galm (galm,LOC107586487,LOC107699302)


Basic Information

Item Value
gene id galm
gene name galm,LOC107586487,LOC107699302
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4607224 ~ 4611108 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255642.1
CAGTGGGCGGAGCTTTGTAGTTTATTAACTCAGAGTGTAGTCGTTTGTGCCGCAGTGTCGTGGCTTGCTTGGGAATGACAGAGGTGTGTAAAGAGGAGAGGGGTGCAGCGGAGAGCTGGAGGCTGTGCTCCGGCGCGGTGAGCGTGGAGATACTTTCCCTGGGCTGCGTGGTCCAGTCCATCAGGACCCCCGACCGACGCGGGCAGAGCGCGGATGTAGTGCTAGGATACGACGAAGCCGAAGGCTATCTCTCAAACCCTCGCTACTTTGGAGCTGTGATAGGCCGGGTTGCAAACCGCATTGCCAAGGGCCGATTTGTGCTAGACCAGAAGGAATATAAACTGGCTATAAACAATGGACCCAATGCTCTGCATGGAGGACTAAAGGGCTTTGACAAgGCCGTGTGGAGCGCAGAGGCGGTGGATAACGGAGTGAAGCTGAGTCACAGCAGTCCAGATGGAGATGAGGGATATCCCGGGAGCCTAAAGGCCTCCGTCACCTACAGGCTGGAGAAGAACACACTGAGTGTGCTGTACCACGCACAGACGGACCGGACTACACCCGTCAACCTCACCAACCATTCATACTTCAACCTGGCTGGACAGGGGACGGCAGACATCTACGACCATGAGGTGACCATCTTAGCAGACTCGTACTTGCCTGTGGATGATACGATGATCCCCACAGGGGAGGTGAAACCTGTGGAGAAGACCCCGTTTGACCTGAGAAAGCCTGTCCTTCTGGGCTCCAGACTGAAAGAGCTGCCCGGTCCAGGTTTTGATCACAACTTCTGTCTGTGTTCACCAGGCGATCCGCCACTTGAGCGGAAATGTGCTCGAGTGGTGCATCCTGGGACGGGTCGTGTCCTGGAGGTCAGCACTACACAGCCCGGGGTTCAGTTCTACACGTCCAACTTCCTGGATGGGACGCTGAAAGGAAAGGGTGGAGCCGCTTACTCAAAACACAGTGCCTTCTGCGTAGAGACCCAAAACTGGCCAGACGCCGTTAACCagCCTCATTTTCCTGATGCTCTGCTGAAGCCAGGAGAGACGTACACGCACGCAACACACTTCACATTCTCAGTGCTCTGAAATTACATCAGCATGTGAAGTTTACTTTTACAACTGAACATCTTTTCTACAGAACCAATACAATGTACTGCTTTTAAGACCA

Function

symbol description
galm Predicted to enable aldose 1-epimerase activity. Predicted to be involved in galactose catabolic process via UDP-galactose and glucose metabolic process. Predicted to act upstream of or within hexose metabolic process. Human ortholog(s) of this gene implicated in galactosemia. Orthologous to human GALM (galactose mutarotase).

NR:

description
aldose 1-epimerase isoform X3

GO:

id name namespace
GO:0019318 hexose metabolic process biological_process
GO:0030246 carbohydrate binding molecular_function
GO:0004034 aldose 1-epimerase activity molecular_function

KEGG:

id description
K01785 galM, GALM; aldose 1-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255642.1 True 1173 mRNA 0.54 7 4607224 4611108

Neighbor

gene id symbol gene type direction distance location
socs5b socs5b,socs5,LOC107727375,LOC107586485,LOC107708402,LOC107699300 coding downstream 135274 4462022 ~ 4471950 (-)
prop1 LOC107727379,LOC107699286,LOC107586498 coding downstream 160936 4441892 ~ 4446288 (-)
ttc7a ttc7a,LOC107586483,LOC107678602 coding downstream 169732 4404523 ~ 4437492 (-)
epcam epcam,LOC107707150,LOC107727388,LOC107699297 coding downstream 253473 4351284 ~ 4353751 (-)
thada thada,LOC107586496,LOC107590015,LOC107707143,LOC107727367,LOC107590014 coding downstream 281749 4245731 ~ 4325475 (-)
hells hells,LOC107727385,LOC107586490,LOC107699304,LOC107708407,LOC107678596,LOC107589556 coding upstream 15280 4626388 ~ 4672250 (-)
gbf1 gbf1,LOC107708418 coding upstream 226670 4837778 ~ 4904092 (-)
ninl ninl,LOC107708420,LOC107589549,LOC107699311,LOC107727377,LOC107582480,LOC107678585 coding upstream 320311 4931419 ~ 4955793 (-)
sema4ga sema4ga,LOC107690158,LOC107582524,LOC107733683,LOC107678493,LOC107708465 coding upstream 397464 5008572 ~ 5040509 (-)
slf2 LOC107690156,LOC107582525,LOC107678590,LOC107567840 coding upstream 429456 5040564 ~ 5054042 (-)
G90785 NA non-coding downstream 22263 4560776 ~ 4584961 (-)
G90802 epas1,LOC107586486,LOC107727363,LOC107699276,LOC107589559,LOC107708405 non-coding downstream 36466 4545021 ~ 4570758 (-)
G90750 NA non-coding downstream 193453 4390355 ~ 4413771 (-)
LOC122356721 NA non-coding downstream 259700 4338842 ~ 4347524 (-)
G90633 LOC107590022,LOC107586473,LOC107758132,LOC107666233 non-coding downstream 593223 4010173 ~ 4014001 (-)
G90842 NA non-coding upstream 139324 4750432 ~ 4750968 (-)
G90846 NA non-coding upstream 218643 4829751 ~ 4833144 (-)
G91022 NA non-coding upstream 347275 4958383 ~ 4959411 (-)
G91025 NA non-coding upstream 353494 4964602 ~ 4964959 (-)
LOC122356716 NA non-coding upstream 517404 5128512 ~ 5129707 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 551811 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 651269 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 1171644 3422753 ~ 3435580 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other downstream 1308675 3281337 ~ 3298549 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other downstream 1362328 2990418 ~ 3244896 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other upstream 61858 4672966 ~ 4689168 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other upstream 79774 4690882 ~ 4779732 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 1309394 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 1450577 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1609067 6220175 ~ 6227272 (-)

Expression


Co-expression Network