capn2a (capn2a,LOC107679193,LOC107549147,LOC107586086,LOC107676365,LOC107734257,LOC107197131,LOC108426130)


Basic Information

Item Value
gene id capn2a
gene name capn2a,LOC107679193,LOC107549147,LOC107586086,LOC107676365,LOC107734257,LOC107197131,LOC108426130
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16607735 ~ 16616506 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255701.1
ACGCTTCCTGTGCACGGGTTGAAAAAGACGTTCTGCTTCTTTTCCGCTGTGCTTCTGCTGCATTCCGCTTTCAAAGGCAAAAAGAGCGTAGAACGCGTTCCGTGCGTGTGTGAACGGCCCCAAAATTACAGGCTTAGGACCACGCCTGTCCTGGAAGGAGGAGTGGGTCGGGGCGTAAGCGTAGAACTTTTTCACTGTCGCACTTTTCAACAGCTGCAAAGGAGCGCGGGGCgaaaaacaaaagtttgaaAATGTCCGGCGTGGCATCCACACTCGCCAAGAAGAGGGCCGAGGCCGCTGGCTTTGGAACGAACGCCAATGCGGTGAAGTACCTGAACCAGAACTTCGAGGGTCTGAGGAGCGAGTGTCTGAGCCGCGGCCAGCTGTTCTGCGACCCTACCTTCCCGGCCGTTCCCGAGTCTCTGGGCTTCAACGAGCTCGGGCCACGATCGGCGAAAACCACAGGCGTTGTGTGGAAAAGACCTGGGGAGTTGACCTCCAGTCCCGAGTTTATTGTTGGAGGGGCAACAAGAACAGATATTTGCCAAGGAGGTTTAGGTGATTGCTGGCTCCTAGCAGCCATCGCTTCCCTAACCCTCAATGAAGACGTTTTGGCTCGCGTCGTTCCGTCCAACCAGGGCTTTGGGCAAGACTATGCTGGAATTTTCCACTTTCAGTTGTGGCAGTTTGGGGAATGGGTGGATGTGGTGGTGGATGATCGATTGCCCACTCGAGATGGAGAACTGCTGTTTGTTCATTCAGCCACAGGCTCAGAGTTCTGGAGCGCACTGCTGGAGAAGGCCTATGCTAAAGTGAATGGGTGTTATGAAGCTCTGTCTGGAGGTTCCACCACAGAAGGCTTTGAGGATTTCACCGGTGGAATTGCAGAAATATACGAATTGAAACAAGCTCCTTCCAACATGTTCCAAATCATCAGGAAGGCCCTGGATTCTGGATCACTTTTGGGATGCTCCATCGATATCACCAGTCAAGCAGACTCAGAGGCCATCACGTATCAGAAGCTTGTGAAAGGACATGCCTACTCTCTTACTGGAGCAATCGAGGTTAATTACAGAGGCCGGAAAGAGAAGCTGGTCAGAGTCCGTAATCCTTGGGGCCAGGTAGAATGGACAGGGGCCTGGAGTGACAACTCTTCTGAATGGAATGCCGTCGATCCGTCCGAACGCGAGAATGTGAAGTCAGAAGATGGAGAGTTCTGGATGTCATTCTCAGAGTTTGCGAGGCAGTATTCCCGCATAGAGATCTGCACTCTGACCCCAGACACGCTGACATCTGACTCCGTCAAACATTGGAGCGCGTGTAAGTTCGATGGCACCTGGAGACGAGGCTCCACGGCTGGTGGATGCAGGAACCATCCATACACCTTCTGGATGAATCCTCAGTTTAAAATCAAACTGgaagaggaagatgatgatCCTGATGATAATGAAGTGGGCTGCAGTGTGGTGATTGGCTTGATTCAGAAGAACCGGCGTAAGTTGAGGAAGTCTGGAGAGGACATGCACACTATTGGCTACGCCATCTATGAGGTGCCTTCTCAGTTCCACGGGCAAAAGGATGTTCATCTGGATAAGAATTATTTCCTCACCCACGCACAAAAAGCTCGATCTGAGACTTTTATCAACCTTAGAGAAGTCAGCACCCGCTTCAAACTTCCTCCTGGAGAATATCTCATCGTCCCTTCCACATTCGAACCGCACAAGAACGGAGACTTCTGTGTGCGCGTGTTCTCCGAGAAACAGTCTGAGATGCAAAAATGTGATGACCCTATAGAGGCAAACATAGAAGATGAGACGGTGTCTGAAGATGAGGTTGATGCTGGTTTTAGGGGACTGTTCACTAAACTAGCAGGAGATGACATGGAGATCTCTGCCACGGAGCTGAGAACAATTTTCAACAAAATAGTTGCAAAAAGAACAGATATTAAAACAGATGGTTTCAGTTTGGATACATGTAGGGTCATGGTGAACCTCATGGATGAAAGTGGCAATGGTAAACTAGGGTTAGCTGAGTTTGCCACTCTTTGGAAGAAAATTCAAAAGTATCTGGTCATTTATAAGAAGAATGACATGGATGGGTCCGGCTGTATGAGTACACCAGAGATGCGAATGGCTTTAAAGGAAACAGGATTCTCTCTGAATGACTCCATTCATCAGTGTCTGGCGGCACGCTATGGAGACGCAGACATGAAGATCGACTTTGATAACTTCGTGTCGTGTGTGATGCGCCTGGAGATGATGTTCAAAGTCTTCAAAAGGCTTGACGTAGACAGCAGTGGGTTCATTGAGCTGGACTTCTTCCAGtggCTGACGTTTGCTATGGTTTAAAGGCCCAGAGGATTATTATgaatagtatttttgttttgctagtTAACTTACACCAGCGATTCTCAGTCCTAGTCCTTGCGCCCCAccgctctgcacattttgtatgtttctctTGTTTGTTCCATTCGAAACACATGCCATGCGAAGTGGAAATCACTGGATATGCTCTGTGCTTTAACAAAGAGACACACAAAATATGCGCGAGGTCTGGAATCGAGAACCGCTGACTTACACAGAAGACCACCATATAGCGAAATGCTTAACGAGTATAGCGGACCTCCTGGGATTTGTAAATGTGTCCGTTGTACTTTGCAGTAGATATACAAGCATAGTTGCCTGTTGTTTTATTCGCAATGCACTTTCCTCTTACTGCAGTGCTTGCAAGGcatcattgttttgtttttttgttgctgctCCAAACTGTGTGGCTTGTTGATGACAATTGTGCAGTTACTTTAAGTGATCAGACATACGACTCACACCTGGTCATATAGATTTAAAGAGCAATCAAAGATATATAGCCACCTTTTTATTCCTGTAAGTCAACACTTTTGGCCAGTAAGCAGCCACATAGCAATGCTCTGGCAATAGCATcttgtgtctatatatatatatatatatatatatatatatatatatatatata

