nsmce4a (LOC107707575,LOC107588653,LOC107688307,LOC107716332,LOC107585317)


Basic Information

Item Value
gene id nsmce4a
gene name LOC107707575,LOC107588653,LOC107688307,LOC107716332,LOC107585317
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10349788 ~ 10354314 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255561.1
TCACAAGTTTTGTCATAGAATGCATCGGAAATGACGTGAGGCCAGTAAGCGCGTACTTCCGTCTACTCCCGCGAAGGTTTCACTGTTTATGCAAATGCAGATATGAATCCTGCGTTTTTTGAAGCTTaaaatcagGCAAGATTGAAGATGTCTGATTCGAGGAGACGGTCAAGAGGGAATCAAGAAGAGTCTGCAGGAACATCTAATGGTTTGGGTGGACGGAACAGGCCAGAGAGACCTGGCGATATGGTTGATGAAGATGATATTGGTGCGGGACCCTCAGGTATTGGCGAGGAAGAAGATGATCCAGCATGCAGGAGAGAGATCAGGAGCAAGTACCGGGACCTGATCAATCAAGTTCAGCaGAATCGTGAGGACATGCTAAACCCAGCTAACAATAAACTCACTGATGTTTTAGAAGAGGCCAACAAACTATTTGCCAATGTGAGGCAGGCTCGTGAAGCGGCTCTGGATGCTCAACTCTTGGTGCTAGCCACTGATCTAGGGAAGGAGAAGGCCAGTCAGCTACACGCTGAAGGCTCTGCGTTTGACCCGTCTGCATTTGCAGAACATTTGTTATCTTTCATGGGTCTGAATCGTTTGGAGGATGAAAGTGGTCAGGATGGGAACTTGGAGGGATATTTACCACAAGGCGCCTGGCAGAGGCTTGCAAAAAGATCCGAGTACTGCTTCAAAACAGCCCCTTCATTCCACTACATgTTGGGCTCATTTTTGGCAGAGCCGCCTCCTCCACGACAGAGAGTCGAAAGACAAAGGAAAGTCCCCAGCAAAGAGGCAAAGCGAATTATGCCCACGCAGCTGAAGAAAATGGAAGAATCTCACCAGGAGGCAACAGAGAAAGAAGTTGAAAGGATTCTGGGATTCCTGCGAAGTTACTTTGCTGATGACTCTGAGGAACCCATTTCATATTACGAGTTCGTCATTGACCCCAGCTCCTTCTCCCGGACCGTGGAAAACATCTTCCACATGTCTTTTCTCATAAGGGATGGTCTGGTGAGAATGTACTTGGACACGAATAAGCTTCCTTGTATAGCTCCAGTAGAGGAAGGTGAGAtagagcctggtggagctgccGTCCGACATCAGTGTGTCATCTCCATCAACCAGGAAAGCTGGAAGGAAATCATTGATGCCTTTGATATTAGGCAAGCTATGATCCCCCCTGCAGAAGTTATGTCGCAGTAAAGCTAAGTTGGAGGATAGCGACCGCTGCCAAAAAGCTTATCAGagcttatcaaataaaaacttttttatttttttaacatttgggATATCAATTTTAAGAGTTATGTCTTTTGAATTCTGTATGAAGTGTAATAATTGTGTgttatacaataaatgtaaagtgCACTTAACATTATATTAAGTCTTCcaaataactatattttaatttgatggaaACATTCAAGGTTCTTAACCCTTTACCGTCTGCTGTTCTCGTCTCCTATTTGGAAAAAAGTCTGAGTAGCAGGTCTCACTTCTCACATGACATCAATATATCACAGAACAGGTTTTGTTTGTGAACCATCATGTAATTGTACTACTTGCGAGTAAAATCTCTATTTGCACA

Function

NR:

description
PREDICTED: non-structural maintenance of chromosomes element 4 homolog A

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255561.1 True 1591 mRNA 0.44 11 10349788 10354314

Neighbor

gene id symbol gene type direction distance location
prom2 LOC107707565,LOC107588656,LOC107688306,LOC107585354 coding upstream 5809 10334675 ~ 10343979 (+)
ldb1a ldb1a,ldb1,LOC107707596,LOC107585322,LOC107673939,LOC108442788 coding upstream 16184 10313414 ~ 10333604 (+)
LOC122357143 NA coding upstream 20509 10329144 ~ 10329279 (+)
LOC122356189 inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 coding upstream 52074 10294206 ~ 10297714 (+)
fancl fancl,LOC107585345,LOC107718841 coding upstream 282616 10051087 ~ 10067172 (+)
LOC122357091 LOC107708061,LOC107688300,LOC107716282 coding downstream 2249 10356563 ~ 10385602 (+)
LOC122357093 LOC107688300,LOC107673862,LOC107588652 coding downstream 34771 10389085 ~ 10415236 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303,LOC107585316,LOC107673953 coding downstream 155200 10509514 ~ 10557882 (+)
myofl LOC107707528,LOC107588650,LOC107673938,LOC107688302,LOC107716336 coding downstream 206362 10560676 ~ 10583821 (+)
parga parg,LOC107716337,LOC107673942,LOC107585315,LOC107708050,LOC107683745 coding downstream 230067 10584381 ~ 10611491 (+)
G92563 NA non-coding upstream 40012 10309237 ~ 10309776 (+)
G92552 NA non-coding upstream 73610 10275584 ~ 10276178 (+)
G92524 NA non-coding upstream 184132 10164559 ~ 10165656 (+)
G92513 NA non-coding upstream 279005 10068488 ~ 10070783 (+)
LOC122356803 NA non-coding upstream 300346 10044781 ~ 10049442 (+)
G92671 slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 non-coding downstream 288242 10642556 ~ 10645237 (+)
G92675 NA non-coding downstream 303194 10657508 ~ 10702103 (+)
LOC122357062 NA non-coding downstream 398919 10753233 ~ 10763691 (+)
G92729 LOC107716350,LOC107673932,LOC107707381,LOC107588636,LOC107585302 non-coding downstream 466628 10820942 ~ 10947919 (+)
G92731 NA non-coding downstream 605106 10959420 ~ 10961696 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 100063 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 915183 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 1185674 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 1260667 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 1321879 9025943 ~ 9027909 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 61926 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 610541 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 859212 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 901280 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 1035071 11389385 ~ 11413515 (+)

Expression


Co-expression Network