rrp12 (rrp12,LOC103399548)


Basic Information

Item Value
gene id rrp12
gene name rrp12,LOC103399548
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11509238 ~ 11519335 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255617.1
CGCAAACCTAAGCGCGACACGCTGACTGGAGAGGCAAACGTGTCTGCTCAGCTGTAAGGATTTTCACCTGCTAAAATGGTGAAGTCCGGAAAACTCCGATCCGGAACAGCCCAGAAAATCAGGCGATGGAAGAAAGGTCACAGTAGTGACTCCAATCCGGAGACAAGTCGCTATCGAAAGGCAGCGAGAAGCAGATATTTCAGCCGTCCCTCTGaaaaaagtgaTCTGACAGTAGATGCCTTGAAACTCCACAATGAGCTTCAGGAAGGATCTCTGCAGAGAAGCAGTGATGCCATGGAAGCATGTGATTCCGTGGAGGATCAAGCTCTGACAGAGAAAACCTCTGGGACTTTTCTCAGTGGACTGTCGGACTGCTCCAATCTCACTTTCAGAAAAGTACAGCGCTACTGGGAGTCAAACTCTGCGGCACATAAAGAGATATGTGCTGTATTGGCGGCTGTAACCGAAGTGATTCGTTCTCAGGGAGGAAAGGAGACAGAGACGGAGTACTTTGCAGCCTTGATGACAACACTCGAAGCTGTTGATAGCAGTGAATCTCTGGCAGCTGTTGCCTACCTCCTAAACCTGGTTATGAAAAGGTTGCCTGTGGCAGTGCTTAAGAAGAAGTTTTCAGACACAGCCAAGGCTTTAATTGATATCATGTCAAACCAAGCCAATTCTGACTCGTTGTCCAGCATTCGATGGATCATATCCTGTCTATCGACTCTGCTGCGTAAACAGGATCTGTCAGTCTGGAGTTACCCTTCGACTCTACAGATGTACCATGGTCTTTTGAGCTACACAGTGCACTACAAACCCAagGTGAGAAAAGCAGCGCAGCTGGGTGTTTGCTCAGTCCTTCATTACAGCGACTTTATGTTCTCCGATAATGCCCCGGTCCATCACCCAGCAGCAGCCGCCACAGCCAAATTCTGCTGCAAAGAATTGGAGAAGTCAGGAGGAAGCAAAGAAGACACTACCACTCTGCACGTGCTTGGTCTTCTAAGAGACCTGCTGTCTGTTTTTCCTCTGAGCTCTGTAAAATCTTGCTGTGAGACCCTTCTCCGTGTGATGACCCTGAGCCATGTGCTGGTAACAGCAAAAGCCATGCAGGCTTTCCACAAGCTCTTCAGCAACAAGCCTAGTCCTGCCAGCATGTCTGCAGAACTGAATGCACAGATCATCACAGCTCTATATGACTTTGTTCCAAGTGAGAATGATCTGCAGCCTTTACTAGCATGGCTGTCTGTAATGGAAAAAGCCCACGTTCATCTGTCCAGTTTACAGAGCTCTCTGAGTATCGGTCATCTCCCTCGTCTCTTCTCTGTCACCATGTTGTGTCTTCTGTCCCCACATACACAAGTAGTCTCTGCTGCGGCTCAGACTCTGAAGACTCTGTTAAATGAGTGCGTGGCTCCTCATATGGCTGAGATCGGCTCTGTTTTACCAAACTCATCAACTGGAAATGGGGCTTGCATCCTAAAGATGTTTCAcaTCGTGGAGGAAGGATTGTCCTATCGTTTTCATGCCTCTTGGCCGTTTGTGCTGCAGATCCTGGGATGTTTCTACAAGGCTGCAGGAAAACAGGCTCATCCTGTTAtgacaaagAGTCTGCAGTCTCTCAGTGACCTGCGGACCACCCCTCAGTTCCCCTTCTCTGGAGAGCTGGATCTGGCTGTGGGCAGTGCGGTAGAGAGCATGGGTCCAGAGGTGGTCCTGAAAGCTGTGCCTCTCCTCATCACTGGAACGGATGATGACCTGGAGTTCCCACGTAGCTGGCTCATCCCAGTCATAAGAGATCATGTGAAAAACACTCAGTTAGCTTACTTCACCTCATACGTTTTCCCTCTGGCAATCAAACTTAAACAGACAGCTGATGACCTGGAGCAGTCAGGAGAGAAATTAATGGCTAAAGTCTATAATACTTTACAGATGCAGctttggaCCATGTTACCTGGGTTCTGCACTAAACCCGTTGATCTGTTGGTATCGTTTAAGGGCATTGCCCGGTCTCTGGGCATGGCCCTGAATGATCGCCCTGACCTCCATCTTTGCATCTGCCAGGCCTTGAGGACTCTTATCAACAAGAGCTGTGAAACGGTTGAGGAAAAGGCAGAATTGCAACGATTTTCCAAGAACTTTCTTCCCATCCTGTTTAATATCTACAGTCAGCAGCCGAAACCTGGAGAGTCGTTGACTGCTAGAATGGCTGTCCTGGACACAATCAGGGTCTACCTAAGCATTACGGAACAGGCGATGGTGTGCACATTTCTGCAAAAAGCATCGGAGAGACTCAGTGGTGCAGACAACTTCACACGACTTGCAGTTATCGACTTGATTGGGGCAATGGCTCCGATTGTAGATGAAGCATCTATGACCCAGATATTGAATTTGATTGAACCTTTTGTGGAGAGCAAGGATTCTAGCCTTCAGAAGAAAGCCTACCGTGTGCTGGAGGAAATTTGTGGAGGAGAGAGTGCGTCTTGTAAGTTTTTTGTTCAGCAGAATCTCGAAAAGCTGAAAACAATGCTGATGGACAGCCTGCCGACAGCAGCCTCAAGTTCCAAACGGCCTAGACTCAAGTGTCTGATTCATATAGTGAAGCGGCTGAGTGAAGAACATCGAGATTTTATTACAGCTCTGCTTCCTGAGGTCATCCTTTGCACTAAGGAAGTTTCTCTTAGTGCACGCAAAAATGCCTTCTCTCTTCTAGTTGAGATCGGAAATGCATTTGTGAGGTTTTGTGGGAACGTACAAGATGCCATAAATGAGTATTTAGGCCATGTGTACATTGGCCTAACTAGCTCTGTAACGATGATCACCTGTACAGTTCTGGCTTTAACAAGACTAGTGTTCCATTACAAAGATTCCATTGACGTCTCCTCACTGGAGCTGCTGCTGCAAAATGTGTGTCTGCTGCTTTCGTGCAGGACACGAGACGTTGTCAAAGCCTCTCTGGGTTTCCTAAAAGTCTTGCTCTTTTGTATGGATGTCAAGGTTTTAGCCAGCCGTATTACTGTAATTATGGAAGGCATCACCAATATGAATGATATGCGAAGACATTTTAGGGTGAAAATTAAGAACATTTACACCAAGTTGATTAGGAAATTTGGATTTGAGCTGGTCAAAAGCATGTTGCCGGCTGATCAGCACAAGGTTCTAGCGAACATCCGTAAAACAGAGGCCAAGAATAAGAGACACAAACTCATGATCAAGACAGAAGAGGACGGATCAGACACTGAGGATGAGAAACCTAAAGTGAAAGAAGAGAGTATTGAGGACATTCTGGCTGACTCGGACTCTGATTTGGATGAAGATGAGAAACCTAAAAAGGGTCAGAAGAAGCCAATGAAAAAGGACCAGGCCTGGTTAAAGGAAGGTGAATCTGATGAACCACTCAACTTCCTTGATCCGAAAGCAGCACAGAGAGTTTTGGCAACCAACCCAAATCTGAAGAAGACCATCAAAACAGAGCATGGGTTCAAGATGACATCCGATGGAAGGCTGATCATcaaagaggaggaggatgacGATGACTATAAAACAAAAGATGCTGAAATGGATGATGTGCTTGAAGAGGCTGGGGTCAAAACTAAGAAGAATCCAAAGAGGAAAATGCACGACGATctagatgatgatgatatggATGTCAAACCTACAATGTCATACAAAGCTGGTGGCATCGGAATCCACAGACCTCTGGATAGAAGACCAGAGTTTGGGACGGACTATAAATCTAAGAAGGGAAAAGGCGATGTTAAGAAAGCGGGCAAATGTGACCCATATGCGTATGTACCATTGAAGAAATCCCAGCTCAACCGCAGGAAAAAAGCCAAACTTCAAGGGCAGTTCAAAGGCATGGTCAGAGGGGCCAAGAAAGGAGCACACTCTGGATCGAGGATACTGAAGAAGAGGAAAGCATAATGTTTCTTCTTGTTACGGTCTTTCTAGATCTGCCCTTGCTTCCCATGGTGTgtgatcaaaataaagttaGGGGCTTCTTGTTTTCCTGTAAAAATGCTTGGAGAACTTCTTGTGGAAGTGTCTCCTCGAAAGATGATTTCAAGAGGTCCTAGTTAGTGTGTTCTGTGATTTGGGTTTAGGAACATAGCAGTATGACAATAGCTTTGTGCCGAATGTATTTATGGACTTGCtatgtttgaaagaaaataaactctTCACAAAACCCCA

