bsdc1 (bsdc1,LOC107655506,LOC107585415,LOC107734300)


Basic Information

Item Value
gene id bsdc1
gene name bsdc1,LOC107655506,LOC107585415,LOC107734300
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18119711 ~ 18126476 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255689.1
TGAACGCGgtgtttataaatattgttttgacgCGCTGGTGAGGTCAGAGTTCAGGCCATACCGATGTCGTCATGCGCTGAAGATGGCAGACGGGGAAGGAGGATGGTGGGGAGGCTGGCTGACACAGAGCTTCCAGGCCGTCAAAGACAAGTCAGCTGAGGCGTATGAGTTTATCAAACGGGACCTGACAGAATTCTCCAGTGTGGTCCAACATGACACGGCATGCTCCGTTGTTGCAACAGCGAATGCCATTAAGAGCAAACTGGCAGTTGAAAGTTCAACAGAGGCCACTGAAAAGGTGAAGAAGGGCCTTTCGAATATTTTGGGGGTGATCACAGACACTTTGGCCCCTCCCCCAGACAAGACCATCGACTGTGACGTCATCACGCTGGTAGCCACTCCGGCAGGTACAACAGAGGTGTACGACAGCGGCAAGGCTCGACTCTACAGTCTTCAAGCAGATCCCGCTACATACTGCAATGAGCCTGATGGCCCTCCGCAGCAGTTCGATACCTGGTTGTCCGGTTTCACACTGGAAGAGAGGAAAGCCGAGATCTCTGAACTGCTGGTCAACAGCCCCGCCATAAGAGCTCTTTATACTAAAATGGTGCCGGCAGCAGTGGCTCATTCAGAGTTCTGGCAGCGGTACTTCTATAAAGTGTTCCAGTTGGAGCAGGAGGAGGCAAGGAGAGTAGCGCTGAAGCAGAGAGCAGAGCAGACGGATCATTCTGAGAGTCTTGGTtgggaagaagaggaagaagaaggTGAGTTTCTCGGGGCCACGTCTTCATCTCGCTTAGACTTCACGCCGCCTGTCGAAGAGGCATGCGTCCCTTCGGTGAGGATAGAGGCCACCCCTGAAAGCTCCTCACCCTCTCAAGTGGTGGTTTCCTCCAGCAACGCAGCATCTGACGTCACACCCTCCGTAAGCAGCGACAGCGTTAGTTTTCCCACCCAGATCGAGAATCAAGCGGACTCCGTCACCATCCGAGTCACGCAGCCGTCGCCCGCTGCAGACGAGGTCTCTCAGAAACTCTCAGAGGCCAGTCTACAGGAGACGTGCCCAGAGGAGCGGCCCTCACAGCGTGAAGAAGGAGCTCAAGACCTCCGAGTGTTCGAGCTCAACTCGGACAGCGGCAAATCTACACCCTCCAATAACGGCAAGAAGGGTTCGAGTACAGATGTGAGTGAAGACTGGGAGAAGGATTTTGATCTGGATATGACAGAAGAGGAGGTTCAGATGGCTTTGTCTAAAATGGACGCAACAGAAGAGTTGGAAGATGAGGACTGGGAGAACTGGGAGTGAGAATCTGGTGGAGGGAATTTTGACCCGATATCGACATGAGACGTTGCTCTTCCCAAAGTGAACCatgcttaatataatatatatagactCCTAGTCTACGGCCACACCTGCTCATTCGACCAGCCCAGTGAGCAGGTCACCTCCTGCCGATCACATTTACACGCTAGCTAAACACATGTCCACCGAGCAGTGATCTGAAGTGGGAAGAGGTGATCTGTTCTCCTTCCGGCTGTCCTAAAACATGACCTGAAACACTAAGACTGATCAGAGAAAGCATGTATCGGTTAATGAGGAGAGGTCATCATTTGTACCTGCCGTATGTACATTAATGTTATTCTTCTTTGGAGATTTCAGTGGGAGAATGCAAATTAACTGCCGGGGCTCCCGATTAGCTGTAATCTATTAAGATGTTCATCATTCTTACAGGATTAGAAAGCAATCCTTCACATGAAAAATATGTGTAagttatggtttttttttttcttttcgcaTTATAGGCTTCTTTATTTAGCTTCTCTTGAAACGCTAACACCTTTAATCTTATGCAAGTTATTCTAGCATTGAGAATGGATATGGAGGATGCTTCATTCATTCTGCTGATGCTCCATGGCCTTGTTCAGTGTTGTgtggaatggaaaaaaaaaaaaaaagtgctttcacTAAATACACCTGTTGTTCCAGTGCTGTCA
