march5 (march5,LOC107719203,LOC107549154,LOC107747250,LOC107665589)


Basic Information

Item Value
gene id march5
gene name march5,LOC107719203,LOC107549154,LOC107747250,LOC107665589
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16469935 ~ 16487675 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255680.1
CGCGCAAGCGCGGTGCTGCGTCCGCTAGCGTTTTCTCACGCGCAGTCAATGGAGTCGCTGCGCGTTTCTGGaattacttacatttataaatattcattcatgGATCGGTTTTTAATAACCAATCTCAGTGGTTTATAATCAGGTTTCGGCTGTGGTTTGATGACAGTAAGACCCTCGCATGCGTGTTTAGCACGGTGTTAGGGTTCCCCGCGGCCTGACCGATTAAAtctctattattaaaatatttttaatattgtccTAATTTAGTTTTCAGTCATTACTTAAGTGCGCGGACTCATGTAAATATGGCAGAAGAGGGAGCGGTTGTGATGCAGCAGATTGTGGACAGgAGTTGTTGGGTGTGTTTTGCCACAGACGAGGACGACCGCACGGCGGAGTGGGTGCGTCCGTGCCGCTGCCGCGGTTCGACTAAATGGGTTCATCAGTCGTGTCTTCAGCGCTGGGTGGATGAGAAACAGAGAGGCAACAGCACCGCGCGCGTCGCCtgcccacaatgcaatgcagaaTACCTTATCGTGTTCCCAAAGCTTGgGCCGGTGGTGTATGTGCTGGATCTGGCGGACCGGTTGATCTCGAAGGCCTGTCCGTTTGCTGCCGCTGGTATCATGGTGGGATCTATTTACTGGACGGCCGTCACATACGGGGCCGTGACAGTCATGCAGgtTGTGGGTCATAAGGAAGGTCTGGATGTGATGGAACGAGCCGATCCTCTCTTCTTGCTGATCGGTCTGCCAACCATCCCAGTTATGCTAATTCTAGGGAAGATGATTCGCTGGGAGGATTATGTGCTCCGCCTCTGGAGGAAATACTCCAATAAGCTTCAGATCCTCAACAGTATCTTCCCAGGTATCGGCTGCCCAGTGCCCAGGATCCCGGCGGAGGCCAGTCCTCTGGCCGATCACGTGTCTGCTACACGCATTCTGTGCGGCGCCCTCGTCTTCCCCACCATCGCCACCATCGTGGGCAAACTGATGTTCAGCAGCGTCAACTCAAACCTACAGAGGACCATTCTGGGTGGCATTGCGTTTGTGGCTATTAAAGGGGCGTTTAAGGTTTATTTCAAGCAGCAGCAGTATCTCCGGCAAGCTCATCGCAAGATCCTCAATTTCCCCGAGGCGGACGAGGCCTGAGCTCGCCGTCGACTCCCGTCCACGTCATTCTGATTTCACGCAGCTTTGAAAGACACTACCGCGACACACTACCGGACTTTTCACAGACGCTGGATTTGGTTTTCTCCTCCTCCTTGTGAACGCGACCGTTGCGTTCGGAGCTCGAGCTTCGTTTCAGTCGGTACAATCGGATCCGAGAGTTACTTGTTTTATGGGCTTTGGCGTTTTAAGAGAGGGACAACCGAGGGGAATGAATGTCGAGAGGTTTTATATTGTAAGCGGTTGTTTTATATTGAAGtagaaatgtttcatgtttaaaGCATTGAGACGACGTGCCGTTTCACACGAAGCACTTCCTTCCCCTCGTTGATAACTAGACCAGCGAATGCAACGTTAAATATACTAAAGGCAAATGTAAACAACTTTCGTCGTTTCCcccaaaccttttaaaatatgatttttttttggtggttgTTCTCCGATGAATTTCACAAAGATATTTACCCATTTCcaccaaaatcaaaagaaatgaattgttttgcatataaaaaaaaaaagaagactctggggagttgtttttgtttcaacTCGGAACATATCATATATAGtattaaaattatactttaCAAATATCTCTAATTGacaatttagtttttgtagtttttagcGCGGAAAAATCGCaatcgcattttttttttttggtattacATTCAGTTTTGGGATGAAATATGACCGCTTCTGTGAAATTCATCTTTCCTGCCTTCACACGATTTCTGTTGAATTTCCATCTTTGCGCTGTTGATGTCTGAGTTTCAGGGAGTCTGTTTTTTAAGGCCCCCCCGGTACAAAGCGAGAATCCAGTGTTTGGTCCTTAATCGATCACTTTATTAAAACCTTGTGGTACCTAATGCCTCATATCAGTTGTTAATAAACCCGTCTCGTGTAGAACAGTGAACTTTAAGAGTATTAGTGGCCTTTTTATTACACCAGGACAGTGCGTGTCTTAAAGGTTACATGGTTAACGGGTTTATTTGCTGAATAAGCcaatttcctatttttttttttttcctgaatcaTTGTGTTTGATGAGTTTCTAATTAATGTAGTGCTTCTGTTGTATCTCCAGCCATCAGCAACTGTGAAGTTTCCAGGCCAATGCATACTAGTACCGTTTTGTAGTACACTGCAGCGGGCAGTGATAGGCGggtgttttatattaaagagCGTGCGCAATTAATTATATTCACACCTAATTAACTATTGGAGTGCTTTTTGTCCATACTATATCATTACAGCTTCTTTATGATAGGAGTAAACCTGAAAGAACGCGCTTAGTGCTAACAGAGTCGCTAGGAAATAGTGTTCATTACGTACACCCAACCGCGAGATTAGAAGTAGCAGATGACTTTTTCTGTTGCCTAAATATGAATTGAAGTTCTTTCTTCTCAGcatctgtttgtgctgtgtaaTATCAGTGGGGTAATATATGTCTCCCGTTGTACAGATGAAGCATAATGCCAAATACAGAACGTGTATGTTGTATAAATGGATGCTTTGTACAGATACGGCTTCTGAATTTATAGTTTCCTGGttgatttatgtaaataaatgtatttttccaaTGCCTGACTGTGTGTGTTGGGCATTTTGAGTGTTTCATTTGGACTAAAATGTTTCTTAGCGTTGAGATAAATGAAGTGATTGCTCCTAAAATCTGGTATCATTTTTGTCACTAATGATACAACTGGGCTGCAATTGTGTGTTGCTGTCTCCAGGCGTGAAAAAAAGGCTTTCCTTTCACGAATTAAGCCTGTTTATAAGACCATcgaaatacatatttaaaaaaagtca

