rufy2 (rufy2,LOC107725492,LOC107743555,LOC107563060,LOC107676589)


Basic Information

Item Value
gene id rufy2
gene name rufy2,LOC107725492,LOC107743555,LOC107563060,LOC107676589
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8324645 ~ 8337036 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255655.1
GCAGACGGGTCGTGCGGGAGCGCTCGGGTGTAAACAAATCTGGAAAGCCGTTCGTTCGCGAGACATGCGTGGAAAGCGCACGTCGCGCGCGGGGCGTTGACGAGGAGCACCGCCGCGGAAAGCGCTCGAATTAGCTCGTTGACCGTTTATCGATGCCGCTCGACGCCTCGCCGCCGCGGTGGTTGGGTGAAGCGCTATCCTGAGCCGCGCGCCGTCGTCGTTAGCGATGGCGACACCTGCAGAACAGGACCTCGTGCTGGCAGAAGCAGAGAGCAACAAAGAGAGAGCGCAAGTGTTCGGCGTCCTCAGGCTGCAGGAGGACAAGTCGGCCGCCGCCGAGAAAGCGAGCGGCGCTGCCATGAAATCTGGGGACGGGAGATGGCAGGCGCCCATATTCGCGTTAGCCCGAAAAGCGTCAGAGACCTTCTCGGGTGGCATTCACGTCCTGCCCAAAGTGGCGGAGCCCAAAACGTCGCCCTTTTCCGAAGAGTGGGGCGCGAAGGCATTTCGAGACCCTACGGCGATGGAACGAGCGAACTTGCTTAATATGGCTAAGCTCAGTATCAAAGGCCTGATCGAGTCGGCTCTGAGCTTTGGGCGAACTCTGGACTCTGACTATCCGCCTCTGCAACAGTTCTTTGTTGTCATGGAGCACTGCCTGAAACACGGTCTCAAAGTGAAGAAATCGTTCCTTGGATACAACAAGTCGCTGTGGGGGCCTCTAGAGATGGTTGAGAAGCTCTGCCCAGAAGCAGGCGAAATCGCAGCCAGTGTACGAGACCTTCCCGGCCTGAAGACGCCTCTGGGCAGAGCCAGAGCATGGCTGAGACTGGCACTGATGCAGAAGAAATTAGCAGATTACCTACGTCTCCTCATCACCAGGAAAGATATACTTAGTGAGTTCTATGAGAACTCTGCAGTGATGCTGGAGGAGGAGGGAGCCGTCATCGTTGGTCTCCTGGTGGGGCTTAACGTCATAGATGCCAACTTATGTGTGAAGGGCGAGGACCTTGATACACAAGTTGGTGTAATAGACTTCTCCATGTACTTGAAGAATGACATTGATGATTACAGAAGCGAAGAAAGAAATGGACAAATTGCAGCTATTTTGGATCAGAAGAACTACGTTGAAGAATTAAATAGGCAGCTGAATTCTACAGTTCAAGGCTTACAGGGACGCGTGGAGTCATTAGAAAAATCCAATTCCAAACTCATTGAAGAGTTGGCAATagcaaaaaacaacataattaaattacaagAAGAGAACCACCAACTCAGAACAGAAAATTCAGTGATTCTTATGAAAGCACAGCAGCGTCTTGAGGTTGCAGAAGGAGATTTGAACTGTGAGCTTGACACGTACAAGCAGTCAAGGCAGGGCCTGGATGAAATGTACAATGAGGCAAGACGGCAACTCAAAGAGGAATGTCAACTCAGGCAGGATGTGGAGAACGAACTGGTTGTGCAGGTCAGCATGAAGCAGGAGATGGAAATGGCCATGAAACTGTTAGAAAAGGACATCCATGAAAAGCAAGACACTCTGATTGGACTTCGGCACCAGTTAGATGAGGTGAAAGCCATCAATGTGGAGATGTACCAAAAAATGCagTCTTCAGATGACAGCATgagacaaaaaaatgacatgatcGCAAGGTTGGAGGAGAAGACCAATCAGATAACGGCGACTATGAAACAACTAGAACAAAGATTGCAGGATGCCGAGAGGGAGCGTGCCAGTGCCGAAGACGGGGTGCGCAAATTCAAGCAGGACTTCACAAACAAAGCTGACAGCCTTCAAAAGCAGATCGCCCAGAGAGAGAAGCAAATgatGCAGCTGGAAACAGATTTGAAAATAGAAAGGGACTGGCGTCAGACGTTACAGAATGAATTAGAAAGAGAACGAGAGACTATCGCCCAACTCACAGCTGAAGCACAGCAAATCAATGGACTTAAAAAAGAGTTTCACAGGTTGCAAGATGAGAACACGCAGCTGAAGGGAATCTGTGAGGAGCAGGAACAGGCGCTGGAGGAGCTGGGCTGCAAACTCAGCGAgtcaaaattgaaaattgaagATATAAAAGAAGCCAACAAGGCACTTCAgGGTGGACAGGTCTGGCTGAAAGACAAAGATGCTACGCATTGCAAACTTTGCGAGAAGGAATTTTCAATCTCCAGAAGAAAGCACCACTGCAGGAACTGTGGGGAGATCTTCTGCAATGCCTGCTCAGATAATGAGCTGCCACTTCCCGCTTCGCCCAAACCCGTGAGAGTCTGCGACACCTGCCACGCTCTTCTCCTCCAACGCTGCTCCTCCAATGCCACGTAAGATAGAAATGACAGCACATCGTCACAAGGGCCAAAATCAGCTTTAACTCACAGACTGCGCTGTCCAGCATCGTCAAAGTGACCAAAATGGATGCACACGTTTCTCTGTGTTTGAAGTTTACATTTCACAAAAGCCTGTTGCCTCAGAGAAGACTTAATGGCGCGTGTGCAGATGGCCAATGCAGTGTTTGTCACAGACACAGtgcaatgaaagaaaatgagttTACAAATGGATTAATGACTCTGAGTGCCTCCATCTGGGCTGCAACTAGACTGATTTAGGTTATTTATACTAGTACAACACTCCCATGCATTGTAAGTATACTTTTGATATATAAGGGTGAACAGGTTTCATTCCTCAAGAGTCAGAAGTGAGTAAATGCAGTTACTTAAAGTGATATCATTTCTTGAgcaattatatttcaaattcagTTGAAATACATAACCTTACATTCATGCGTGCCTGTATAACAAGCCAAACTGACGAATGGGGATTTGATGAATATTTCCCTGAATCTAGACgggcaaaaaaaatgtatgggtATATGtaagtaaaaatagttttagtgctGCTCGAGAATGACTGAGGTGGATTCACTTTAAATAGCACAGAAATAACGTTCTGAATATGGTGTTCAGGTTTCTTGTCTGCAAGCGGTATTATTTCACAGTTGCAGGTTTACTTTTGTACAGAACTGGAACACTACTCACTTTTGAGTATTTGTGCTAACGTTTGTCTGGATAATTCCTCGAAATACAACTGTTAACTTAAATGTGAAGTTTATGTATGAAACTATACATACGCCTTAAATCACTAAAGTTGATCATAATTTCAA
>XM_043255656.1
CCGAGAGACAAGAAGTTCGTCTTCAGTCTGGAAGGGGTCGTGGAGCAGCAGTGATGTATTCCCCTCAGAGCCTCCACCGGTGGGGCATCACACATAGTGAAAGTATGGAGCGCTTGGCCTACAGTCAAGCATTTCGAGACCCTACGGCGATGGAACGAGCGAACTTGCTTAATATGGCTAAGCTCAGTATCAAAGGCCTGATCGAGTCGGCTCTGAGCTTTGGGCGAACTCTGGACTCTGACTATCCGCCTCTGCAACAGTTCTTTGTTGTCATGGAGCACTGCCTGAAACACGGTCTCAAAGTGAAGAAATCGTTCCTTGGATACAACAAGTCGCTGTGGGGGCCTCTAGAGATGGTTGAGAAGCTCTGCCCAGAAGCAGGCGAAATCGCAGCCAGTGTACGAGACCTTCCCGGCCTGAAGACGCCTCTGGGCAGAGCCAGAGCATGGCTGAGACTGGCACTGATGCAGAAGAAATTAGCAGATTACCTACGTCTCCTCATCACCAGGAAAGATATACTTAGTGAGTTCTATGAGAACTCTGCAGTGATGCTGGAGGAGGAGGGAGCCGTCATCGTTGGTCTCCTGGTGGGGCTTAACGTCATAGATGCCAACTTATGTGTGAAGGGCGAGGACCTTGATACACAAGTTGGTGTAATAGACTTCTCCATGTACTTGAAGAATGACATTGATGATTACAGAAGCGAAGAAAGAAATGGACAAATTGCAGCTATTTTGGATCAGAAGAACTACGTTGAAGAATTAAATAGGCAGCTGAATTCTACAGTTCAAGGCTTACAGGGACGCGTGGAGTCATTAGAAAAATCCAATTCCAAACTCATTGAAGAGTTGGCAATagcaaaaaacaacataattaaattacaagAAGAGAACCACCAACTCAGAACAGAAAATTCAGTGATTCTTATGAAAGCACAGCAGCGTCTTGAGGTTGCAGAAGGAGATTTGAACTGTGAGCTTGACACGTACAAGCAGTCAAGGCAGGGCCTGGATGAAATGTACAATGAGGCAAGACGGCAACTCAAAGAGGAATGTCAACTCAGGCAGGATGTGGAGAACGAACTGGTTGTGCAGGTCAGCATGAAGCAGGAGATGGAAATGGCCATGAAACTGTTAGAAAAGGACATCCATGAAAAGCAAGACACTCTGATTGGACTTCGGCACCAGTTAGATGAGGTGAAAGCCATCAATGTGGAGATGTACCAAAAAATGCagTCTTCAGATGACAGCATgagacaaaaaaatgacatgatcGCAAGGTTGGAGGAGAAGACCAATCAGATAACGGCGACTATGAAACAACTAGAACAAAGATTGCAGGATGCCGAGAGGGAGCGTGCCAGTGCCGAAGACGGGGTGCGCAAATTCAAGCAGGACTTCACAAACAAAGCTGACAGCCTTCAAAAGCAGATCGCCCAGAGAGAGAAGCAAATgatGCAGCTGGAAACAGATTTGAAAATAGAAAGGGACTGGCGTCAGACGTTACAGAATGAATTAGAAAGAGAACGAGAGACTATCGCCCAACTCACAGCTGAAGCACAGCAAATCAATGGACTTAAAAAAGAGTTTCACAGGTTGCAAGATGAGAACACGCAGCTGAAGGGAATCTGTGAGGAGCAGGAACAGGCGCTGGAGGAGCTGGGCTGCAAACTCAGCGAgtcaaaattgaaaattgaagATATAAAAGAAGCCAACAAGGCACTTCAgGGTGGACAGGTCTGGCTGAAAGACAAAGATGCTACGCATTGCAAACTTTGCGAGAAGGAATTTTCAATCTCCAGAAGAAAGCACCACTGCAGGAACTGTGGGGAGATCTTCTGCAATGCCTGCTCAGATAATGAGCTGCCACTTCCCGCTTCGCCCAAACCCGTGAGAGTCTGCGACACCTGCCACGCTCTTCTCCTCCAACGCTGCTCCTCCAATGCCACGTAAGATAGAAATGACAGCACATCGTCACAAGGGCCAAAATCAGCTTTAACTCACAGACTGCGCTGTCCAGCATCGTCAAAGTGACCAAAATGGATGCACACGTTTCTCTGTGTTTGAAGTTTACATTTCACAAAAGCCTGTTGCCTCAGAGAAGACTTAATGGCGCGTGTGCAGATGGCCAATGCAGTGTTTGTCACAGACACAGtgcaatgaaagaaaatgagttTACAAATGGATTAATGACTCTGAGTGCCTCCATCTGGGCTGCAACTAGACTGATTTAGGTTATTTATACTAGTACAACACTCCCATGCATTGTAAGTATACTTTTGATATATAAGGGTGAACAGGTTTCATTCCTCAAGAGTCAGAAGTGAGTAAATGCAGTTACTTAAAGTGATATCATTTCTTGAgcaattatatttcaaattcagTTGAAATACATAACCTTACATTCATGCGTGCCTGTATAACAAGCCAAACTGACGAATGGGGATTTGATGAATATTTCCCTGAATCTAGACgggcaaaaaaaatgtatgggtATATGtaagtaaaaatagttttagtgctGCTCGAGAATGACTGAGGTGGATTCACTTTAAATAGCACAGAAATAACGTTCTGAATATGGTGTTCAGGTTTCTTGTCTGCAAGCGGTATTATTTCACAGTTGCAGGTTTACTTTTGTACAGAACTGGAACACTACTCACTTTTGAGTATTTGTGCTAACGTTTGTCTGGATAATTCCTCGAAATACAACTGTTAACTTAAATGTGAAGTTTATGTATGAAACTATACATACGCCTTAAATCACTAAAGTTGATCATAATTTCAA
