slc17a5 (slc17a5,LOC107588676,LOC107673875,LOC107585335,LOC107693696,LOC107718830)


Basic Information

Item Value
gene id slc17a5
gene name slc17a5,LOC107588676,LOC107673875,LOC107585335,LOC107693696,LOC107718830
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24851403 ~ 24856234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255515.1
AAGCAGGGGTTCCGCATTCGGAGTGTGTTGTTATTGTGCTTCTGGTCAGGCGGCCGGAGAGCAGCCGCTCAAGATGATGGAGAATTCAGCGTCAGACTCAGAAACTGAAGATCATGTCCAGCCTTTATTACGCCGGAAAGACACCGGAGACCTTCAGAAAGCTCCTGCTTGCTGCTCCTCACGATACGGGCTGGCCTTCTTGTCCTGTTATGGCTTCTTTGTGGCATATGCCCTCAGGGTGAACCTCAGTGTGGCAATGGTGGACATGCTGAAAAACAGTTCCGGTGCCAACAGCAGTTCCTCCGTCTGCCCCCATCACAGCATCCCTGTGCCCAAACACAATCACACTGCCAGTGTGTATGACTGGGATTCAGAGACTCAGGGATGGATCCTGGGCTCTTTTTTCTATGGGTATATTCTTACTCAGATACCGGGTGGCTACTTAGCACGCAAGTATGGTGCCAAGTGGCTTTTTGGTATCGGCATCCTTTGCACTGTGATCTTCACCCTGCTGACTCCAGTAGCTGCTGATCTGGGAGCCGGTTATCTCATCGCTGTCAGGGTGTTGGAAGGCATTGGGGAGGGGGTGTCCTATCCTGCTATGCATGCGATGTGGGCATCATGGGCACCTCCTCTGGAGAGAAGTCGACTGCTCACTGTCTCTTACACAGGTGCTCAGCTGGGAACTGTGGTGGCTCTTCCTCTGTCTGGCCAGATATGTTTTTACCTAGACTGGACGTACGTCTTTTATATATTTGGAGCTGTCGGACTTCTTTGGTTTTTCCTTTGGGCTTGCTTTGTCAGTAACAGTCCCAGCTCACACAAAAGGATATCGGAGGCTGAGAAGGCTTACATAATggcatctttaaaaaatgaaTTGTCCCCAACCACAGATTACATCCCTTGGACATCAATCCTCAAATCTATGCCATTATGGGCCATAGTTGTGGCACACTTCTCTTACAACTGGACATTTTACACTCTGCTGACTCTCTTACCCACCTACATGAATGATATACTTGGATTCAGCATCCAGCAGAATGGGATGCTCTCGGCTCTGCCCTATCTTGGTTGTTGGTTGTTGGCTTTGCTGGGCGGACAGCTGGCAGATCTCCTGAGAGAGAGATATCTTATCCGCACTGTAATTGTGCGTAAGGCATTCACTATAGTAGGAATGGTGGGACCTGCCGTCTTCCTGGTGGCTGCTGGCTACACTGGATGTAACTTTGTCTTGGCTGTAGCCTTCctctccatctcctcctctCTTGGGGGCATTTCAGCTTCTGGATTTAACATCAACCACTTAGACATTGCTCCATCATATGCCGGCATATTGCTTGGGATCACAAACTCGTTTGCTACTATACCTGGCATGGTGGGCCCTGTAATAGCAAGATCTCTGACCAAATCtAACACCATTCCAGAGTGGCAAATTGTCTTCTACATCTCCGCGGCAATCAATATATTTGGAGCTGTTTTCTTTACAATATTTGGCAAGGGCACAGTCCAGCCTTGGGCTGTCCAGAGAATACACATCCAATGAAAGACGTCCAAAAGGTCAAACGGCATACCTCTTAGCAGAGATCTTAGCAGTAGTTGCATATGGTTTGCAAACTAATGAATATTGCACAATctagtgttgttgttgttgttgttttttttatcataccAACAAACCGTGacttttggtatttttttatcagtaatgTCTGTATTACATTTCAGTTGCTTTTTCagacaatttaattttttttaaaacaaaggtGCGATAAGGGAAGATAAAACATGGATGTTGCCTCCTGTCATGTTGAGTTCTAATCACACTACCAGTGCAGTCCAGTATGCACTTGTGAGCCGACTCTGTTTAGTGAATGAAAAACCTGTGTGAATCAGCCAGAGCGATTACTGAATTAATCTGACTCACTTACAGAACCACGAATTAACTTGTGAACTGTTTAAAGTATGAAGTATAAAGCTCATGAGACCCATTGTAGCTGTTCTTAACACAGCACGTCTCATTTGTTAAATCTGattgaatcttaaaaatttaaatcatgaTCGTCAAGCGATTGGAGTATTTTGCAATGAACATCCCTATGAATTATGCCTTATTGTAGGCCTATGATTATCACAGCATGCCTTACTTATACAGAGGCAATAGGCCTTGGGAGATTATTGGTCAACTCATGTCAGATTGTTAAGCTGTACACCATAtgatttatgtttacattttatttctttctattttgtGCAGCTGTTACCACGTGCCACCAAATGAACCCGTGTCAATTACGTTGCATACTCTGTCAGTTGTCAAGATGCTACAATACATGCTCCATCACCTGTCAAATACTTGTGATCTAATAAAACGATTGCGCTCGTTTA
>XM_043255516.1
AAGCAGGGGTTCCGCATTCGGAGTGTGTTGTTATTGTGCTTCTGGTCAGGCGGCCGGAGAGCAGCCGCTCAAGATGATGGAGAATTCAGCGTCAGACTCAGAAACTGAAGATCATGTCCAGCCTTTATTACGCCGGAAAGACACCGGAGACCTTCAGAAAGCTCCTGCTTGCTGCTCCTCACGATACGGGCTGGCCTTCTTGTCCTGTTATGGCTTCTTTGTGGCATATGCCCTCAGGGTGAACCTCAGTGTGGCAATGGTGGACATGCTGAAAAACAGTTCCGGTGCCAACAGCAGTTCCTCCGTCTGCCCCCATCACAGCATCCCTGTGCCCAAACACAATCACACTGCCAGTGTGTATGACTGGGATTCAGAGACTCAGGGATGGATCCTGGGCTCTTTTTTCTATGGGTATATTCTTACTCAGATACCGGGTGGCTACTTAGCACGCAAGTATGGTGCCAAGTGGCTTTTTGGTATCGGCATCCTTTGCACTGTGATCTTCACCCTGCTGACTCCAGTAGCTGCTGATCTGGGAGCCGGTTATCTCATCGCTGTCAGGGTGTTGGAAGGCATTGGGGAGGGGGTGTCCTATCCTGCTATGCATGCGATGTGGGCATCATGGGCACCTCCTCTGGAGAGAAGTCGACTGCTCACTGTCTCTTACACAGGTGCTCAGCTGGGAACTGTGGTGGCTCTTCCTCTGTCTGGCCAGATATGTTTTTACCTAGACTGGACGTACGTCTTTTATATATTTGGAGCTGTCGGACTTCTTTGGTTTTTCCTTTGGGCTTGCTTTGTCAGTAACAGTCCCAGCTCACACAAAAGGATATCGGAGGCTGAGAAGGCTTACATAATggcatctttaaaaaatgaaTTGTCCCCAACCACAGATTACATCCCTTGGACATCAATCCTCAAATCTATGCCATTATGGGCCATAGTTGTGGCACACTTCTCTTACAACTGGACATTTTACACTCTGCTGACTCTCTTACCCACCTACATGAATGATATACTTGGATTCAGCATCCAGCAGAATGGGATGCTCTCGGCTCTGCCCTATCTTGGTTGTTGGTTGTTGGCTTTGCTGGGCGGACAGCTGGCAGATCTCCTGAGAGAGAGATATCTTATCCGCACTGTAATTGTGCGTAAGGCATTCACTATAGTAGGAATGGTGGGACCTGCCGTCTTCCTGGTGGCTGCTGGCTACACTGGATGTAACTTTGTCTTGGCTGTAGCCTTCctctccatctcctcctctCTTGGGGGCATTTCAGCTTCTGGATTTAACATCAACCACTTAGACATTGCTCCATCATATGCCGGCATATTGCTTGGGATCACAAACTCGTTTGCTACTATACCTGGCATGGTGGGCCCTGTAATAGCAAGATCTCTGACCAAATCtAACACCATTCCAGAGTGGCAAATTGTCTTCTACATCTCCGCGGCAATCAATATATTTGGAGCTGTTTTCTTTACAATATTTGGCAAGGGCACAGTCCAGCCTTGGGCTGTCCAGAGAATACACATCCAATGAAAGACGTCCAAAAGCTGTTACCACGTGCCACCAAATGAACCCGTGTCAATTACGTTGCATACTCTGTCAGTTGTCAAGATGCTACAATACATGCTCCATCACCTGTCAAATACTTGTGATCTAATAAAACGATTGCGCTCGTTTA

