LOC122356643 (sec23ip,LOC107666414,LOC107655440,LOC107743502)


Basic Information

Item Value
gene id LOC122356643
gene name sec23ip,LOC107666414,LOC107655440,LOC107743502
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9482211 ~ 9491406 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255605.1
aaaaaagagctcaGCCTTTTCCGACTGGAGGACAAGCTACGTGtaatatttgattgaaaatggCTGATAGGAAAGCCAATAACATCCCCAGCAGCAGCGCAAATCTGCTGTTTTCAGCGGCTCCGGAGTTCAACTTCAGCCTGCCGTTCATACCTGTCAGTCAGGCCACCGGCCCCGCGGTTTTATCGGGAGATGATGCCAGTGAAGTTGGAGAAGAAGACAGTTTTCTTGGACAGACGTCATCAGCAGCTCCTCAAGCCTCCACGTTCAATTATTTTTCCAACACAACTAACAGCAGTGACCCGTTTGCATCTATAGGGCAGCAGCCTTGCCCGCCTCCAGCCGCCACCGTCATTCCATCAACAACGGGCCCATCGCCTGCATCCACTGCAGCGAGCCTGCCTCTAAACCCACCAATATCTCACATGAACCCCATTCAGCAGTACGGCAGTGTTACTAATCAAACCCCAATGAGTACATACACTCATCCACCTAATGCACcgactcctcctcctcctaccCAGAGCTCCCAGCAGTCCTATAACCCATACCGTCACACAGCTGCCAGTAGCAAAGCTAACCCATACCTCATGGCTCCTGAACTACAGCAGCAGCCCCCCAACCAAACACCCCAGCATCTAAACCCCTATACTCAGGCCACACCTGCTCCCTCGTTCCAGACTCCACCCACAGCGTTCTCCAAGcctccCCCAACACAGATTCCACCACCCCCTACAACAGCCAGCATGACCGGACCATTAGTCCCTGCCAACTCAATGGTGCCATATGCATATAATGTTTATGAACCTGTTCAACCTCACTGGTTCTACTGCAAACAAGTGGAGTCAAAGATGGTCTGGCTTCCCTTTAGTATTCTGGATTCCATTCACTTGGAAGAAACATTTAACTCTGTTCAGCCTGATCCAGAGAATGTGATAGTGTGCACGGACGGAGGGCGCTATGACGTGCAGCTGTATGACCGCACACGGACTGCCGTGTACTGGGAGGAAGAGCCCACTGAGGTCCGACGCTGTACCTGGTTCTACAAAGGAGACGCAGACAGCCGCTTCATCCCTTACTCAGAAGACTTCAGCGAGAAGTTGGAGGCAGAATACAAGAAAGCTGTTACCACTAATCAGTGGCACCGCCGACTGGAATTCCCTTCTGGTGAGACCATCGTAATGCACAATCCAAAGGTGATTGTGCAGTTTCAGCCATCTGCCATGCCTGATGAATGGGGCACGACACAGGACGGTCAGACCCGGCCTCGGGTTGTCAAGAGGGGTGTGGACGATGATCAGGACGAAGTTCCTGATGGTGAGATGCCTCAGGTGGATCATCTGGTGTTTATGGTGCATGGCATAGGCCCCGTCTGTGACCTGAGGTTTAGGAGCATGGTGGAGTGTGtgGATGACTTCCGCAGCGTGTCCTTGAAGTTGTTGCAGAGCCATTTCAAGAAGGCCCGTGATGATCATCTGATTAGTCGTGTGGAGTTTCTGCCTgtgcactggcacacagctcTGCATGGTGATGCTACAGGGGTTGACAGGAGGATAAAGAAGATTACTCTGCCCAGCACAGGTCGATTGCGTCACTTCACTAATGAAACCCTCTTAGATGTTCTCTTCTACAACAGCCCAACCTACTGCCAAACCATTATGGACACCGTGGCTTTTGAGATCAACCGCTTACATGCACTATTCATGCAAAGAAACCCAGACTTCAAAGGCAGGGTATCCGTTGCTGGACACAGCTTGGGCTCTTTGATACTTTTTGATCTGCTGTCCAATCAGAAGACAGGCTCACCTTCATCCAGTCCAGTGACCAATGGGAATGCTTTATCTAATGTGAAACAGGTAAGTCCTGTCATCCAGGCCAATGAAGTGCCTACTGTAGCAGCTGCTGAGGAAGAATctaaagaggaagaagaggagatTGGGAACCTGTCATCAGTTCTGGAGATGTTGGGGTTGTCTGAATATCTAAGCACTTTTGAAACCGAAAAGATTGACGTAGAGTCTCTGCTGATGTGCACAATAGAAGATCTGAAGGAAATGGGTATTCCTCTGGGGCCACGCAAAAAACTTGCCAATTTTGTCAAAGAGAAGTCTGCAAAACAGgCGGCCCGAAAGGCTGTGAAAGAGAAGACTGTAGAAAAAGAGGATCCGAAAGAGACCCAAGTTTCCGTTAGGACAGAGCCCACACCAGATTCTGCCGTTAGCAAACTGCCAGTGGGAAGGACCATGTCCTCAATTCATGTGgattacaattattttgaaattggcACAGGACAGGTGTCAGTGGTATATCATGCTCTTGTCTTTGAGCCGGTGAATTTCTTTGCTCTCGGTTCTCCCATCGGGATGTTTTTGACAGTACGTGGGGTGGAGAAAATCGAAGAGTCCTACCAGCTTCCCACCTGCAAAGGGTTCTTCAATATCTACCATCCACTGGATCCAGTTGCATACAGAATTGAACCCATGATCTTACCAGACATTGAGCTGGATCCAGTTTTGATCCCTCATCATAAAGGGAGAAAGAGGCTTCATCTCGAATTAAAAGAGAGTTTATCCAGGATGGGCTCTGACCTAAAGCAAGGTTTCATCAGCTCTCTGAAGACCGCTTGGCAGACTCTGAATGAGTTTGCCCGCGCTCACACCTCGTCCGCTCAACTGCATGAACAGCTCGCCATGGTCGCCAGTCAAATCAAAGCGGAAGAGGAAAAGCAGCAAGGGGAAGAGGAGAATAAGATGATCGAGAGTCCTGAACCCCAGAAAGAAGAGGAGACACAAGTAAAAGTGGGCATGCTGAATGGAGGGAATCGCATCGACTACGTCCTGCAAGAGAAACCCATCGAGAGCTTCAATGAATACCTGTTTGCACTCCAAAGTCATCTGTGTTACTGGGAATCTGAAGATACGGCTCTGCTTCTCCTCAAGGAAATTTACAAGACCATGAACATACACCCAGATCATTCGGTGCATTGATGTAACGGCTCATTGAAACTCCTCAGCTATCACaaattacattactttaaagataaaagaatattttaaagttttcaaTTCTTCACCTGGgactgtctttattttttattcttgtagTCTATATTAAAAGGAATACACTTGTATTATTTCATGTGtcttaaattaagaaattaaagtCAAATAGTGGATTTCAATACCACCACAACggtttaaaatgccatttttatagCTTAAATTATAGTTGCGAATGTTTGAATGCAGTTGCAAATGGAATCAAATGGTATTAACAACTTTTATCTATAGTTAGTGAAGAAATAACTATGCCGTGTAAAAACTACAACCAACAAATCATAATAAACTGAACTATTGTGAACTATTTTGAA

Function

symbol description
sec23ip Predicted to enable phospholipase activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human SEC23IP (SEC23 interacting protein).

NR:

description
PREDICTED: SEC23-interacting protein-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255605.1 True 3370 mRNA 0.47 18 9482211 9491406

Neighbor

gene id symbol gene type direction distance location
inpp5f inpp5f,LOC107726944,LOC107666413,LOC107743504 coding upstream 8677 9457557 ~ 9473534 (+)
bag3 LOC107726946,LOC107666417,LOC107655437,LOC107743505,LOC107601798 coding upstream 25303 9451180 ~ 9456908 (+)
pkd2l1 pkd2l1,LOC107666396,LOC107726939,LOC107743506,LOC107559329,LOC107655425,LOC107601815 coding upstream 38503 9436681 ~ 9443708 (+)
si:dkey-51a16.9 si:dkey-51a16.9,LOC107559326,LOC107655434,LOC107743509,LOC107601881,LOC107666536,LOC108426796 coding upstream 54074 9422476 ~ 9428137 (+)
LOC122356913 LOC107559323,LOC107743586,LOC107666393,LOC107601813,LOC107726938 coding upstream 61736 9418159 ~ 9420475 (+)
pcbd1 pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445 coding downstream 58327 9549733 ~ 9552495 (+)
neurog3 LOC107666354,LOC107726936,LOC107601803,LOC107655417 coding downstream 76211 9567617 ~ 9568527 (+)
bcl11aa bcl11aa,bcl11a,LOC107666449,LOC107601892,LOC107655449,LOC107559339,LOC107743494 coding downstream 123621 9615027 ~ 9667838 (+)
fancl fancl,LOC107585345,LOC107718841 coding downstream 559681 10051087 ~ 10067172 (+)
LOC122356189 inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 coding downstream 802800 10294206 ~ 10297714 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding upstream 2459 9479421 ~ 9479752 (+)
G92313 NA non-coding upstream 31522 9450446 ~ 9450689 (+)
G92147 NA non-coding upstream 206512 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 337700 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 384306 9050367 ~ 9097905 (+)
LOC122356835 NA non-coding downstream 79583 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 101013 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 232990 9724396 ~ 9727967 (+)
G92434 NA non-coding downstream 239319 9730725 ~ 9731002 (+)
LOC122356803 NA non-coding downstream 553375 10044781 ~ 10049442 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 47606 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 318097 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 393090 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 454302 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 742116 8739036 ~ 8740095 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 713707 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 924834 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1473449 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1722120 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 1764188 11255594 ~ 11262620 (+)

Expression


Co-expression Network