tomm20a (tomm20a,LOC107690811,LOC107728308,LOC107667141,LOC108247505)


Basic Information

Item Value
gene id tomm20a
gene name tomm20a,LOC107690811,LOC107728308,LOC107667141,LOC108247505
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20142549 ~ 20145468 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255630.1
AGAGCTTTCGTCATCAGAGGGGTCCTTCCACCGCTCCGTGAGCACGTGCCCTGCAGAAGCGGCAGATCTCCGTTAACGGCGCCGCGATGATGGGCGGCAAACCGAGCGCGATCGCCGCGGGCGTCTGCGGCGCGATCTTCATCGGGTACTGCATCTACTTCGACAGAAAACGACGCAGTGACCCGACCTTCAAAAGCAGACTGCGCGAACgGAGGAAGAAGCAGAGAGCGTCTCAAAATAAATCCGGACTCGCCGAATTGCCAGATCTTAAAGACGCCGCAGCCGTGCAGAAGTTTTTCCTGGATGAGATCCAGCTTGGCGAGGAGCTCCTGGCCCAGGGAGACTACGAGAAGGGTGTTGATCACCTGACCAATGCCATCGCCGTCTGTGGACAACCCCAGCAGCTCCTGCAGGTGCTTCAGCAGACCCTGCCTCCGCCCGTCTTCCAGATGCTGCTCACTAAACTGCCAACGATCAGTCAGCGGATCGTAAGCTctcagagtctggaggaagacgACGTGGAGTGAGCCGGCTGATCTTCAGGTCTCCCCGCTCTTATTTATCACGTTCATTCCCGTGTTCTCATCCCGACCACGGCACCCATGCAGTGTCAGAGTTCATGTAAAGAggtgttatattttttattccggACATTCTCGTAACAATCGCGGATCTTTTGGATGCAAACGAAAGCATCGGTTTAAGAGTTGAGTATTTTATTACGGACCCGAAGCCGTTCTGTTTTCACACTCGATGGTTGTTCGTGGCTGATCCGTCTTCggtgtaattgttttttgtttgtggatCGTTTCGAGTGTTTTGGGCACGTTTGTATGCACTGAACTtaaattaatttccttttttttttgtattcattaaatACTTTAATGAA

Function

symbol description
tomm20a Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within protein targeting and regulation of transcription, DNA-templated. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate.

NR:

description
mitochondrial import receptor subunit TOM20 homolog

GO:

id name namespace
GO:0006605 protein targeting biological_process
GO:0005742 mitochondrial outer membrane translocase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K17770 TOM20; mitochondrial import receptor subunit TOM20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255630.1 True 892 mRNA 0.51 5 20142549 20145468

Neighbor

gene id symbol gene type direction distance location
irf2bp2a irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 coding downstream 38677 20101059 ~ 20103872 (-)
LOC122356780 NA coding downstream 106076 20025669 ~ 20036473 (-)
LOC122356781 NA coding downstream 117288 19996649 ~ 20025261 (-)
map10 NA coding downstream 453616 19685919 ~ 19688933 (-)
ntpcr ntpcr,LOC107557727 coding downstream 457216 19680245 ~ 19685333 (-)
arid4b arid4b,LOC107690809,LOC107557720,LOC107667027,LOC107728306 coding upstream 4990 20150458 ~ 20218900 (-)
b3galnt2 b3galnt2,LOC107730378,LOC107667096,LOC107728324 coding upstream 100019 20245487 ~ 20264253 (-)
lyst lyst,LOC107691204,LOC107728318,LOC107689764,LOC107569426 coding upstream 130309 20275777 ~ 20345682 (-)
nid1a nid1,LOC107691203,LOC107750138,LOC107689759,LOC107728305,LOC107575665 coding upstream 201679 20347147 ~ 20502648 (-)
eif2ak2 NA coding upstream 376179 20521647 ~ 20542635 (-)
LOC122356209 NA non-coding downstream 1591 20108191 ~ 20140958 (-)
G95469 NA non-coding downstream 66612 20075371 ~ 20075937 (-)
G95190 NA non-coding downstream 296015 19846301 ~ 19846534 (-)
LOC122356282 NA non-coding downstream 306896 19818053 ~ 19835653 (-)
G95147 NA non-coding downstream 472218 19669709 ~ 19670331 (-)
G95506 NA non-coding upstream 91210 20236678 ~ 20238227 (-)
G95519 NA non-coding upstream 369305 20514773 ~ 20515311 (-)
G95524 NA non-coding upstream 373132 20518600 ~ 20520093 (-)
G95537 NA non-coding upstream 474579 20620047 ~ 20620719 (-)
G95535 NA non-coding upstream 475794 20621262 ~ 20678269 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other downstream 220880 19909195 ~ 19921669 (-)
disc1 LOC107666898,LOC107730373 other downstream 235487 19862530 ~ 19907062 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other downstream 780508 19286030 ~ 19362041 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other downstream 1167025 18957703 ~ 18975524 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other downstream 1469656 18545571 ~ 18672893 (-)
LOC122356211 gng4 other upstream 119258 20264726 ~ 20275386 (-)
G95520 NA other upstream 334457 20479925 ~ 20486704 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other upstream 343317 20488785 ~ 20492076 (-)
G95511 NA other upstream 348174 20493642 ~ 20496864 (-)
G95526 NA other upstream 424570 20570038 ~ 20571562 (-)

Expression


Co-expression Network