tysnd1 (LOC107673878,LOC107716300,LOC107708039,LOC107578377)


Basic Information

Item Value
gene id tysnd1
gene name LOC107673878,LOC107716300,LOC107708039,LOC107578377
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10951451 ~ 10955143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255464.1
CTTTTACGCCAATGAAACCATACCAGGAAGTACTGCAGATGAATGTCGCGTGCAACAATATCAAGTCGGCGATAAgttaatatagtatttttaaattatctaGCTTGTCAGACGTATTCGTTGCAACTCTAACTATTAGTATTTGACAAGCTTTGTTTGCTAGCATGGTGTACTTTATAGTTTGACCTCCAGCGCCACGTTTGacattgtatattaaaattatcACAAGATGCAATaagtattactattattaccgTTACCTTAGAAAAACTGACAATTTTACTGAACCAACTTTATATTGTGatacataactatatatatatccaacatttgaaaatgaagaatGTGGAAGAAACATGTTGTGTTGTCACCGTGTCCGAGAAACGACTCGACCTCACACCTGGATCTCAAAATAAAGAAACGAGCTGTAGCGGAGTGTTTCTGAATTACCAGGCTGGGATTGTAGTCTGCAGTGGGATTTTGTTCTCACGCTTTATCAATGACAGACAGTCCACGAAGAAAGACGCGAAAGTACTGCATGCTGAAAGTTTCTCAGAAGAGATAAAAGTGCATGTAGATTACGTTCACCATTGCGCTAACCAATCGTGCGTAACGGACAGACGCGATACGAGCCGTCAAGAGGCTCGGCTGTTAATGATGATCAATTGTGTGGAGTTTCAGGATGCTTTTCGCAAGATCTTCAAAGGGGCTGATAACTGGGGCTTTTACAGTGGCACATTTGATACAGAAGTTCTAGAAGACTCCGTGTGTTTAAATTGGTTCGCGCTTTTAAAAGTGCCCACTTCATCCTTGTGCACCTGTAAGCAAACCGTTCCGTGGGTGAAGAGTGGCAGTCTTAAAAAGGGATGTCGTGTTATCGCGTGTGGGTCTCCATTCGGCGGTCTCTGTCCAGATCTCTTCATGAACACGGTTAGTAAAGGAATAGTTAGTAATCTGGCAGGAGATGAGAATGCCCTGATCCTGACCGATGCCCGCTGTTTGCCTGGCACCGAAGGAGGCGGTGTGTTTGTTGGCAGAGGAGGCAGATCTTACCTCGTGGGTTTGATCGTTTCACCGCTGTGCTGGAAATCGGACGAATGGATAGGGCTGACCCTCGTGTGCTCGGTTCACCTGATTCTGAAAAACATGCCACAGGCTGGTGCCATCCACAAGTCGCTGATAGAAAAGTCACCTCAGCTGATCACTGGCTCTCTTCAAGCTCCATTAACTGCAAACCGAAAGCCAGGCTCCGAGTTTTACCCTGGAGTGGTTCTGATCGAGAGTGGCCAGCTATGGGGTTCTGGTGTGCTGCTAAACCAGAATCTGGTTCTGACCTGCAGGCATGTGGTGAATGAAAAGTCTGTGCTTACAGTAAGAGTCAACTTTGGGGAAAGATTTCATGCAGTATGCGGTAAGGTGCTGTATTCATCAGCACAATCATCTCCCTATGATATCGCTGTGGTGGAGCTTCAGGAGCCCCTCGCAGACTcagtaaaaacacagtttacCACCTCCTTTCACCCGGGTGAGGATGTGCTTGTCGTGGGTTATGGAGCTTTAGGGAGCAGCTGTGGCCCTTCACTGACCTCAGGGATCTTATCCAGAGTTATTACTCATCATTCACAGCCTGTTATGCTGCAGACTACTTGTGCGGTGCAATCAGGAGCAAGTGGTGGTGCTGTGGTTCGCTCTGCCACTGGGGAATTGCTAGGTATCGTGTCCAGTAACACGAGAGACTTTGCAGCAAAAGTGACGTATCCCCACCTGAACTTCAGCATCCCGGTGACTGTTCTGGAGCCCCTGCTGAGACGTTTTGCTCAAACGAGAGACGCTGCTGTGTTTAAGCTCTTAGACAGTGCAGAGGACGATATCAGGAAGATATGGAGACTACAAAGCCTTCAGAGCAAGCTTTAATCAGTCGCCAAATTTTCAGCCTTTTAATTTGACTATTTAAGATTACACAAAATCCTGCTTAAATTTCTACAGTccttaaactgtttttatttttttttttcaacattatgaatggtcaaaacaaaacattgttctTTTCAACACTATGTATCATGTCATGAATCTACATTGCAACAATTTaggataaaatacatttttaagcataaCTAAATACAAccaatggaataaaaaaaaactgttttcagtcCTGGTTTCTAATTCGAACTTTAGATCGTTTGCTGCACTGTATCACTAATATATGAATGTGTTCCAACACTAAAACAATGCAGTGTTACAGCAGAGCTTCATCATACgcttttctgttaaaaaaaaaaagaaaccgaCGTTGAAAACCTAAAATGGATAGAAACCAAGACTGAAAACTGTATCCTAACTATTTCAGATTGATGCCAAGCAAGCTACACtggataatataatataatgctaaaatatgaaataacatGCCAATAATATATCAATGCAGTATTATAGTAGAgtataataacacatttttcctTCTTCATGTTAAATGTGGTGTAATTCTCTTAATGACAATATATTTGAAAGATGTGTTTACATCATGCCttctaataaaaagttaaaacatgTCTTCGTTTTTGAA

