tm9sf3 (tm9sf3,LOC107711435,LOC107698740,LOC107666468,LOC102778527)


Basic Information

Item Value
gene id tm9sf3
gene name tm9sf3,LOC107711435,LOC107698740,LOC107666468,LOC102778527
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6849535 ~ 6860874 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255492.1
ACTCGTatgtgtgcatcttaagacaaccACTGTCATAGAACCAGGAAGAAGGAAGGTGGGATAGCCCCCCAAAAAAGATACCATCTCAAATCAGTCGCAGAATTTTCCCTAGAAAATCATGGGGCTCTGCAGGTGGACGATTGAAGTGGTTGTCCTGACGACTGTTTTTAGTTCATTGCTGCCAGTTCGAGCAGATGAACACGACCACAAGTACACAGATAAAGAGGAGGTGGTTCTATGGATGAATACAGTGGGCCCTTATCACAACCGACAGGAGACCTATAAGTACTTCTCCCTACCATTCTGCGTGGGCACCAAGAAAACTATTAGTCACTATCATGAGACGTTAGGAGAGGCGCTGCAGGGGGTTGAATTGGAGTTCAGCGGCCTGGACATCAAGTTCAAAGatGAGGTGATGCAGACAACATACTGTGACATTGAACTTGACAAACCTAAAAGAGATGCGTTTGTCTACGCTATCAAGAACCACTACTGGTACCAAATGTACATAGATGACCTTCCCATCTGGGGAATTGTTGGTGAAGCTGACGAGAATGGTGAGGACTATTATCTCTGGACGTACAAAAAGCTAGAGATCGGACACAATGGAAATAGAATTGTGGATGTTAACCTGACCAGCGAGGGGAAAGTCAAACTTGTGCCAAACACAAGAATTCCCATGTCATACTCAGTGAAGTGGAAGAAATCTGATGTGAAATTTGAGGATAGGTTTGACAAGTACCTTGATCCATCCTTCTTTCAACACAGAATTCACTGGTTCTCAATATTTAACTCTTTCATGATGGTGATTTTCCTGGTCGGTCTTGTTTCAATGATCTTGATGAGAACATTAAGAAAAGACTATGCCAGATACAGCAAAGAAGAGGAAATGGATGACATgGATCGTGATCTTGGTGATGAATACGGATGGAAGCAGGTTCACGGTGATGTGTTCAGGCCCTCCAGCCATCCGCTGATCTTCTCCTCCCTCATTGGCTCTGGCTGTCAGATCTTCTCCGTTTCCCTCATCGTAATCATTTTGGCCATGATTGAGGACTTGTATACAGAGAGAGGGTCCATGCTGAGTACAGCCATATTTGTTTATGCTGCCACGTCTCCAGTCAACGGGTACTTTGGTGGAAGTCTATATGCAAAACAAGGAGGGAGGAGATGGATAAAGCAGATGTTCATAGGAGCTTTTCTGATTCCTGCCATGGTGTGTGGCACAGCATTCTTCATCAACTTCATTGCTATCTACTACCATGCCTCCAGAGCCATCCCATTCGGCACCATGGTTGCAGTGTGCTGcatctgtttctttgtaattctaCCTCTGAACCTGGTGGGGACAATTCTGGGCAGGAACCTCTCCGGCCAGCCCAATTTTCCTTGTAGGGTCAATGCTGTACCCAGACCCATCCCAGAGAAGAAATGGTTTATGGAGCCAGCGGTTATTGTATGTCTAGGCGGCATCCTTCCATTCGGGTCGATATTCATTGAGATGTACTTCATCTTCACATCATTTTGGGCGTACAAGATTTACTATGTGTATGGGTTTATGATGCTGGTGCTGGTGATCCTGTGTATTGTTACAGTCTGCGTTACCATCGTCTGTACCTACTTTCTTCTCAACGCAGAAGACTACAGATGgcAGTGGACAAGCTTTCTCTCTGCAGCATCAACAGCAGTTTACGTTTACATGTACTCCTTCTACTACTATTTCTTCAAAACAAAGATGTATGGCTTATTTCAGACATCGTTCTATTTTGGCTACATGGCTGTGTTCAGTACTGCTCTGGGAATCATGTGTGGAGCCGTGGGTTACATGGGAACAAGTGCCTTTGTGAGGAAGATCTACACAAATGTGAAAATCGACTAGAAACTCTGCGGTGACGCTGCGGATCAGCCGACACTTCCTCCCGATCGAAGCGGGCACAAAGTCTCCATTTATTTTGCAAGAAGAGATTGTGGTATCTTGTACAAAATCTAGTTTTCCATTCTCAATGAATTAAAAGTTGCGGCATGAAGCATATACAAGGGTAAAATGAGAGGTGAAATAAACaggactttttattttattataatttttttttttttttttttttttttttaaatctgcttttcgttttttttccttccgGAGGAAATGCAGGCAGTAAAGGCAGATAAAAGGGGAAAGAAAGTACACCACAGCTTTGCTCCTATTTCTTATAACTCTATCCCACCTAAAAACCATTGAACAGATCTTTATTGATGGAATAGTCTAGCTCTCTTCAGTGAAGAGGCCAAAGTGTATGGAGAGCCTTTGTTCTATTATATGAGAATATTAGAGAGTGGGGTTTACGTCCATCCTCTTGCTTGTCTGTTTTGTATTACAGAGTCGTACAATGCCATTGTTATAGTATTGTTTTACATGCTTATGAATGACACCAAAAGCATAATGTGGTTTGAAATTCcaaaataccattttttttttcccattcataaataaatagataaaaccAACACGATGTGAAACAGCCAGGTTTTAGCTCTACCTTTTCAGGGCGTCTGTTTTCCTGTAGCTCAGATCTTCAGACCAGAGCAGGATAGAGCTTGGCACATCAGAGTTCGCTATCCGCAGCAGATTCTAGTGAGACTGATGATCTGAAATGATGGTTTGGTGGCAGATTGTTTTTAATGGGTTGTGTGATGTGATATTTCTTTTTCCAGTTCAGTCTTATGTTGTTGTTTGGGTTTGAATGAAGTCTGCTCGTAAAGATAATATATGGAGGGGGGTGGCCATGTATATAACCTTAATAATGTAACTGTAGATGTAGATCCCAAATGTATTTTGGTTGTACAGATTTATTAAAGggtgtcttttctttttttgttttgtttttggacagTCAGATTAAGGTTTttcattaggttttttttttttttttttgaaggttgGGGTGGGCTTGGTGGCACAGTTACATCTTGCCTGATATTGCATGAATTTTTCACCAAATCATACGATCAgattctatttgtttttttaagcatcattacACTTTAGGCGACCCCCACCGCTACCCTTGTTCATTAGCATCTTGTAGAACGGTCTCAAAAATAAGTGCTTCATTGACTTTGTGCTGCTCATAGAGGAGTTAGTcatcagctttttttattttatgttcgGTTTATTTAAAGAGTTGAAAGGCTATTCATTGTCTCGGACGGCCGTCTCTCGTACTTATTTTTGTATCCATGATCTGAACCAAAATTGTGAATGTCACACAATTTAGGCACACATGCTAAATCTTTGCAGACATACTGTACAAAGTGAAGTTATTGTACACTTTACTAGATGTTTTCATGGTGACTAAGTGGAGACACACTTAGACCAAGCTGttgttcttatttttcttatgttCCATTGTGTAAATACAGtatgtaactaaaaaaaaaaatgtttgagaagTGGCAAAGCCTTTTTCTAAACCTCATTCCTCccagtttaaaagaaaattgatTTCTGGTTCTTCATGTCATGTTCCATGTGAAGTCTAAAgagacattttaaacacaatattaaCTTGCtgtaaaaaggagaaaaaaaaataaacattgtttttgaGGTTA