Function

symbol description
rrp12 Predicted to be involved in rRNA processing. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; intestinal bulb primordium; musculature system; and nervous system. Orthologous to human RRP12 (ribosomal RNA processing 12 homolog).

NR:

description
RRP12-like protein

GO: NA

KEGG:

id description
K14794 RRP12; ribosomal RNA-processing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255617.1 True 4191 mRNA 0.46 34 11509238 11519335

Neighbor

gene id symbol gene type direction distance location
prdm8 prdm8,LOC107708270,LOC107668783,LOC107588729,LOC107673884,LOC107548615,LOC107757101 coding downstream 23004 11482519 ~ 11486234 (-)
mapk8a mapk8a,LOC108443371,LOC107707207,LOC107588610,LOC107673914,LOC102796928 coding downstream 84060 11414223 ~ 11425178 (-)
wdfy4 wdfy4,LOC107707224,LOC107668800,LOC107757102,LOC107673934 coding downstream 126927 11341254 ~ 11382311 (-)
LOC122356689 LOC107668812,LOC107588612,LOC107707231,LOC107757103,LOC107548607 coding downstream 184534 11312167 ~ 11324704 (-)
tmem72 tmem72,LOC107707262,LOC107757114,LOC107564361,LOC107673868,LOC107668804,LOC107588619 coding downstream 285422 11219603 ~ 11223816 (-)
ubtd1a ubtd1a,ubtd1,LOC107708242,LOC107673956,LOC103038242,LOC107548628 coding upstream 751 11520086 ~ 11525260 (-)
pgam1a pgam1,pgam1a,LOC107668811,LOC107548630,LOC107707176,LOC107673951,LOC107700858,LOC103038634 coding upstream 14115 11533450 ~ 11540103 (-)
rtn1a rtn1a,LOC107668786,LOC107707153,LOC107588606,LOC107757140,LOC107548601,LOC107673903 coding upstream 38024 11557359 ~ 11577350 (-)
dhrs7 dhrs7,LOC107588602,LOC107548599,LOC107588604 coding upstream 83285 11602620 ~ 11606263 (-)
six4a LOC107668780,LOC107708200,LOC107588724,LOC107757135,LOC107675560,LOC107548598 coding upstream 135055 11654390 ~ 11661586 (-)
G92935 NA non-coding downstream 95985 11412183 ~ 11413253 (-)
G92934 arhgap22,LOC107588697,LOC107668831,LOC107708000,LOC107673870,LOC107548604 non-coding downstream 97799 11410630 ~ 11411439 (-)
G92842 NA non-coding downstream 246601 11257080 ~ 11262637 (-)
G92848 NA non-coding downstream 359986 11146178 ~ 11149252 (-)
G92841 rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360 non-coding downstream 515440 10989282 ~ 10993798 (-)
G93062 NA non-coding upstream 105463 11624798 ~ 11625140 (-)
G93063 NA non-coding upstream 110105 11629440 ~ 11629749 (-)
G93099 NA non-coding upstream 218682 11738017 ~ 11738231 (-)
G93111 NA non-coding upstream 282680 11802015 ~ 11802286 (-)
LOC122356216 NA non-coding upstream 385433 11904768 ~ 11938181 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other downstream 290253 11200552 ~ 11218985 (-)
G92819 NA other downstream 573907 10924944 ~ 10935331 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 874672 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 1317472 10174413 ~ 10191766 (-)
G92267 NA other downstream 2393687 9115093 ~ 9115551 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 6068 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 124595 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 252093 11771428 ~ 11799032 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other upstream 759119 12278454 ~ 12293594 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other upstream 909862 12429197 ~ 12430778 (-)

Expression


Co-expression Network