>XM_043255690.1
TGAACGCGgtgtttataaatattgttttgacgCGCTGGTGAGGTCAGAGTTCAGGCCATACCGATGTCGTCATGCGCTGAAGATGGCAGACGGGGAAGGAGGATGGTGGGGAGGCTGGCTGACACAGAGCTTCCAGGCCGTCAAAGACAAGTCAGCTGAGGCGTATGAGTTTATCAAACGGGACCTGACAGAATTCTCCAGTGTGGTCCAACATGACACGGCATGCTCCGTTGTTGCAACAGCGAATGCCATTAAGAGCAAACTGGCAGTTGAAAGTTCAACAGAGGCCACTGAAAAGGTGAAGAAGGGCCTTTCGAATATTTTGGGGGTGATCACAGACACTTTGGCCCCTCCCCCAGACAAGACCATCGACTGTGACGTCATCACGCTGGTAGCCACTCCGGCAGGTACAACAGAGGTGTACGACAGCGGCAAGGCTCGACTCTACAGTCTTCAAGCAGATCCCGCTACATACTGCAATGAGCCTGATGGCCCTCCGCAGCAGTTCGATACCTGGTTGTCCGGTTTCACACTGGAAGAGAGGAAAGCCGAGATCTCTGAACTGCTGGTCAACAGCCCCGCCATAAGAGCTCTTTATACTAAAATGGTGCCGGCAGCAGTGGCTCATTCAGAGTTCTGGCAGCGGTACTTCTATAAAGTGTTCCAGTTGGAGCAGGAGGAGGCAAGGAGAGTAGCGCTGAAGCAGAGAGCAGAGCAGACGGATCATTCTGAGAGTCTTGGTtgggaagaagaggaagaagaaggTGAGTTTCTCGGGGCCACGTCTTCATCTCGCTTAGACTTCACGCCGCCTGTCGAAGAGGCATGCGTCCCTTCGGTGAGGATAGAGGCCACCCCTGAAAGCTCCTCACCCTCTCAAGTGGTGGTTTCCTCCAGCAACGCAGCATCTGACGTCACACCCTCCGTAAGCAGCGACAGCGTTAGTTTTCCCACCCAGATCGAGAATCAAGCGGACTCCGTCACCATCCGAGTCACGCAGCCGTCGCCCGCTGCAGACGAGGTCTCTCAGAAACTCTCAGAGGCCAGTCTACAGGAGACGTGCCCAGAGGAGCGGCCCTCACAGCGTGAAGAAGGAGCTCAAGACCTCCGAGTGTTCGAGCTCAACTCGGACAGCGGCAAATCTACACCCTCCAATAACGGTTCGAGTACAGATGTGAGTGAAGACTGGGAGAAGGATTTTGATCTGGATATGACAGAAGAGGAGGTTCAGATGGCTTTGTCTAAAATGGACGCAACAGAAGAGTTGGAAGATGAGGACTGGGAGAACTGGGAGTGAGAATCTGGTGGAGGGAATTTTGACCCGATATCGACATGAGACGTTGCTCTTCCCAAAGTGAACCatgcttaatataatatatatagactCCTAGTCTACGGCCACACCTGCTCATTCGACCAGCCCAGTGAGCAGGTCACCTCCTGCCGATCACATTTACACGCTAGCTAAACACATGTCCACCGAGCAGTGATCTGAAGTGGGAAGAGGTGATCTGTTCTCCTTCCGGCTGTCCTAAAACATGACCTGAAACACTAAGACTGATCAGAGAAAGCATGTATCGGTTAATGAGGAGAGGTCATCATTTGTACCTGCCGTATGTACATTAATGTTATTCTTCTTTGGAGATTTCAGTGGGAGAATGCAAATTAACTGCCGGGGCTCCCGATTAGCTGTAATCTATTAAGATGTTCATCATTCTTACAGGATTAGAAAGCAATCCTTCACATGAAAAATATGTGTAagttatggtttttttttttcttttcgcaTTATAGGCTTCTTTATTTAGCTTCTCTTGAAACGCTAACACCTTTAATCTTATGCAAGTTATTCTAGCATTGAGAATGGATATGGAGGATGCTTCATTCATTCTGCTGATGCTCCATGGCCTTGTTCAGTGTTGTgtggaatggaaaaaaaaaaaaaaagtgctttcacTAAATACACCTGTTGTTCCAGTGCTGTCA