Function

symbol description
tm9sf3 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF3 (transmembrane 9 superfamily member 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: transmembrane 9 superfamily member 3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17087 TM9SF3; transmembrane 9 superfamily member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255492.1 True 3612 mRNA 0.40 15 6849535 6860874

Neighbor

gene id symbol gene type direction distance location
LOC122356807 LOC107585259,LOC107733721,LOC107733720,LOC107585260,LOC107683040 coding upstream 1292 6844732 ~ 6848243 (+)
LOC122356727 LOC107585260,LOC107585259,LOC107733721,LOC107733720,LOC107698744 coding upstream 5995 6840597 ~ 6843540 (+)
six3a six3,six3a,LOC107733790,LOC107585256,LOC107711438,LOC107666567 coding upstream 142143 6704087 ~ 6707392 (+)
camkmt si:ch73-54n14.2,camkmt,LOC107602502,LOC107585255,LOC107733780,LOC107698723,LOC107666367 coding upstream 195302 6561232 ~ 6654233 (+)
slc3a1 slc3a1,LOC107747531,LOC107666489,LOC107698747,LOC107733775 coding upstream 296209 6545507 ~ 6553326 (+)
sfxn4 sfxn4,LOC107711434,LOC107733723 coding downstream 3272 6864146 ~ 6867334 (+)
eif3s10 eif3s10,eif3a,LOC107666466 coding downstream 12360 6873234 ~ 6885961 (+)
emx2 emx2,LOC107666392,LOC107711418,LOC107733718,LOC107585297 coding downstream 29639 6890513 ~ 6895703 (+)
atrnl1a atrnl1a,LOC107602489,LOC107666481,LOC107711425,LOC107733678,LOC107698718 coding downstream 247804 7108678 ~ 7293308 (+)
trnag-gcc_68 NA coding downstream 270552 7131426 ~ 7131496 (+)
LOC122356144 NA non-coding upstream 93981 6723280 ~ 6755554 (+)
G91492 NA non-coding upstream 150366 6693662 ~ 6699169 (+)
G91343 NA non-coding upstream 396459 6452744 ~ 6453076 (+)
G91324 NA non-coding upstream 479007 6370210 ~ 6370528 (+)
G91250 gabrb1,LOC106937613 non-coding upstream 847473 5998442 ~ 6002062 (+)
G91545 NA non-coding downstream 81693 6942567 ~ 6942795 (+)
G91594 NA non-coding downstream 186067 7046941 ~ 7047247 (+)
G91673 NA non-coding downstream 948997 7809871 ~ 7810104 (+)
G91681 NA non-coding downstream 962408 7823282 ~ 7825341 (+)
LOC122356873 NA non-coding downstream 1247467 8108341 ~ 8111278 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other upstream 491518 6254603 ~ 6358017 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other upstream 862556 5982518 ~ 5986979 (+)
lamtor3 lamtor3 other upstream 897018 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 1578288 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 1651131 5177718 ~ 5198404 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 232270 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 910686 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 975306 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 997824 7858698 ~ 7886690 (+)
G91833 slc37a1 other downstream 1445612 8306486 ~ 8310824 (+)

Expression


Co-expression Network