGCGATTCAGCTGCTAATCAGTCGCTTACCTAAAGGTCAAGAAGTCCTTGATGAGGTTGATGATGCTGTTGCCATTTGCTCTGAGatgcataacataaaaaatgctgtgtatgaaaacaaactaaagcTCGAAGGCATTGGCGAAGACTACCAGATTCAAGGAAGCAGCACAAAAGGCTATTTCCTGCAAAGAACACTGCAAAGTCTTGAACGCTATGTGTACCTATTAGTATTCAATGCGTATCTTCATGATCAGTATCCACAGGCATTTCCCCAGAGTTTCAGTCAGTGGCTGTGTATGAACGCTTGGATCTACAGACTGCTGGCCAGCATGGATAGCTCTGAGCTCTCAGTGCCAACCAGTCTTATAACTGATGGGATTCGAGTTCTAGTGTCCAGTGAGTTTTTAGCAACGGATCTGCTCAGTACAGCCAAGGAGATGAAAGTAGCCAATTTCAGACGTGTTTCCAAAATGCCTCTATATGGCATGGCCCAGCCAAACTCTGAGGCTCTGGGTGTCGTGATGTCCTACCTGACAGACCAGAGGCGAGGGCACTCTACAATTCTCTGGCTGAATCTGCAGGAGGAGCTTGTGCTGGAGGCAAATGGACAAATGTTCACCCCAAGAGAGCCAGGCTGTCTGGAACAGCCTATTCCAGTCTGTGTTCAACATCCACAGCAGCTCCAGGAAATGGAGCTGGCACTGAAACAGGATGTCCTGAGGTGTGAGAAGTGGCTGGAGGTGATTACAGAGCAGGATAAACAGATGAGGATTTTTAAGAGTTGTCACACCATAGAGGAGCTCTTTGTCCATCAGAAAAGCATTCATCCAGGTCTCAGCTACCAGCGCATACCCCTGTCTGACTGCTGCGCGCCTAAAGAAGAGATTTTTGACCACTTATTGGAGGCCATGAAGAGCAGTCTGGCTGAAGACCCCAACTGTGCTTTCATCTTCAACTGTCATAATGGGAAGGACCGAACTACTGCAGCCATGGTCATCGCCACTCTCACCCTGTGGCACATTAATGGCTTTCCTGAGTGTGAAGAAGATGAGATTGTAAGTGTTCCAGACGCCAAGTACACTAAAGGAGAGTTTGAGGTGGTGATGCAGGTGGTAAGGGTGTTACCTGATGGCCATCGTGTGAAGAGAGAAGTGGATGTTGCTCTGGATGTTGTTAGTGAGACAATGACCCCCATGCATTACCATTTAAGGGAAATCATCATTTCCACTTACAGACAGATTAAGATGGCTAAATCCGAGGCTGACGCTCAGTGGTTACGGTTAAGGAGCCTGCAGTACCTCGAGCGTTACATTTATCTTATCCTGTTCAACTGCTACCTCCATCTGGAGAAGAAAGACTCCTGGAGGCGATCCTTCAGCCAGTGGATGTACCAGGTGGCAGCTAGAGCTGGTGTCTATGCCATCCTCAACCATCTGGGCTTTTCTGAGTTTGAGAACCCCGACGACTCTCCGATGGCCAGGCTCCGCTTCCGCTGGCTCCCACACAGTGTCCAGTCTATTCCCATGCGAGGGCAACTTATTTAGAAAGGCACAGTATGTCGAACTGACTAAATTCTGACTCACAtttcataaatatgtttttattacagctTCTGTCAGACTGTGTGATTTAATGCATCCTGttatcttatttacatttttgactcTATCTTTGGCTTGGCAGTGTTATGTTTCTCCCttgtaaaatataagaaaacaaacacagaagaaaGTTAACGTAATAATCCACACTTTAATGCTAATAAAGGATTTAATGCTGACCTTAAGATACATTTGCACGCTGTTATGAAAATGTCACCTCGTTtgtatataaaactaattaaataattgagATGTTAGTTAA

Function

symbol description
pald1b Predicted to enable protein tyrosine phosphatase activity. Predicted to be active in cytoplasm. Orthologous to human PALD1 (phosphatase domain containing paladin 1).

NR:

description
PREDICTED: paladin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255461.1 True 3507 mRNA 0.47 21 10969343 10981784
XM_043255463.1 False 3219 mRNA 0.47 20 10969346 10981784

Neighbor

gene id symbol gene type direction distance location
spock2 spock2,LOC107668819,LOC107673954 coding upstream 18075 10924934 ~ 10951268 (+)
dnajb12a dnajb12a,LOC107716349,LOC107668821,LOC107707369,LOC107673930,LOC107585300,LOC107588700,LOC108443064 coding upstream 49672 10915644 ~ 10919671 (+)
cuedc2 cuedc2,LOC107585308,LOC107716345,LOC107673918,LOC107588639,LOC107707447 coding upstream 83833 10881919 ~ 10885510 (+)
pax2a pax2a,pax2,LOC101463634,LOC107707401,LOC107668824,LOC107588637,LOC107716343,LOC107585307 coding upstream 140983 10796082 ~ 10828360 (+)
chst3a chst3a,LOC107708342,LOC107588701,LOC107673894,LOC107683746,LOC107585362,LOC107716304 coding upstream 279905 10681748 ~ 10689438 (+)
qrfpra LOC107668764,LOC107673889,LOC107716286,LOC107564357,LOC107564360,LOC107588699 coding downstream 4301 10986085 ~ 10989734 (+)
rps24 rps24,LOC107673958 coding downstream 8778 10990562 ~ 10993312 (+)
zmiz1a zmiz1a,LOC107588626,LOC108443181 coding downstream 52163 11033947 ~ 11146626 (+)
ppifa ppifa,LOC107668776,LOC107588732,LOC107564349,LOC107673899,LOC108442288,LOC108263515 coding downstream 168212 11149996 ~ 11152447 (+)
LOC122356105 LOC107588620,LOC107707271 coding downstream 231715 11213499 ~ 11215087 (+)
G92731 NA non-coding upstream 7647 10959420 ~ 10961696 (+)
G92729 LOC107716350,LOC107673932,LOC107707381,LOC107588636,LOC107585302 non-coding upstream 21424 10820942 ~ 10947919 (+)
LOC122357062 NA non-coding upstream 205652 10753233 ~ 10763691 (+)
G92675 NA non-coding upstream 267240 10657508 ~ 10702103 (+)
G92671 slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 non-coding upstream 324106 10642556 ~ 10645237 (+)
G92746 NA non-coding downstream 1156 10982940 ~ 10983279 (+)
G92748 NA non-coding downstream 2454 10984238 ~ 10984645 (+)
LOC122356274 NA non-coding downstream 23126 11004910 ~ 11022056 (+)
G92767 NA non-coding downstream 220870 11202654 ~ 11203684 (+)
G92907 wdfy4,LOC107707224,LOC107757102,LOC107673934 non-coding downstream 386482 11368266 ~ 11368907 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other upstream 429 10964855 ~ 10968914 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 548917 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 719618 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 1534738 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 1805229 9161517 ~ 9164114 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 231742 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 273810 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 407601 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 589876 11571660 ~ 11592600 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other downstream 621913 11603697 ~ 11604852 (+)

Expression


Co-expression Network