slc39a8 (slc39a8,LOC107666352,LOC107747545,LOC107733712,LOC107667057,LOC107585247,LOC107587916)


Basic Information

Item Value
gene id slc39a8
gene name slc39a8,LOC107666352,LOC107747545,LOC107733712,LOC107667057,LOC107585247,LOC107587916
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6174314 ~ 6179659 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255614.1
TGATAGCTGCTCGGTGAAGTCGTTCGCATCGAAGGAAAGTACCATGGAggaaagttttgtttacagtgtgtTGCGCTTCTACGGCGAAAGCGGGTCGCTGTCCACGGAAAACCTGGGAAACTTTCTGCGCCTCGTCGCCAGCCGCCGCGCGCCGTCGGTGGACGCCGCCTCCAACCCGCTGAAGAACACGGAGtGCTCTTCGTTGTCAGAGCTGCTGTCAGCCTTTGGACTCAGCAATGCTTCTGCTGTCAGTCTCAGTGATCTGGAGATGATGTGTCCAGCTATTCTCAATCAGGTCCTGCTCCCTGCCTGCCCCTTCACCTCCCCCTCAAACCAAAATGATTCTTCCCTGTTACCTGATCACAAAATTTGGGGTTATGGTTTCCTGGCCGTGACCGTGATAAACTTGGCTGCTCTGCTGGGGTTATTTCTGGTGCCTTTgactaaaaaaacatattttccaaAAGTCTTGACGTATTTCATCGCATTGGCCATTGGGACACTGTTTTCAAACGCTGTACTGCAACTTATTCCAGAGGCCCTTGGCTTGGATCCTAAAGATGATAACTATGTGCTAAATGTAGTCGGGATTTTTGGTGGATTTTACATTCTGTTCTTCACCGAACGGGTTTTAAAGATGGTACTGAAAGCGGACGCAGAGCTGGGACACAGTCATTTCCCTCCCCTGCAGTCAGCTGATGTCACCATCACCACCTTCAGCAACGACGCTGTCATAAACAACATCAGCGGTGACATCATCGCAAACAACACCAGTTGTGAAATGAACTCTATCAACGAAAAGCCCAGCCACCCAAGTGAGAGTCCAGCCGGCGATCAGAATGCATGCATGCTCTTAACATGTCGCTGGCTGAAAGGGAAGCGAATGTCTAATATAAAGACTGTGGCGTGGATGATCACGGTCAGTGACGCTGTGCATAACTTCATCGACGGTCTGGCCATCGGAGCGTCCTTCACGCTGTCTCTACTCACCGGCTTCAGCACCTCTATTGCCATCTTCTGTGAAGAGTTTCCTCACGAGCTGGgTGATTTTGTGATCCTGTTGAACTCGGGCATGAGTGTTGGTCAGGCTGCGTGTTTTAATTTGCTGTCAGCAATGTGCTGTTATCTCGGTCTTGCGTTGGGGATACTGCTGGGCAGTAGTTTTGCTCCGAATGCTATCTTTGCCATTGCTGGTGGGATGTTCCTCTATATCTCCCTTGCAGACATGTTCCCAGAGATGAACAGTATCATGGCTACACAAACCAAAGGTTATCGAGGAAAGCTTGCGTTCTTCCTGATCCAAAATGCTGGCCTGCTCACCGGATTCACTGTAATCTTGCTTATTACCCTGTTTGCTGGAGATATCAATCTAGGGTAAAAGGAAAGAAGCAAGAAACAAGGAACAATTGTTTTCAGTGCCAGAAACTAAAAACCTGAGACAGACTCTGCTGGCTTTTCTTTTTGTACAGTATGTCAGACTTGTACTGTATCTGCTGTTGGGAAAAACAACACAATCGTACGGCCCTGGAGTACatgatttggttttttttatagtttgatgAGATTTTGTTGTACTGATGTGAGTGTTGGTGTCTGATGTGAACAGGCAACAATACAGCGCTGTGTGAGGAGGGATTCCTCAGTGGCAGTGGCAGCCTAGCACTGAGTCTCTGAGCAGCTTTGTCATCCAAATGTCGATTTTTCTGAAGCACACTCGAGTGAGACTGTCGTGTTCACACGGTGTCTAACCAAAGGAAATGAAAGTAAAGATAATTGCTGTGTGCTTTTGTGCGTCTCTTCGACAGCCGGGTTTCATTAGGCCGGGGACGTTTTTGAATTTAAACCTTTCTTTCCTTTACATTAATTAAGAACAAGGTCTAGGATACAGAATGTTtaccaaatgtttgttttttttaaataattaaaaaacaaaagtgtgtgtgttacatgtacatgtatgtatgtgtataaaattatacaaatatatatgaattgaATTCAatatgtttctcctaaaatataacattaaacaaaaaagtttaccATTTTACAGAAAgtatgttttagatttttttttaaaataattgttctaTTAGAATAAGTAGAAGCAAATAAGCTCTCTATaaggttttgtattttatatttaatgcatttgtgtagGAACATGATATATTCAATTATGCCATAAGAAGTGCTATCATTTTTATTGAAGaagtaataaaatgtcatttaatgcCAATA
>XM_043255615.1
TGATAGCTGCTCGGTGAAGTCGTTCGCATCGAAGGAAAGTACCATGGAggaaagttttgtttacagtgtgtTGCGCTTCTACGGCGAAAGCGGGTCGCTGTCCACGGAAAACCTGGGAAACTTTCTGCGCCTCGTCGCCAGCCGCCGCGCGCCGTCGGTGGACGCCGCCTCCAACCCGCTGAAGAACACGGAGtGCTCTTCGTTGTCAGAGCTGCTGTCAGCCTTTGGACTCAGCAATGCTTCTGCTGTCAGTCTCAGTGATCTGGAGATGATGTGTCCAGCTATTCTCAATCAGGTCCTGCTCCCTGCCTGCCCCTTCACCTCCCCCTCAAACCAAAATGATTCTTCCCTGTTACCTGATCACAAAATTTGGGGTTATGGTTTCCTGGCCGTGACCGTGATAAACTTGGCTGCTCTGCTGGGGTTATTTCTGGTGCCTTTgactaaaaaaacatattttccaaAAGTCTTGACGTATTTCATCGCATTGGCCATTGGGACACTGTTTTCAAACGCTGTACTGCAACTTATTCCAGAGGCCCTTGGCTTGGATCCTAAAGATGATAACTATGTGCTAAATGTAGTCGGGATTTTTGGTGGATTTTACATTCTGTTCTTCACCGAACGGGTTTTAAAGATGGTACTGAAAGCGGACGCAGAGCTGGGACACAGTCATTTCCCTCCCCTGCAGTCAGCTGATGTCACCATCACCACCTTCAGCAACGACGCTGTCATAAACAACATCAGCGGTGACATCATCGCAAACAACACCAGTTGTGAAATGAACTCTATCAACGAAAAGCCCAGCCACCCAAGTGAGAGTCCAGCCGGCGATCAGAATGCATGCATGCTCTTAACATGTCGCTGGCTGAAAGGGAAGCGAATGTCTAATATAAAGACTGTGGCGTGGATGATCACGGTCAGTGACGCTGTGCATAACTTCATCGACGGTCTGGCCATCGGAGCGTCCTTCACGCTGTCTCTACTCACCGGCTTCAGCACCTCTATTGCCATCTTCTGTGAAGAGTTTCCTCACGAGCTGGTTCCCAGAGATGAACAGTATCATGGCTACACAAACCAAAGGTTATCGAGGAAAGCTTGCGTTCTTCCTGATCCAAAATGCTGGCCTGCTCACCGGATTCACTGTAATCTTGCTTATTACCCTGTTTGCTGGAGATATCAATCTAGGGTAAAAGGAAAGAAGCAAGAAACAAGGAACAATTGTTTTCAGTGCCAGAAACTAAAAACCTGAGACAGACTCTGCTGGCTTTTCTTTTTGTACAGTATGTCAGACTTGTACTGTATCTGCTGTTGGGAAAAACAACACAATCGTACGGCCCTGGAGTACatgatttggttttttttatagtttgatgAGATTTTGTTGTACTGATGTGAGTGTTGGTGTCTGATGTGAACAGGCAACAATACAGCGCTGTGTGAGGAGGGATTCCTCAGTGGCAGTGGCAGCCTAGCACTGAGTCTCTGAGCAGCTTTGTCATCCAAATGTCGATTTTTCTGAAGCACACTCGAGTGAGACTGTCGTGTTCACACGGTGTCTAACCAAAGGAAATGAAAGTAAAGATAATTGCTGTGTGCTTTTGTGCGTCTCTTCGACAGCCGGGTTTCATTAGGCCGGGGACGTTTTTGAATTTAAACCTTTCTTTCCTTTACATTAATTAAGAACAAGGTCTAGGATACAGAATGTTtaccaaatgtttgttttttttaaataattaaaaaacaaaagtgtgtgtgttacatgtacatgtatgtatgtgtataaaattatacaaatatatatgaattgaATTCAatatgtttctcctaaaatataacattaaacaaaaaagtttaccATTTTACAGAAAgtatgttttagatttttttttaaaataattgttctaTTAGAATAAGTAGAAGCAAATAAGCTCTCTATaaggttttgtattttatatttaatgcatttgtgtagGAACATGATATATTCAATTATGCCATAAGAAGTGCTATCATTTTTATTGAAGaagtaataaaatgtcatttaatgcCAATA
>XM_043255616.1
TGATAGCTGCTCGGTGAAGTCGTTCGCATCGAAGGAAAGTACCATGGAggaaagttttgtttacagtgtgtTGCGCTTCTACGGCGAAAGCGGGTCGCTGTCCACGGAAAACCTGGGAAACTTTCTGCGCCTCGTCGCCAGCCGCCGCGCGCCGTCGGTGGACGCCGCCTCCAACCCGCTGAAGAACACGGAGtGCTCTTCGTTGTCAGAGCTGCTGTCAGCCTTTGGACTCAGCAATGCTTCTGCTGTCAGTCTCAGTGATCTGGAGATGATGTGTCCAGCTATTCTCAATCAGGTCCTGCTCCCTGCCTGCCCCTTCACCTCCCCCTCAAACCAAAATGATTCTTCCCTGTTACCTGATCACAAAATTTGGGGTTATGGTTTCCTGGCCGTGACCGTGATAAACTTGGCTGCTCTGCTGGGGTTATTTCTGGTGCCTTTgactaaaaaaacatattttccaaAAGTCTTGACGTATTTCATCGCATTGGCCATTGGGACACTGTTTTCAAACGCTGTACTGCAACTTATTCCAGAGGCCCTTGGCTTGGATCCTAAAGATGATAACTATGTGCTAAATGTAGTCGGGATTTTTGGTGGATTTTACATTCTGTTCTTCACCGAACGGGTTTTAAAGATGGTACTGAAAGCGGACGCAGAGCTGGGACACAGTCATTTCCCTCCCCTGCAGTCAGCTGATGTCACCATCACCACCTTCAGCAACGACGCTGTCATAAACAACATCAGCGGTGACATCATCGCAAACAACACCAGTTGTGAAATGAACTCTATCAACGAAAAGCCCAGCCACCCAAGTGAGAGTCCAGCCGGCGATCAGAATGCATGCATGCTCTTAACATGTCGCTGGCTGAAAGGGAAGCGAATGTCTAATATAAAGACTGTGGCGTGGATGATCACGGTCAGTGACGCTGTGCATAACTTCATCGACGGTCTGGCCATCGGAGCGTCCTTCACGCTGTCTCTACTCACCGGCTTCAGCACCTCTATTGCCATCTTCTGTGAAGAGTTTCCTCACGAGCTGGgTGATTTTGTGATCCTGTTGAACTCGGGCATGAGTGTTGGTCAGGCTGCGTGTTTTAATTTGCTGTCAGCAATGTGCTGTTATCTCGGTCTTGCGTTGGGGATACTGCTGGGCAGTAGTTTTGCTCCGAATGCTATCTTTGCCATTGCTGGTGGGATGTTCCTCTATATCTCCCTTGCAGACATGGTATGAGGTCTTCCTATTGTGTTCCCAGAGATGAACAGTATCATGGCTACACAAACCAAAGGTTATCGAGGAAAGCTTGCGTTCTTCCTGATCCAAAATGCTGGCCTGCTCACCGGATTCACTGTAATCTTGCTTATTACCCTGTTTGCTG

