sar1ab (sar1ab,LOC107668793,LOC107708324,LOC107564344,LOC107588735,LOC107673926)


Basic Information

Item Value
gene id sar1ab
gene name sar1ab,LOC107668793,LOC107708324,LOC107564344,LOC107588735,LOC107673926
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10955438 ~ 10958617 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255468.1
GTTTAGCAACCAGACGCCAACACGTTAACCTACAATCGATCTGAGACCACCCTATGCAGCTACGCAGTTCCGGTTAAACGTCAAATTTGGGCTGTTTTTTCAGCAGTGGAACACAGACCGGACTGACTGGTCTACAACAGAAGCGGACCCTTCCAGgGAACAGGCTACAAAATGTCTTTCATATTTGACTGGCTCTACAGAGGATTCAGCAGTGTGTTACAATTATTAGgACTCTATAAAAAGTCTGGGAAGTTAGTTTTTCTCGGATTGGACAATGCCGGGAAAACAACATTATTGCACATGCTTAAAGATGATCGACTTGGGCAACATGTTCCAACACTTCACCCTACGTCTGAAGAACTGACCATTGCTGGCATGACTTTCACAACATTTGACCTGGGTGGACATGCTCAAGCAAGAAGGGTTTGGAGGAATTATCTTCCAGCAATAAATGGGATAGTGTATCTTGTTGACTGTGCTGACCATGAACGTCTACAAGAAGCCAAAGTTGAGTTGGATGCCCTCTTAACTGATGAAACCATCTCCAATGTGCCAATCCTTATTTTGGGGAATAAAATCGACCGTCCAGAAGCAATTAGTGAGGATGCGCTGAGAGGAATGTTTGGTCTTTATGGACACACAACAGGAAAGGGGACTGTATCACTGAAAGATCTCAACCTGAGGCCAATGGAAGTCTTTATGTGCAGTGTGTTGAAGAGGCAAGGGTATGGTGAAGGTTTTCGATGGCTATCTCAATATATTGATTAACACATTTATGTGCTGATCAATTAAAAACCTGtgtattcttatttattaattgattatttatcTTGTAATGAAACTAGTAACCAGGGGTgttatatacactgtatatctGAAGCTATAAAATCCAGTGTGGTGATAGAGAATATCTGAGATATGCATTCATTAAAGCTACAGTAGCAATTACTTACATAAATCACGTTTACCTTAGCAGTAATTTATGCTATTTCCTTTTCTAAAAGCAGGGATAGAAATACAGTTTGCTTTAACAACTGAGTCGGGATATTTTAAGAAGTGGCATTAAGTTACagaatgctttctttttttcagttcagtgtCAGTTTTATACATGTGAAAGGCAAACATACCACTGAACGTTTAAATCTGGGATTTTAATCAGGTGAACATCAATTCTGGTGTGAAATCATCAGAAGATGgagaatcagtgtttttgttttcgtgTTACATTACCTCAGTGccttaatgttgttgttttttccacccgttcaaaggaaaaaaaaaaactctgaagtGATTCAGTGTGCTTTGCCAATGTATACATGCTTGCTTATTAAAATTGcctgatatttaaaatgaaatatttctatctaatatatataaaaagtacaaatatttgatttgtatgTAGTATTTTGATACTTTTACGATTGTGCTCATGTAGCACTCTGTGCCAGTGATGTCTACATCAGCCTGTTTCAACACTAAACTACCTGACTGTGTAATGAGTACTTGTTGACTGCCATCTGGAACTTACTCGCAGTTATGGCATGAGAGTACATaggctttttttaattcatagaAAATATACCTGTGCAATAGAAAAAGTGTCATATTAAtaggtttttactgtacataGGCTTACGTGAAAGTATTGGGATTTCCAGTGCTGCTTATCTTTTAAAATGGCTGATTATGTACCTGCCACGTGTAGCACTTTTATGCGCTGAagtaagcaaaataaaacaaatatgtatatattta

Function

symbol description
sar1ab Predicted to enable GTPase activity. Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; intracellular protein transport; and regulation of intracellular transport. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Orthologous to human SAR1A (secretion associated Ras related GTPase 1A).

NR:

description
PREDICTED: GTP-binding protein SAR1b-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255468.1 True 1764 mRNA 0.37 7 10955438 10958617

Neighbor

gene id symbol gene type direction distance location
tysnd1 LOC107673878,LOC107716300,LOC107708039,LOC107578377 coding downstream 295 10951451 ~ 10955143 (-)
trmt2b trmt2b coding downstream 40682 10913050 ~ 10914756 (-)
scdb LOC107716350,LOC107707381,LOC107673932,LOC107588636,LOC107585302 coding downstream 43609 10906055 ~ 10911829 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351,LOC107673931,LOC107585301 coding downstream 49524 10898368 ~ 10905914 (-)
hif1an LOC107707391,LOC107585304,LOC107588638,LOC107668772,LOC107673917 coding downstream 61486 10886804 ~ 10893952 (-)
ppa1b LOC107716302,LOC107564343,LOC107673928,LOC107668792,LOC107708308,LOC107588733 coding upstream 824 10959441 ~ 10964398 (-)
zcchc24 zcchc24,LOC107564348,LOC106577169 coding upstream 194974 11153591 ~ 11185986 (-)
wu:fj13e08 LOC107707292,LOC107668826,LOC107588624 coding upstream 227821 11186438 ~ 11192124 (-)
LOC122356818 NA coding upstream 233688 11192305 ~ 11195431 (-)
LOC122356100 si:dkey-275b16.2,LOC107588698,LOC107708014,LOC107757157,LOC107564350,LOC107668834 coding upstream 235869 11194486 ~ 11199080 (-)
G92829 NA non-coding downstream 7707 10945204 ~ 10947731 (-)
LOC122356733 NA non-coding downstream 155574 10787586 ~ 10799864 (-)
LOC122356898 NA non-coding downstream 167934 10784852 ~ 10787504 (-)
G92788 NA non-coding downstream 170743 10784373 ~ 10784695 (-)
G92784 NA non-coding downstream 179939 10775195 ~ 10775499 (-)
G92836 LOC107668836 non-coding upstream 17916 10976533 ~ 10977459 (-)
G92839 LOC107668764,LOC107564357,LOC107716286,LOC107673889,LOC106577227,LOC107703098 non-coding upstream 27685 10986302 ~ 10986520 (-)
G92840 LOC107668764,LOC107716286,LOC107564357,LOC107564360,LOC107673889,LOC106577227 non-coding upstream 29797 10988414 ~ 10988695 (-)
G92841 rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360 non-coding upstream 30665 10989282 ~ 10993798 (-)
G92848 NA non-coding upstream 187561 11146178 ~ 11149252 (-)
G92819 NA other downstream 20107 10924944 ~ 10935331 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 320872 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 763672 10174413 ~ 10191766 (-)
G92267 NA other downstream 1839887 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2907537 8043565 ~ 8047901 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 241935 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 566786 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 685313 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 812811 11771428 ~ 11799032 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other upstream 1319837 12278454 ~ 12293594 (-)

Expression


Co-expression Network