Function

symbol description
capn2a Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in brain; embryonic structure; pectoral fin; and retina. Orthologous to human CAPN2 (calpain 2).

NR:

description
PREDICTED: calpain-2 catalytic subunit-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255701.1 True 2994 mRNA 0.47 21 16607735 16616506

Neighbor

gene id symbol gene type direction distance location
capn1a capn1a,LOC107679188,LOC107676389,LOC107734280,LOC107586085,LOC107549131 coding downstream 813 16594967 ~ 16606922 (-)
lrrfip2 lrrfip2,LOC107679173,LOC107676384,LOC107734278,LOC107586082,LOC107724585 coding downstream 15663 16571548 ~ 16592072 (-)
fam83ha NA coding downstream 49759 16547186 ~ 16557976 (-)
LOC122356270 LOC107549152,LOC107747275 coding downstream 61243 16543081 ~ 16546492 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276,LOC106604898 coding downstream 69254 16519536 ~ 16538481 (-)
LOC122356705 NA coding upstream 163088 16779594 ~ 16785628 (-)
vsir LOC107679168,LOC107549146,LOC107724606,LOC107676381,LOC107568522 coding upstream 179049 16795555 ~ 16805141 (-)
LOC122356703 eif3s6ip,eif3l,LOC107679167,LOC107676390 coding upstream 210503 16827009 ~ 16832240 (-)
ablim1a ablim1a,LOC107676391,LOC107724609 coding upstream 307431 16923937 ~ 16962479 (-)
fhip2a LOC107568115,LOC107679198,LOC107724610,LOC107734297,LOC107676387,LOC107575459 coding upstream 347789 16964295 ~ 16975489 (-)
G94455 mrpl14,LOC107676385,LOC107679189,LOC107734281 non-coding downstream 13004 16593425 ~ 16594731 (-)
G94453 mlh1 non-coding downstream 38485 16567915 ~ 16569250 (-)
G94425 NA non-coding downstream 88909 16515857 ~ 16518826 (-)
G94416 opn3,LOC107665579,LOC107747290,LOC107549142,LOC107549136,LOC107586115 non-coding downstream 175305 16430674 ~ 16432430 (-)
G94414 opn3,LOC107665579,LOC107549142,LOC107747290,LOC107719228 non-coding downstream 177442 16429841 ~ 16430293 (-)
G94511 NA non-coding upstream 368000 16984506 ~ 17015657 (-)
G94516 NA non-coding upstream 405597 17022103 ~ 17030063 (-)
LOC122356952 NA non-coding upstream 1015743 17632249 ~ 17672523 (-)
G94608 NA non-coding upstream 1105222 17721728 ~ 17722300 (-)
G94619 NA non-coding upstream 1174378 17790884 ~ 17791890 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 181200 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 315356 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 438531 16009687 ~ 16169204 (-)
G94216 NA other downstream 722513 15877527 ~ 15885222 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other downstream 814195 15774777 ~ 15793540 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other upstream 758244 17374750 ~ 17387006 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 1929065 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 2341197 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 2669524 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 3246024 19862530 ~ 19907062 (-)

Expression


Co-expression Network