>XM_043255657.1
ACGGGTCGTGCGGGAGCGCTCGGGTGTAAACAAATCTGGAAAGCCGTTCGTTCGCGAGACATGCGTGGAAAGCGCACGTCGCGCGCGGGGCGTTGACGAGGAGCACCGCCGCGGAAAGCGCTCGAATTAGCTCGTTGACCGTTTATCGATGCCGCTCGACGCCTCGCCGCCGCGGTGGTTGGGTGAAGCGCTATCCTGAGCCGCGCGCCGTCGTCGTTAGCGATGGCGACACCTGCAGAACAGGACCTCGTGCTGGCAGAAGCAGAGAGCAACAAAGAGAGAGCGCAAGTGTTCGGCGTCCTCAGGCTGCAGGAGGACAAGTCGGCCGCCGCCGAGAAAGCGAGCGGCGCTGCCATGAAATCTGGGGACGGGAGATGGCAGGCGCCCATATTCGCGTTAGCCCGAAAAGCGTCAGAGACCTTCTCGGGTGGCATTCACGTCCTGCCCAAAGTGGCGGAGCCCAAAACGTCGCCCTTTTCCGAAGAGTGGGGCGCGAAGGCATTTCGAGACCCTACGGCGATGGAACGAGCGAACTTGCTTAATATGGCTAAGCTCAGTATCAAAGGCCTGATCGAGTCGGCTCTGAGCTTTGGGCGAACTCTGGACTCTGACTATCCGCCTCTGCAACAGTTCTTTGTTGTCATGGAGCACTGCCTGAAACACGGTCTCAAAGTGAAGAAATCGTTCCTTGGATACAACAAGTCGCTGTGGGGGCCTCTAGAGATGGTTGAGAAGCTCTGCCCAGAAGCAGGCGAAATCGCAGCCAGTGTACGAGACCTTCCCGGCCTGAAGACGCCTCTGGGCAGAGCCAGAGCATGGCTGAGACTGGCACTGATGCAGAAGAAATTAGCAGATTACCTACGTCTCCTCATCACCAGGAAAGATATACTTAGTGAGTTCTATGAGAACTCTGCAGTGATGCTGGAGGAGGAGGGAGCCGTCATCGTTGGTCTCCTGGTGGGGCTTAACGTCATAGATGCCAACTTATGTGTGAAGGGCGAGGACCTTGATACACAAGTTGGTGTAATAGACTTCTCCATGTACTTGAAGAATGACATTGATGATTACAGAAGCGAAGAAAGAAATGGACAAATTGCAGCTATTTTGGATCAGAAGAACTACGTTGAAGAATTAAATAGGCAGCTGAATTCTACAGTTCAAGGCTTACAGGGACGCGTGGAGTCATTAGAAAAATCCAATTCCAAACTCATTGAAGAGTTGGCAATagcaaaaaacaacataattaaattacaagAAGAGAACCACCAACTCAGAACAGAAAATTCAGTGATTCTTATGAAAGCACAGCAGCGTCTTGAGGTTGCAGAAGGAGATTTGAACTGTGAGCTTGACACGTACAAGCAGTCAAGGCAGGGCCTGGATGAAATGTACAATGAGGCAAGACGGCAACTCAAAGAGGAATGTCAACTCAGGCAGGATGTGGAGAACGAACTGGTTGTGCAGGTCAGCATGAAGCAGGAGATGGAAATGGCCATGAAACTGTTAGAAAAGGACATCCATGAAAAGCAAGACACTCTGATTGGACTTCGGCACCAGTTAGATGAGGTGAAAGCCATCAATGTGGAGATGTACCAAAAAATGCagTCTTCAGATGACAGCATgagacaaaaaaatgacatgatcGCAAGGTTGGAGGAGAAGACCAATCAGATAACGGCGACTATGAAACAACTAGAACAAAGTGACAAAGATCTACTCAGCCAGACAAGAACTCTTGCTATGTCGTTTGTAAAATGCGCTAGCACAGATACCGAGCACCAGTACAAACTAGTCAAAGACATTTCCTTCTGATATTAAGATAAATTTGCTCTTTGTTTCTTAACACTAGTAGTGTGGCGATACGCAGTGTTCTTAAAAGTTGATCGTTCTTCACTAGCCccttttaaagtttaatttgaTGATGGTTACTGTTTTTCCACATACTATTTAGTGAGCAAATCTTTCTTGTGGTTCTATAGCATAAATATTTACCTGTAACAATTAACAGTAAAAGAAACCACAAATATGACATGTCTTTTATCACGCTCTTCAATAAATTTGATGTTTTCAACTA

