irf2bp2a (irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236)


Basic Information

Item Value
gene id irf2bp2a
gene name irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20101059 ~ 20103872 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255693.1
AGCGCGCATGCGCCGGAGGGGGAGTTCTATCGAAGAATCAAGTAAATAGAATCGGAGCGTCCGTGACGTCACCGCTCCACATTGAGCTCCGGTCTGGACGCGGTagtagtgagagagagagcgcgagcgAGCGAGCGTCGTAGTAGTAAAGCGCACACTACTATGAAGTTCTGTTCGTAACTCAATTATTACTCGAGAGGAGCCTACCTCGTTTTCCCGCGAACATTTCCGACAGGATTGCGCTGCACTTCGGAGGGTTTTCCGCCTAAACGAGCGATGTCGTCCGCGGCGGTTCACGGTTCGAGGAGGCAGTCGTGTTATTTGTGCGACCTGCCCCGCATGCCGTGGGCTATGATCTGGGATTTTACCGAGCCCGTTTGCAGGGGATGCGTGAACTACGAAGGAGCGGACAGGATCGAGTTTGTCATTGAAACCGCGCGGCAGCTCAAAAGAACCCATGGATTTCAGGACGGCAGACCGGCGACGAAACCGTTGTCGGGGAAGGAGATCCAGGCGTTGAATCACGCGTCTGGGGAGCCGGTTTCGCGTCCGCCTCAGCCCTTGGACCGTTACCCGCTGTCCTCGGAGCGTCCTCCCAGACTGGGACCGGAATACCAGTCCGCGCGGCAGGCGAACGGCATCCCGGTCCCGAACGGATTCTCGAAACCGGACGATCCTCCGGAGCTCAACCGACAGAGCCCGAACCCGCGCAGGACTAGCGGCGTGCCGCCCAATTTAGTGCCTCTGGTGAACGGCAGCATGGTTCACGCGATCAACGGCAGACCCGGTCTCGGCCCCGCCGACCTCGGCGGGAACAAGCGGCCGGCCTCGGTCTCCAGCACCGAGCACGACAAGGACAAGCTCCGACCGGACAGCCTGACGCCGGAGATCAGCGACGGCCACAAAACTCGCGCGGACGAGTGGATCAAGAGCAAAGCGTCCCGGGATTTAATGGCGCTCAACGCGTACGACCCCAGATTTAAGAAGGAGCACATGCAGCAGAGAGTCATGTACGAGCCAAACCCTCCCGCGTCCAAATCAGATCGAGGCAAACATCCCAAGAATCTGAAGAGAAAAGCCTCGCCTGAGCCGGACGGGGAGGGCGGCACCGCCGCCAAGATTAACGGAGACGGACAGCAGTGGCTCCCGGCGGGAGACGGATTGAAGATGCCCCCGGTGCCGCCGCCCAGCTTCGCCTCCCCGCCCTCCACGATATCCCCTCACCCGCGCACCACCCCGCCGGAGGCCTCCGCCCAGAACGGAAGCTCGCCCATCGCGGCGCTCATCCTGGCGGCGGACAACGCCGGCGGGAACAGCTCGCCCAAGGACGCCAACCAGGTGCACTCGACCACGCGCAGGAACAGCAGCAGCCCGCTTTCTCCCAACCAGCGGCGGCTGGCGCAGGGCCCCGTGACGCCTCACGTCCCCGGCATCCCGGACTCCTCGGTTCCCAGCAGCATCCCGCTGTGCTGCACGCTTTGCCACGAGAGGCTGGAGGACACGCACTTCGTGCAGTGCCCTTCGGTGCAGTCTCACAAGTTCTGCTTCCCTTGCTCCCGGGAGAGCATCAAACTGCAGGCCGCGAACGGAGAAGTGTACTGTCCGAGCGGCGAGAAATGCCCTCTGGTGGGCTCCAACGTACCCTGGGCTTTCATGCAAGGCGAAATAGCCACCATCTTGGGAGGAgaagtaaaaaaagagagagacacttGATTGCGAAAATATTCTggtctatataaatatataaatatgaatatccCATGCATACCATCCAGACAGAAACTAACGGACTTGTATATAATGGACATGAGGGACATGCATACTTGGTAAACAttgctgtacatttttttgattttttgaatacattgtgtttctatattttttgaAGATAAAAAGGTATGTACTTATTATAACGGACTACGTTCTTCTTTGTCGATGTTTAACGATTTTCTTGATGTACTTTTAGGTATGGTGGCAGTTCCTGTTAAACGTAGAATGTGACTAATGCAACTCTACGAGCACTTGGCAAAACATTGGAAAACGCTTCTAGCTGTACTTGTATGCACTTGTTTAAAATTTgccaaatacattttctgatcTTGTATTAA

Function

symbol description
irf2bp2a Predicted to enable transcription corepressor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including midbrain neural keel; musculature system; nervous system; periderm; and presumptive diencephalon. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human IRF2BP2 (interferon regulatory factor 2 binding protein 2).

NR:

description
PREDICTED: interferon regulatory factor 2-binding protein 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22383 IRF2BP; interferon regulatory factor 2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255693.1 True 2108 mRNA 0.56 2 20101059 20103872

Neighbor

gene id symbol gene type direction distance location
LOC122356780 NA coding downstream 64586 20025669 ~ 20036473 (-)
LOC122356781 NA coding downstream 75798 19996649 ~ 20025261 (-)
map10 NA coding downstream 412126 19685919 ~ 19688933 (-)
ntpcr ntpcr,LOC107557727 coding downstream 415726 19680245 ~ 19685333 (-)
fbxo11a fbxo11a,LOC107725019,LOC107679165,LOC107733352,LOC107588452,LOC108413220,LOC108430631,LOC107667079 coding downstream 569056 19505862 ~ 19532003 (-)
tomm20a tomm20a,LOC107690811,LOC107728308,LOC107667141,LOC108247505 coding upstream 38677 20142549 ~ 20145468 (-)
LOC122357145 NA coding upstream 39724 20143596 ~ 20143727 (-)
arid4b arid4b,LOC107690809,LOC107557720,LOC107667027,LOC107728306 coding upstream 46586 20150458 ~ 20218900 (-)
b3galnt2 b3galnt2,LOC107730378,LOC107667096,LOC107728324 coding upstream 141615 20245487 ~ 20264253 (-)
lyst lyst,LOC107691204,LOC107728318,LOC107689764,LOC107569426 coding upstream 171905 20275777 ~ 20345682 (-)
G95469 NA non-coding downstream 25122 20075371 ~ 20075937 (-)
G95190 NA non-coding downstream 254525 19846301 ~ 19846534 (-)
LOC122356282 NA non-coding downstream 265406 19818053 ~ 19835653 (-)
G95147 NA non-coding downstream 430728 19669709 ~ 19670331 (-)
G95110 NA non-coding downstream 507683 19591872 ~ 19593376 (-)
LOC122356209 NA non-coding upstream 4319 20108191 ~ 20140958 (-)
G95506 NA non-coding upstream 132806 20236678 ~ 20238227 (-)
G95519 NA non-coding upstream 410901 20514773 ~ 20515311 (-)
G95524 NA non-coding upstream 414728 20518600 ~ 20520093 (-)
G95537 NA non-coding upstream 516175 20620047 ~ 20620719 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other downstream 179390 19909195 ~ 19921669 (-)
disc1 LOC107666898,LOC107730373 other downstream 193997 19862530 ~ 19907062 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other downstream 739018 19286030 ~ 19362041 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other downstream 1125535 18957703 ~ 18975524 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other downstream 1428166 18545571 ~ 18672893 (-)
LOC122356211 gng4 other upstream 160854 20264726 ~ 20275386 (-)
G95520 NA other upstream 376053 20479925 ~ 20486704 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other upstream 384913 20488785 ~ 20492076 (-)
G95511 NA other upstream 389770 20493642 ~ 20496864 (-)
G95526 NA other upstream 466166 20570038 ~ 20571562 (-)

Expression


Co-expression Network