>XM_043255691.1
TGAACGCGgtgtttataaatattgttttgacgCGCTGGTGAGGTCAGAGTTCAGGCCATACCGATGTCGTCATGCGCTGAAGATGGCAGACGGGGAAGGAGGATGGTGGGGAGGCTGGCTGACACAGAGCTTCCAGGCCGTCAAAGACAAGTCAGCTGAGGCGTATGAGTTTATCAAACGGGACCTGACAGAATTCTCCAGTGTGGTCCAACATGACACGGCATGCTCCGTTGTTGCAACAGCGAATGCCATTAAGAGCAAACTGGCAGTTGAAAGTTCAACAGAGGCCACTGAAAAGGTGAAGAAGGGCCTTTCGAATATTTTGGGGGTGATCACAGACACTTTGGCCCCTCCCCCAGACAAGACCATCGACTGTGACGTCATCACGCTGGTAGCCACTCCGGCAGGTACAACAGAGGTGTACGACAGCGGCAAGGCTCGACTCTACAGTCTTCAAGCAGATCCCGCTACATACTGCAATGAGCCTGATGGCCCTCCGCAGCAGTTCGATACCTGGTTGTCCGGTTTCACACTGGAAGAGAGGAAAGCCGAGATCTCTGAACTGCTGGTCAACAGCCCCGCCATAAGAGCTCTTTATACTAAAATGGAGGAGGCAAGGAGAGTAGCGCTGAAGCAGAGAGCAGAGCAGACGGATCATTCTGAGAGTCTTGGTtgggaagaagaggaagaagaaggTGAGTTTCTCGGGGCCACGTCTTCATCTCGCTTAGACTTCACGCCGCCTGTCGAAGAGGCATGCGTCCCTTCGGTGAGGATAGAGGCCACCCCTGAAAGCTCCTCACCCTCTCAAGTGGTGGTTTCCTCCAGCAACGCAGCATCTGACGTCACACCCTCCGTAAGCAGCGACAGCGTTAGTTTTCCCACCCAGATCGAGAATCAAGCGGACTCCGTCACCATCCGAGTCACGCAGCCGTCGCCCGCTGCAGACGAGGTCTCTCAGAAACTCTCAGAGGCCAGTCTACAGGAGACGTGCCCAGAGGAGCGGCCCTCACAGCGTGAAGAAGGAGCTCAAGACCTCCGAGTGTTCGAGCTCAACTCGGACAGCGGCAAATCTACACCCTCCAATAACGGCAAGAAGGGTTCGAGTACAGATGTGAGTGAAGACTGGGAGAAGGATTTTGATCTGGATATGACAGAAGAGGAGGTTCAGATGGCTTTGTCTAAAATGGACGCAACAGAAGAGTTGGAAGATGAGGACTGGGAGAACTGGGAGTGAGAATCTGGTGGAGGGAATTTTGACCCGATATCGACATGAGACGTTGCTCTTCCCAAAGTGAACCatgcttaatataatatatatagactCCTAGTCTACGGCCACACCTGCTCATTCGACCAGCCCAGTGAGCAGGTCACCTCCTGCCGATCACATTTACACGCTAGCTAAACACATGTCCACCGAGCAGTGATCTGAAGTGGGAAGAGGTGATCTGTTCTCCTTCCGGCTGTCCTAAAACATGACCTGAAACACTAAGACTGATCAGAGAAAGCATGTATCGGTTAATGAGGAGAGGTCATCATTTGTACCTGCCGTATGTACATTAATGTTATTCTTCTTTGGAGATTTCAGTGGGAGAATGCAAATTAACTGCCGGGGCTCCCGATTAGCTGTAATCTATTAAGATGTTCATCATTCTTACAGGATTAGAAAGCAATCCTTCACATGAAAAATATGTGTAagttatggtttttttttttcttttcgcaTTATAGGCTTCTTTATTTAGCTTCTCTTGAAACGCTAACACCTTTAATCTTATGCAAGTTATTCTAGCATTGAGAATGGATATGGAGGATGCTTCATTCATTCTGCTGATGCTCCATGGCCTTGTTCAGTGTTGTgtggaatggaaaaaaaaaaaaaaagtgctttcacTAAATACACCTGTTGTTCCAGTGCTGTCA