Function

NR:

description
peroxisomal leader peptide-processing protease

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K23012 TYSND1; peroxisomal leader peptide-processing protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255464.1 True 2575 mRNA 0.42 4 10951451 10955143

Neighbor

gene id symbol gene type direction distance location
trmt2b trmt2b coding downstream 36695 10913050 ~ 10914756 (-)
scdb LOC107716350,LOC107707381,LOC107673932,LOC107588636,LOC107585302 coding downstream 39622 10906055 ~ 10911829 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351,LOC107673931,LOC107585301 coding downstream 45537 10898368 ~ 10905914 (-)
hif1an LOC107707391,LOC107585304,LOC107588638,LOC107668772,LOC107673917 coding downstream 57499 10886804 ~ 10893952 (-)
cdhr1a LOC107588642,LOC107707459,LOC107683738,LOC107585311,LOC107673943,LOC107716342 coding downstream 249354 10669026 ~ 10702097 (-)
sar1ab sar1ab,LOC107668793,LOC107708324,LOC107564344,LOC107588735,LOC107673926 coding upstream 295 10955438 ~ 10958617 (-)
ppa1b LOC107716302,LOC107564343,LOC107673928,LOC107668792,LOC107708308,LOC107588733 coding upstream 4298 10959441 ~ 10964398 (-)
zcchc24 zcchc24,LOC107564348,LOC106577169 coding upstream 198448 11153591 ~ 11185986 (-)
wu:fj13e08 LOC107707292,LOC107668826,LOC107588624 coding upstream 231295 11186438 ~ 11192124 (-)
LOC122356818 NA coding upstream 237162 11192305 ~ 11195431 (-)
G92829 NA non-coding downstream 3720 10945204 ~ 10947731 (-)
LOC122356733 NA non-coding downstream 151587 10787586 ~ 10799864 (-)
LOC122356898 NA non-coding downstream 163947 10784852 ~ 10787504 (-)
G92788 NA non-coding downstream 166756 10784373 ~ 10784695 (-)
G92784 NA non-coding downstream 175952 10775195 ~ 10775499 (-)
G92836 LOC107668836 non-coding upstream 21390 10976533 ~ 10977459 (-)
G92839 LOC107668764,LOC107564357,LOC107716286,LOC107673889,LOC106577227,LOC107703098 non-coding upstream 31159 10986302 ~ 10986520 (-)
G92840 LOC107668764,LOC107716286,LOC107564357,LOC107564360,LOC107673889,LOC106577227 non-coding upstream 33271 10988414 ~ 10988695 (-)
G92841 rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360 non-coding upstream 34139 10989282 ~ 10993798 (-)
G92848 NA non-coding upstream 191035 11146178 ~ 11149252 (-)
G92819 NA other downstream 16120 10924944 ~ 10935331 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 316885 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 759685 10174413 ~ 10191766 (-)
G92267 NA other downstream 1835900 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2903550 8043565 ~ 8047901 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 245409 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 570260 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 688787 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 816285 11771428 ~ 11799032 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other upstream 1323311 12278454 ~ 12293594 (-)

Expression


Co-expression Network