sgpp1b (sgpp1,LOC107726595,LOC107602978,LOC107683631,LOC107553224)


Basic Information

Item Value
gene id sgpp1b
gene name sgpp1,LOC107726595,LOC107602978,LOC107683631,LOC107553224
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14563389 ~ 14576348 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255572.1
TACCCACTCTCGTGGTTGCGCGGATCTGTCAGTAACCGGATACGGCGTGGGGGTCGGTTTGTAAATCGTTGCAAGTAGTTTTTTGGGTTAATTTTCTCTGCGTATGTCCAGCAATAACATTAACCGTTGTTACAAGTCTATCTTGTCTCGTTTGGGTTGAGCGTTTTGCTATTATAAACACAGAAATGGAGGGAGTTGTTTAATAACGTACAGCACGGTTCATTCTCAGTAGCCCAAGCTTCTACCGGTCTTACCGGGCGGATTCAACTTGCGCAGTTTGTCGCTGGACATGGCAGGCGGGTTGAAAGCGGGATTCGTTCGTCTTATGCAATATTTGCAGGACCCTCAGCACGTCGCGCGCTTCCAACGGCTGTGCGGGGTGCGCGGAACCGAACCGCGTGACAGACTCCGTAACGGGGTGCCAAGCACTCGCCGCGGGGATGTTCACAACGGAGGCGGGGATGCCACCCGCCGTAGAACAGCAGGAGCAGAGAGCGCCAGGGAGAAACGCAATAACGGCGTGGCCAACGGGGCTGCGGGAGACAACGTCAACGGGCAGGCGCGGGATAAAGACGGGGTCGAGACTCAAGGATCCGCGGTGAAGCCGTTGCGCAGGAACTCTCTCACCGAAGACACCGGGCAGGAGTTCATCATCGACAATAAGTTTCTTTACTACCTGTTCACGCTTGGCACCGAGCTTGGGAACGAGCTGTTCTATATTTCATTCTTCCCGTTCTTCATGTGGAACGTGGACGCGTATGTGAGCCGCCGGTTAGTCGTGGTCTGGGTGTGGGTCATGTATCTCGGTCAGTGCACGAAAGATGTGATCCGTTGGCCGAGACCTGCCTCGCCTCCGGTGGTCAAGGTGGAGATGTTCTACAACTCGGAATACAGCATGCCGTCTACGCATGCCATGTCCGGTACCGCCATACCCTTGAGCCTGTTTCTGCTGACCTACGGTCGATGGGAGtatccTCTGCTGCTTGGTCTCTCTCTAGCCATCAGCTGGTGTGTCCTGGTGTGTTTGAGCCGTATATACATGGGCATGCACTCCATACTGGACATTATTGCCGGTTTTCTGTACAGTTTGCTGATCCTGGTGGTCTTCAGTCCTCTTCTGCACACCATCGACACATTTAACCGCACACATCCCTACGCCCCTCTCATGATCATCTCACTTCACGTAGGACTAGGCCTCTTCTCTTTTACCCTGGACACCTGGAGCACCTCACGCGGTGACACCGCCCAAATCCTGGGTTCTGGGGCAGGTATTGCCTTAGCATCCCACATCAACTACCATCTGGATCTTTTACCAGACCCACCTGCATCTACGTTTCCTATTCAACCCCCATCTTTCACCATCAGCCTGATCGCACTCTGTCTACTCCGCTTTCTCCTTGGTGTCCTCATTCTCCTGGCCACCAGAGCAGTAATGAAGGCTCTCACCATCCCCCTCGTCTGCTGGATCTTTGGGATTCCCAGCGGCGATGTTCGGAAGGCCAGGCAGCACATGGAGGTGGAGCTGCCGTATCGTTACATCGTCTACGGAACTGTGGGGTTAAATGCGCTTTTCCTCGTGCCTTTCCTGTTTGCACGTGTGGGCCTGTTGTGATTAGGTGGAAGAATTACCTATTATTTTAGCCAATGAGAGCCCAGTTGGACTGCAGAGGCAAATCAATGATTGGATGGAACTAAGGCCGATCGTGTAACACTGCTGCACCTTCCAGATGCTCCTTGAATGCATTTTCCATCATTTATACTGTAGTTTTATCAGATTTTCTATTCAAAACACCTGTTTGGTGTTAATCCAGAGATTATTGCCCTTTTCTATGCAGGTTGCTTTGCATGTATAGTACAGTAGCGTATCTATCAGATTCTATTCTTATCTAAAATCTTATTGTAAACTTTATACCCTACAGTGGttatgttgttgtgtttttttttttttgtttgtttgtttttttttttggaagcaaTACAGCATTTTTGCTAATTCAGAAATTTTATATGACATATGACTAATATTTTGGCAAGTTTTGTTCATGCCTTGCTTCAACTCTTGCATCAAGAGTCGATTGAAATCTCTCTTATAAAGTGTGACTCATGCAAATTAGCGTGAAAAATCTCTACGATGAAATGGTTGGGACCGATGCCAGcaatttctatttctttttgtttgtgaaaattGATTCTGAAATCTCAGATGTCAATAGAAACGGTCAGTGCTggatttttgtttagttttggaTAAGGTTGTTAAGGTCGGACTATTCTCCAAAGACTTTTGTAATGATAGAAGccttgaaatgaatgaatagttCATACAAAAGCCACAATTGTGTCATTTTACTCGCCCTCAATATTTTgggaaatgtcttttttgtgcATATCATAGAAGTCTAATATAGGGCTTTAATGTGATTTGATTCCCAACGGAAAAGGAAATCACAAGTTTGAAATAatatgagagtgagtaaatgatgagagttttctttcttttcttttctgtttgttgAACTGACCACTCAAATAGTTTTCTCAAGGCATTAAAATGTCTTGCTGATGCACTCGTGATTTACTTTGAATATTGTTTAATACTGGATCAGTAAAACTTTTTGTTCTTATGTTAAATACACGTCAGGGAGTCTGGCTCGTAATCAGAATTTTATTAGCTCTTTGATCTCAGTCTGCTTCTGTTCCCTGTACGCACGTTGCTGCTTagaatagtgtgtgtgtgtgtgtgtgaatatgcgCGGCGTTATTGATAGCAAAGAAAAGCAGCACTCGACCAATATGTGTTTTCTCTACTAGCATTTAGCAGTGTGCTTTTTGTTAGGTTGAAACACAAGGTTTGCCACTCAGCCTATAAATAATTCTGCTTTCTGATAGTCAAGGTTAAGTTCGATGTGTGGTTAAGATGAATTTGTGGTACTGATTTAAATGCACtgttcccagaatgcactgctcTGCTGCCTGCTGTTGTGCGTGTTGCTGTGATTTGGCCTTATAAAGGGTCAGGCTTCCACTCTTCCTGTGGCCTTGTGTGTCTTTGTGCACACGtaagttccttttttttgcttgaaagAGAAGCTGGCGTCCCAACTCCTCCCTTCTGTAAACAGAACTTGTTTTTAGATTCTCTAAATGATGAGAAAACCAGCTATTCTTCTCAGCGCAGACCAATGCTTACCTTTGACCCTTCACCTAAATCAGTAACATCTATGTAGTTTTAAGGTCAGAGGTTCTATGGAAGAGACAAAGGTCGGAGGTTAAATTTAGTACAGAACGAGTAGGAGATTATCTTTGGTGAGCATTGCTTTCTGGGTTTGTTCCTTACTTGATGATTCCATAAGAATTGTTTTGGATGGCAGTAGATTGTAACGTTTTGTTTTCTCAGGCCTGTATTTTAGTAATCagtcatgcgtttatgaccaaATATGAGTGTTTTCAGTAGTTGTAAGTCCATTATGTAATTTTCAGACCCATACTAAATCAGTAGGATTTTCATAAGTTTGGCTTGCATATCATTCAAAAAGCTCAAGACCACCTTtcttgtttatataattttttttgttcatattgtttaactatttaataacaaaaaacatgGTAGTCCCAGATTAATTTACCTTACTTTcccatgcatacatttaaaagcacCGAATGCAGGAAAAAAAGGCAGCAGAATCTGTGTGGTCCTTCTCGTGGCCTAGATTAAACTCCTGAGAAACGGGCTCAGTGGtgaagttttcattttaaagtgctttatttCCTTTGATTTGGTTTTCTCTAGTTTAACTGCAAATAACATGGCTTATTCTGAATAAACAGATCCGATTTGGATATCACACGGTGCCTTTTATCTAAATCTCGGCACTGTTTGAAAAGCACAGACAATTATTCCcatctgtttctttttaattctttctttcatccaagTAGAGCATTCGACAAACTTTAAACTGATGGATAGATGTCAGTGATGttaaatgaggaaaaatgtagtcataaaaaaaatacaatactaaaATAAGGGTTTGTCTGTGATCAGCTCTActtctgtttactgtttttcaaacaagaaaaaaaagatttcatgtTAAATGTCAGTTTTTCTCTCTTGGTGTTCACTTTGCTGTCATAACCATttcagaaatattacaaaagttGAACGTTTGTCTTATTTGAAAAGGCACCCTCCTATTGCTTTGGatgtttatttcagtgtaaaatcagtaggatttttttttaaatgtctggttgtttgttttgctacttgtttttacaattttcttcttctttttttttcaccaaaagTGTCCCAGAAGCTTTGaatattgtatgtgtgtttgtgtaaaatgttattttggagCTTTGATTCTCCTGTATGATATTAATCTTGGTCTTTTTGATTTCCTTTTTAATGATCTGTCAATATGGATGACTTTCCATCTCTTAATATTGTGGGAGGCACTCTTGAGTGTGAAGAGCTTGacgtaaatgtttttaaaaatgtaacaaaccGAACATTCAGACAAAAGTCTCCTGAGCGTCATCCAGCGTTCCCGGAAGAATCGCGCTCTCACAGGGCTAAAAACATAATGCACAAATGACCAAGAATTCAGTGTTATAAGGAGACCTCTGCCCTTATGTTAATGAAATGGCTTGTTATAAAAgctttgttaatttgtttttttcatagaaATTATCTAATGATCTTTATTGTTTCCTACATCACTATGTTTGAATATTCtgctcaataaaaataaaaaaggcta