Function

symbol description
slc17a5 Predicted to enable sialic acid transmembrane transporter activity. Predicted to be involved in sialic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in lysosome. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; polster; and yolk syncytial layer. Human ortholog(s) of this gene implicated in sialuria. Orthologous to human SLC17A5 (solute carrier family 17 member 5).

NR:

description
sialin

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12301 SLC17A5; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255515.1 True 2385 mRNA 0.45 11 24851403 24856234
XM_043255516.1 False 1688 mRNA 0.49 12 24851403 24856234

Neighbor

gene id symbol gene type direction distance location
eef1a1a eef1a1a,LOC107693767,LOC107716315,LOC107588677,LOC107718831,LOC107673933,LOC108258313,LOC107585334 coding downstream 103 24846449 ~ 24851300 (-)
cgasa NA coding downstream 5768 24842270 ~ 24845635 (-)
asrgl1 asrgl1,LOC107695955,LOC107585330,LOC107673965,LOC105911569,LOC103032358,LOC108442615 coding downstream 179069 24667305 ~ 24672334 (-)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107673925,LOC107588666,LOC107585329,LOC107716319 coding downstream 230970 24603688 ~ 24620433 (-)
slc2a15a slc2a15a,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370,LOC107588743,LOC108442702 coding downstream 410070 24430020 ~ 24441333 (-)
rin2a LOC107585336,LOC107716314,LOC107588678,LOC107718829 coding upstream 985 24857219 ~ 24887322 (-)
si:dkey-187a12.4 si:dkey-187a12.4,LOC107718844,LOC107695884,LOC107588745,LOC107716288,LOC107673937,LOC107585337 coding upstream 31881 24888115 ~ 24890861 (-)
slc24a3 slc24a3,LOC107718828,LOC107693448,LOC107673935,LOC107716313 coding upstream 35719 24891953 ~ 24951267 (-)
soul2 LOC107695801,LOC107718843,LOC107588746,LOC107716303,LOC107585342,LOC107673856 coding upstream 108620 24964854 ~ 24966345 (-)
G96436 NA non-coding downstream 134441 24714219 ~ 24716962 (-)
G96435 rims1,LOC107588670,LOC107718836 non-coding downstream 137945 24710744 ~ 24713458 (-)
G96415 NA non-coding downstream 175457 24630553 ~ 24675946 (-)
LOC122357044 NA non-coding downstream 186478 24652927 ~ 24664925 (-)
G96411 NA non-coding downstream 245027 24606130 ~ 24606376 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other downstream 446688 24399123 ~ 24404715 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other downstream 506746 24342749 ~ 24344657 (-)
si:ch211-130h14.4 LOC107660236 other downstream 1407340 23429646 ~ 23444063 (-)
G96053 NA other downstream 1855804 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 2028144 22821981 ~ 22823259 (-)

Expression


Co-expression Network