Function

symbol description
slc39a8 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within manganese ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and spinal cord. Used to study idiopathic scoliosis. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIn. Orthologous to human SLC39A8 (solute carrier family 39 member 8).

NR:

description
zinc transporter ZIP8

GO: NA

KEGG:

id description
K14714 SLC39A8, ZIP8; solute carrier family 39 (zinc transporter), member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255614.1 True 2241 mRNA 0.43 8 6174314 6179659
XM_043255615.1 False 2056 mRNA 0.43 7 6174314 6179659
XM_043255616.1 False 1379 mRNA 0.50 8 6174314 6178776

Neighbor

gene id symbol gene type direction distance location
manba manba,LOC107747546,LOC107733670 coding upstream 600 6166502 ~ 6173714 (+)
ube2d3 ube2d3,ube2d2,UBE2D2,ube2d1,LOC107585246,LOC108263550,LOC106611705,LOC105029919,LOC105015883 coding upstream 8645 6160378 ~ 6165669 (+)
zmp:0000000662 zmp:0000000662,LOC107666523,LOC107747548,LOC107733769,LOC107667074,LOC107585245,LOC108421699,LOC108263473,LOC107569423 coding upstream 15001 6152743 ~ 6159313 (+)
arl3a arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158 coding upstream 66538 6104126 ~ 6107776 (+)
npm3 npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732 coding upstream 70328 6101631 ~ 6103986 (+)
nat8 LOC107666562,LOC107587914,LOC107747598,LOC107733716,LOC107667058,LOC107585290 coding downstream 995 6180654 ~ 6183028 (+)
dctn1b LOC107747544,LOC107587846,LOC107666474,LOC107667063,LOC107585248 coding downstream 4915 6184574 ~ 6210258 (+)
si:ch211-132e22.4 si:ch211-132e22.4 coding downstream 30737 6210396 ~ 6211899 (+)
adss2 adss,LOC107733748,LOC107666526,LOC107698758,LOC107585249,LOC101162945,LOC107747588 coding downstream 47881 6227540 ~ 6242532 (+)
cep170aa LOC107747537,LOC107666471,LOC107587839,LOC107733772 coding downstream 217083 6396742 ~ 6429387 (+)
G91250 gabrb1,LOC106937613 non-coding upstream 172252 5998442 ~ 6002062 (+)
G91172 NA non-coding upstream 217716 5954891 ~ 5956598 (+)
G91180 NA non-coding upstream 246181 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 247566 5926358 ~ 5926748 (+)
G91178 NA non-coding upstream 247989 5924540 ~ 5926325 (+)
G91324 NA non-coding downstream 190551 6370210 ~ 6370528 (+)
G91343 NA non-coding downstream 273085 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 514003 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 543621 6723280 ~ 6755554 (+)
G91529 NA non-coding downstream 635351 6815010 ~ 6861516 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other upstream 187335 5982518 ~ 5986979 (+)
lamtor3 lamtor3 other upstream 221797 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 903067 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 975910 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 1176323 4992153 ~ 4997991 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 74944 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 913485 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1591901 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1656521 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 1679039 7858698 ~ 7886690 (+)

Expression


Co-expression Network