Function

symbol description
sgpp1 Enables sphingosine-1-phosphate phosphatase activity. Involved in ER to Golgi ceramide transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane.

NR:

description
PREDICTED: sphingosine-1-phosphate phosphatase 1-like

GO: NA

KEGG:

id description
K04716 SGPP1; sphingosine-1-phosphate phosphatase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255572.1 True 4778 mRNA 0.42 3 14563389 14576348

Neighbor

gene id symbol gene type direction distance location
wdr89 wdr89,LOC107602933,LOC107683929,LOC107553226 coding downstream 1011 14557244 ~ 14562378 (-)
ppp2r5eb ppp2r5eb,ppp2r5e,LOC107736817,LOC107683621 coding downstream 7538 14536645 ~ 14555851 (-)
kcnh5b kcnh5b,kcnh5,LOC107736800,LOC107683602,LOC107654906,LOC105897728 coding downstream 38587 14490704 ~ 14524802 (-)
syne2b syne2,LOC107602924,LOC107683575,LOC107736849,LOC107553183 coding downstream 80350 14393659 ~ 14483039 (-)
trim9 trim9,LOC107553220,LOC107654940,LOC107683494 coding downstream 229577 14315230 ~ 14333812 (-)
syt16 syt16,LOC107726601,LOC107602979,LOC107683639,LOC107553223 coding upstream 559 14576907 ~ 14600263 (-)
snapc1b snapc1,LOC107726585,LOC107602935 coding upstream 25116 14601464 ~ 14606081 (-)
ifi27.1 NA coding upstream 31032 14607380 ~ 14608640 (-)
LOC122356918 NA coding upstream 33999 14610347 ~ 14613352 (-)
LOC122356917 NA coding upstream 37873 14614221 ~ 14615925 (-)
G93905 NA non-coding downstream 373485 14187539 ~ 14189904 (-)
G93879 NA non-coding downstream 633095 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 874763 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 897129 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 899478 13661750 ~ 13663911 (-)
G94003 NA non-coding upstream 296084 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 404648 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 703059 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 1028339 15604687 ~ 15605713 (-)
G94145 NA non-coding upstream 1063927 15640275 ~ 15640633 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 398975 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 480599 14079532 ~ 14082790 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 651552 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 658687 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 845075 13693026 ~ 13718314 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 448484 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 650984 15227332 ~ 15253357 (-)
G94128 NA other upstream 988269 15564617 ~ 15583917 (-)
G94147 NA other upstream 1065683 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 1109922 15686270 ~ 15720816 (-)

Expression


Co-expression Network