desi2 (desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908)


Basic Information

Item Value
gene id desi2
gene name desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6212541 ~ 6219756 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255489.1
GGTGTCCGTGTGTGGAGGCTGTTTTGCTCTATAAAAGCATTAGAGTGGCAGTAATGTACCGCTGTGAGGCTGGGCATCATCAGGCACGCgcattcagttcagttcacCGCACCACATCGTCAGACACACGAAACGGGGGAGGCTTCTCATATCTCGGGTGCTAAAACGTCTTCCTTCTATCCGACGTTCGTCTGCTTTCGTTTCCGTTCACTGTAAATATCACTTCGTCGTCTGAATGGCTGAGACTCCACGCaaattcttctctttctctcgcgCGCCGCTCATTTTTGTCTCCGCTGGTCATGAAGCTAAATGGCAGTTAGCCTAGCAGCGTCGCTACTCCCTGTAGCTGGACCAAAAAAAGTGGCCTAAAAATTCAGTCAATGAAAACCCCCTTCAGGACCAGCTCTTGGATGTCTCTAAACTGCTATAAACCAGCAGAGGTCAAGAGGACGCAGCAGAGGTGCTCACGAAGGGAAAGAAAATAAGTCCGTGTGCTGAGAAAGAGTGAAGAAAAACGGAGGagggcagcagcagcagcagctggtcGGCAGCtaaagtgaaagaaaaacaccaacatcCCTGTGATGGCAAACGAGCCGGTTATTCTGAACGTCTATGATATGTACTGGATCAATGAGTTCACTACCTCTCTGGGAATTGGAGTCTTTCACTCAGGAATTGAGATCTATGGCAGAGAGTTTGCCTATGGAGGACATCCTTATCCTTTTTCAGGTATATTTGAGATAACACCTGGTGACGCCACAGAACTGGGAGAGACATTCAAATTCAAAGAGGCCATTGTTTTAGGGAGCACAGACTTTACAGAAGAGGATGTGGAGAGAATTGTGGAGGAAATGGGGAAGGAATATAAGGGGAATGCCTACCACCTCATGCACAAGAACTGCAATCACTTTTCCTCAGCACTATCAGAGATCCTCTGTGGTCGAGAGATCCCACGCTGGGTGAACCGACTGGCCTACTTCAGCTCATGTGTGCCCTTCCTTCAGAGCTGCCTGCCAAAGGAGTGGTTGACGCCGGCCGCGCTGCAGTCCAGTGTTAGTCAGGAGCTCCAGGGAGAGCTGGAGGAGGCCGAGGATGCTGCAGCCTCGGCCTCGACGCCTTCCTGCGCCGTGGCACCCGCTCCCAGACCTACCCGACACCAACCACGCCGATGAACCCTGCTGCCTTGACTGGCAGGCCACCCTGCTTCGAGCTGGACCACAGCTTCTGCTGCCAATAGACCCCTCACCCCTTCTCCTGAGAGACTAGCAATTCACCAGCGGACTAGATGAAACCCACCGTCTGCATTCACTGATTTATTTCAGTATGCCCAAGTGGCCGTTACGACCTTGTTTACTGTAAAACCTTCTATGGGTTCGTCAGTGTTTTGACTTAATTACGTTTTGgccttttatgttttgttttaaaaactcaGGACTTGATTACAATGGCTTTGTTTAGTCACCGTTTCTTTGTTTTctatgttttaatgcttttctttacGCTGGAGTTGCGCACTAGCCTTTTCCTTCTTATTCCTACAGAAAGCGCCTAGTCGGTAaatacaaaacctttttttttttctgtctttctttttttttttaaggagaaCATTTGTTTACAGAATTCTTGCGTTCCAATCCGTGTATGATTGTGTTGTTGTGTGCGGGTTACAAAAGCCAAATCTCCACACTTTTGTAATGACACACATCCCACACTTTGGTGACTGTGCCTGAAGATTTTTATCATTACGTGCTCGGAGAGCTCTGCACTCTTTCTCTACAGATCTCTAGCTGTTCGGTCTGCTTTGAGTGGCAGGCTTCTTATCCTACGAGACCTTCCTCAGATGTTTTAcacctttttagtttttagagtCTTATATGTATTTGAGACAACATTTGTATTccattttatgattattaaagaaaattatacaa

Function

symbol description
desi2 Predicted to enable deubiquitinase activity. Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in cytoplasm. Is expressed in several structures, including margin; nervous system; neural plate; neural tube; and trunk. Orthologous to human DESI2 (desumoylating isopeptidase 2).

NR:

description
PREDICTED: desumoylating isopeptidase 2 isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K22763 DESI2, PPPDE1; deubiquitinase DESI2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255489.1 True 1940 mRNA 0.47 5 6212541 6219756

Neighbor

gene id symbol gene type direction distance location
sufu sufu,LOC107666454,LOC107667077 coding downstream 66510 6134613 ~ 6146031 (-)
trim8a trim8a,LOC107666453,LOC107747550,LOC107667064,LOC107733745,LOC108421648 coding downstream 78605 6115706 ~ 6133936 (-)
gabra2a si:dkey-52k1.6,gabra2,LOC107747556,LOC107666515,LOC107569424,LOC108262858 coding downstream 153397 6045262 ~ 6059144 (-)
gabrg1 si:dkey-155h10.3,gabrg1,LOC107747559,LOC107666522,LOC107667066,LOC107585224,LOC107569420,LOC107733747 coding downstream 172632 6029208 ~ 6039909 (-)
gabrb1 gabrb1,LOC107747557,LOC107666521,LOC107733746,LOC107585222,LOC107667065 coding downstream 203011 5987132 ~ 6009530 (-)
zbtb18 LOC107587843,LOC107666464,LOC107747541,LOC107585250,LOC107733762,LOC107698757 coding upstream 34841 6254597 ~ 6263995 (-)
dync2li1 dync2li1,LOC107666473,LOC107698753,LOC107585292,LOC107747586 coding upstream 209626 6429382 ~ 6433028 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding upstream 213721 6433477 ~ 6444448 (-)
prepl prepl coding upstream 333732 6553488 ~ 6560661 (-)
six2a six2a,six2,LOC107666385,LOC107711421,LOC107602488,LOC107602487,LOC107733704 coding upstream 500305 6720061 ~ 6722866 (-)
G91406 NA non-coding downstream 4578 6206094 ~ 6207963 (-)
G91395 LOC107666411 non-coding downstream 28544 6183634 ~ 6183997 (-)
G91364 NA non-coding downstream 111358 6099268 ~ 6101183 (-)
LOC122356110 NA non-coding downstream 283050 5926993 ~ 5929491 (-)
G91210 fgfr3,LOC107733743,LOC108263592 non-coding downstream 479863 5731256 ~ 5732678 (-)
G91420 NA non-coding upstream 71125 6290881 ~ 6292203 (-)
G91454 NA non-coding upstream 226742 6446498 ~ 6448426 (-)
G91459 ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124 non-coding upstream 316845 6536601 ~ 6538368 (-)
G91490 NA non-coding upstream 467321 6687077 ~ 6687295 (-)
LOC122357105 NA non-coding upstream 473906 6693662 ~ 6703923 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 139344 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 285864 5920502 ~ 5926677 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 1432809 4690882 ~ 4779732 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other downstream 1523373 4672966 ~ 4689168 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 2157128 4052743 ~ 4055413 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 419 6220175 ~ 6227272 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other upstream 138445 6358201 ~ 6396426 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 233775 6453531 ~ 6499573 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1590093 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 1823809 8043565 ~ 8047901 (-)

Expression


Co-expression Network