Function

symbol description
bsdc1 Orthologous to human BSDC1 (BSD domain containing 1).

NR:

description
BSD domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255689.1 True 1995 mRNA 0.49 11 18119711 18126476
XM_043255690.1 False 1986 mRNA 0.49 11 18119711 18126476
XM_043255691.1 False 1926 mRNA 0.49 10 18119711 18126476

Neighbor

gene id symbol gene type direction distance location
olig4 olig4,LOC107597691,LOC107679159,LOC107735633,LOC107734277,LOC107655687,LOC107585473 coding upstream 6233 18083502 ~ 18113478 (+)
LOC122356940 LOC107734282,LOC107734283,LOC107597647,LOC107575482,LOC107679140 coding upstream 46610 18045897 ~ 18073101 (+)
LOC122356284 s100pbp coding upstream 76528 18037537 ~ 18043183 (+)
ldlrap1b ldlrap1b,LOC107667965,LOC107597650,LOC107561785,LOC107724600,LOC107734307 coding upstream 82847 17996931 ~ 18036864 (+)
maco1b tmem57b,LOC107734295,LOC107561778,LOC107679154 coding upstream 125573 17980379 ~ 17994138 (+)
LOC122356837 LOC107597643,LOC107679211,LOC107724630,LOC107679207 coding downstream 133721 18260197 ~ 18261280 (+)
LOC122356838 LOC107597643,LOC107679211,LOC107724630 coding downstream 138151 18264627 ~ 18267834 (+)
LOC122356945 marcksl1a,LOC107597644,LOC107679202,LOC107734268,LOC107724621,LOC107655702,LOC107585455 coding downstream 241838 18368314 ~ 18371353 (+)
tmem63ba LOC107679181,LOC107733349,LOC107655531 coding downstream 617530 18744006 ~ 18771823 (+)
LOC122356089 LOC107724591,LOC107679149,LOC107655560,LOC107733355,LOC571446 coding downstream 646711 18773187 ~ 18776934 (+)
G94637 NA non-coding upstream 229810 17889654 ~ 17889901 (+)
G94543 NA non-coding upstream 874742 17212947 ~ 17244969 (+)
G94501 NA non-coding upstream 1089636 17021864 ~ 17030075 (+)
G94484 NA non-coding upstream 1181057 16926914 ~ 16938654 (+)
G94481 NA non-coding upstream 1194574 16886084 ~ 16925137 (+)
G94741 NA non-coding downstream 35501 18161977 ~ 18162280 (+)
LOC122356621 NA non-coding downstream 136832 18263308 ~ 18264596 (+)
G94750 NA non-coding downstream 137048 18263524 ~ 18270603 (+)
G94753 NA non-coding downstream 247087 18373563 ~ 18375173 (+)
G94785 NA non-coding downstream 393164 18519640 ~ 18519911 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other upstream 543773 17560296 ~ 17575938 (+)
G94378 capn1a,LOC107549131,LOC107676389,LOC107586085,LOC107679188,LOC107734280 other upstream 1514328 16597781 ~ 16605383 (+)
G94324 NA other upstream 1600885 16515827 ~ 16518826 (+)
nkx1.2la nkx1-2,nkx1.2la,LOC107601042,LOC107702751,LOC107665606,LOC107586110,LOC107719237 other upstream 2214802 15901540 ~ 15904909 (+)
G94186 st3gal7,LOC107665608,LOC107601047,LOC107747259 other upstream 2242289 15873444 ~ 15877422 (+)
G94760 NA other downstream 312697 18439173 ~ 18439583 (+)
G94789 LOC107563058 other downstream 410416 18536892 ~ 18537443 (+)
G94776 NA other downstream 418876 18545352 ~ 18631718 (+)
lhcgr lhcgr,LOC107688869,LOC107679161,LOC107733338 other downstream 1029806 19156282 ~ 19170027 (+)
foxn2a foxn2,LOC107588458,LOC107679166,LOC107725033,LOC107667132,LOC107572676,LOC107733332,LOC108441706 other downstream 1429122 19555598 ~ 19590284 (+)

Expression


Co-expression Network