Function

symbol description
rufy2 Predicted to enable metal ion binding activity. Predicted to be active in cytoplasm. Orthologous to human RUFY2 (RUN and FYVE domain containing 2).

NR:

description
PREDICTED: RUN and FYVE domain-containing protein 2-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12482 RUFY1_2, RABIP4; RUN and FYVE domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255655.1 True 3161 mRNA 0.47 18 8324645 8336065
XM_043255656.1 False 2787 mRNA 0.45 18 8324645 8337036
XM_043255657.1 False 2074 mRNA 0.48 13 8329124 8336061

Neighbor

gene id symbol gene type direction distance location
LOC122356684 LOC107666548,LOC107743620,LOC107676590,LOC107563041,LOC107601825,LOC107725441,LOC107601828 coding downstream 5830 8315189 ~ 8318815 (-)
LOC122356681 LOC107743620,LOC107666548,LOC107676590,LOC107563041,LOC107725441,LOC107601825,LOC107601828 coding downstream 9821 8309437 ~ 8314824 (-)
LOC122356683 LOC107666548,LOC107743620,LOC107676590,LOC107563041,LOC107601825,LOC107725441,LOC107601828 coding downstream 15996 8306483 ~ 8308649 (-)
LOC122356685 pbldp,pbld,LOC107676590,LOC107743620,LOC107563041,LOC107666548,LOC107601825,LOC107725441,LOC107601828 coding downstream 18797 8303493 ~ 8305848 (-)
LOC122356686 pbld,LOC107601828,LOC107743620,LOC107676590,LOC107725441,LOC107563041,LOC107666548,LOC107601825 coding downstream 21737 8300820 ~ 8302908 (-)
tspan15 tspan15,LOC107563042,LOC107601779,LOC107743619,LOC106612421,LOC106589828 coding upstream 6060 8343096 ~ 8361457 (-)
hk1 hk1,LOC107676584,LOC107725457,LOC107666459,LOC107743551 coding upstream 31901 8368937 ~ 8381953 (-)
hkdc1 hkdc1,LOC107743550,LOC107725456,LOC107676583,LOC103047009 coding upstream 50010 8387046 ~ 8396309 (-)
supv3l1 supv3l1,LOC107725491,LOC107601833,LOC107666535,LOC107743553,LOC107676608,LOC107563062 coding upstream 59843 8396879 ~ 8402518 (-)
vps26a vps26a,LOC107676600,LOC107666532 coding upstream 66132 8403168 ~ 8408645 (-)
G91916 NA non-coding downstream 56572 8267766 ~ 8268073 (-)
G91891 NA non-coding downstream 102030 8168737 ~ 8222615 (-)
G91889 NA non-coding downstream 156713 8157258 ~ 8167932 (-)
G91796 NA non-coding downstream 192797 8131243 ~ 8131848 (-)
G91769 NA non-coding downstream 283427 7997680 ~ 8041218 (-)
G91960 NA non-coding upstream 97990 8435026 ~ 8435920 (-)
G91967 LOC107743599,LOC107601782,LOC107725459,LOC107666363 non-coding upstream 128045 8465081 ~ 8468983 (-)
G91968 NA non-coding upstream 132236 8469272 ~ 8471302 (-)
G92004 NA non-coding upstream 254322 8591358 ~ 8592574 (-)
G92021 pcnxl2,LOC107725461,LOC107601842,LOC107666362,LOC107743596,LOC107676602 non-coding upstream 330460 8667496 ~ 8678386 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 276744 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 508266 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 1825072 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 1928219 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 2097373 6220175 ~ 6227272 (-)
G92267 NA other upstream 778057 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1837377 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 2295214 10632250 ~ 10634566 (-)
G92819 NA other upstream 2587908 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2863516 11200552 ~ 11218985 (-)

Expression


Co-expression Network