Function

symbol description
march5 Predicted to enable zinc ion binding activity. Acts upstream of or within convergent extension. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; eye; and optic vesicle. Orthologous to human MARCHF5 (membrane associated ring-CH-type finger 5).

NR:

description
E3 ubiquitin-protein ligase MARCH5

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255680.1 True 2981 mRNA 0.44 6 16469935 16487675

Neighbor

gene id symbol gene type direction distance location
trnah-gug_23 NA coding downstream 22173 16447691 ~ 16447762 (-)
LOC122356747 kmo,LOC107665616,LOC107549141,LOC101885014,LOC106576798 coding downstream 24196 16432695 ~ 16445739 (-)
LOC122356349 rmdn2,LOC101884968,LOC107719222,LOC107549137,LOC107665553,LOC107747279,LOC107676373 coding downstream 108130 16335024 ~ 16361805 (-)
LOC122356736 nanp,LOC107586073,LOC107736515,LOC107665564,LOC107549144,LOC107676393,LOC107719206 coding downstream 165607 16302209 ~ 16304328 (-)
ipmka LOC107747295,LOC107665575,LOC107719230,LOC107586076,LOC107549139 coding downstream 180218 16279665 ~ 16289717 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276,LOC106604898 coding upstream 31861 16519536 ~ 16538481 (-)
LOC122356270 LOC107549152,LOC107747275 coding upstream 55406 16543081 ~ 16546492 (-)
fam83ha NA coding upstream 59511 16547186 ~ 16557976 (-)
lrrfip2 lrrfip2,LOC107679173,LOC107676384,LOC107734278,LOC107586082,LOC107724585 coding upstream 83873 16571548 ~ 16592072 (-)
capn1a capn1a,LOC107679188,LOC107676389,LOC107734280,LOC107586085,LOC107549131 coding upstream 107292 16594967 ~ 16606922 (-)
G94416 opn3,LOC107665579,LOC107747290,LOC107549142,LOC107549136,LOC107586115 non-coding downstream 37505 16430674 ~ 16432430 (-)
G94414 opn3,LOC107665579,LOC107549142,LOC107747290,LOC107719228 non-coding downstream 39642 16429841 ~ 16430293 (-)
G94411 opn3,LOC107549142,LOC107665579,LOC107747290,LOC107719228,LOC107586115 non-coding downstream 46142 16422666 ~ 16423793 (-)
G94308 NA non-coding downstream 93012 16376573 ~ 16376923 (-)
G94298 LOC107549156,LOC107665613,LOC107747251,LOC107676394,LOC107719205 non-coding downstream 137588 16330142 ~ 16332347 (-)
G94425 NA non-coding upstream 28182 16515857 ~ 16518826 (-)
G94453 mlh1 non-coding upstream 80240 16567915 ~ 16569250 (-)
G94455 mrpl14,LOC107676385,LOC107679189,LOC107734281 non-coding upstream 105750 16593425 ~ 16594731 (-)
G94511 NA non-coding upstream 496831 16984506 ~ 17015657 (-)
G94516 NA non-coding upstream 534428 17022103 ~ 17030063 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 43400 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 177556 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 300731 16009687 ~ 16169204 (-)
G94216 NA other downstream 584713 15877527 ~ 15885222 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other downstream 676395 15774777 ~ 15793540 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other upstream 887075 17374750 ~ 17387006 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 2057896 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 2470028 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 2798355 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 3374855 19862530 ~ 19907062 (-)

Expression


Co-expression Network