vsir (LOC107679168,LOC107549146,LOC107724606,LOC107676381,LOC107568522)


Basic Information

Item Value
gene id vsir
gene name LOC107679168,LOC107549146,LOC107724606,LOC107676381,LOC107568522
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16795555 ~ 16805141 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255703.1
TTCACTGCTTTACTTCTGATATGAATCTGGGAAGTTACGTGCAGTAACAGCACTTGAGTTCACAAAACACGGGAATAAGAGGAGGACTGCACAAGATCTTCTGTCACCACAACTGTGGAGAAGGACCTTGGGAATAAGCCGAGTACATTTCTACAGTTTCGTGAACGTCTGCAGGAGATCAGGACTGATGGATGCATTTTGCGCTCTGTTGCTCTGCTTCCATCTCTTAACCGCGTTTCAAGTGAGCGGCGAGCGTCACTCTTTCAGTGTCTCTGTGCCACATCGGGTCTACGAGTGTCCTGAAGGGGCCAATGTCACGATGATGTGTCTTCAGTCTGGAGACAAGGTTCATTCGGGGGACAAGATGTGGAACACCTGGCTCTTCACACCTCGCTCGCAGGAGCACTGCCACAAGGGCGTGCATCCTCGCGGGTCCGGTCACTCCAACAACGCGCTGGGAGTGGAATACACGGGCAAAGGCAGCAAGTCTTTCTCCATCTTTTTGCAGAACATCAGCTACAGGGACCAGGGCAAATACTGCTGTCTGCTTCTGGAAGTTAACAAGCAAAAGGTGGAGCAGGAGGCCCGGGAATTCATCTACCTGAATGTAGTGCCATCGATGGGACATGCTCACAACAGCAGTCTGAAGTGTTCGGACTGGTCTCACGGCCCTTCAGATGactCGGTGGCTGAAGGTCTGGCTATCGCTGCCTGTGTCGCTTTCATTCTGTGCCTCCCGCTCATACTGATGCTGGTTtacagacagagacaaacagTAGAGCGACACAGAcGTGCACACGAGCTGGTGCGTATGGACAGTGAAGCACAGGCTCATGAGAACCCAGTGTTCTTGGGAGATTCTCCACAGCCTAAAGTCCGGACTGTATCCCAAATAATGAGGCAGTCCTCTGAAACAGGACGGCACCTCCTCTCGGATCCCGGAACTCCGTTCTCTCCAATCATACAAGGAGAACTGTTCTTCCCAGCACAGGgaactATCCCTGAATCTCCCAACTTAATGGACTAAAACGTGTCACGCTCTCCCCAGGAGCATCGAGTGCTTCTTCCATCTCCTCCACATCATCATGTCTCTTCCTGTCCTCTGCAAAGATGATGAGGACGGACCCACCCCAAAAAACGAGAACTGAACTCTCCGCTATCACGGTGGGACCCCTTATCTGGTTGGCgtctgtgtctgtctgctgACTTAAATGGGTTTCCCGAGAAGGAAAATCGGAACGTTTCACAAGTTAGGGTATCAGGGAGAACACGATTTCATGAAGAGGAGCCAAAGATTTTCTTTCGTGGCCTTTGAGTTGAACATTTTTCAGCTAAGCAGTTTGCACACATTCCTGTTCACCACGTGCTTCGTGTCAGTCATACTGTGGTTTCATTTGCACTTAAAAGACCGTTTTACTCTCTTTCATTTTTCTATCCCCATCCTCACCTCCGTTCCCAATGAAACGGTCACTTCATCCGCTTACTTCTAGGGATGTATTAATACCTCATTTTTCACTCCTCTTTTACCCATCTCTATACTGATTTTCCTTCACACTCAATAAGGATGTTTGTGCCAAAGTACTCAGTTGTCACTTTATCACTGAAATGGTGCCAGTGCTGGTCCCAAATGAGGTTCTCGGCTGGAATATCTgcaattttgctttaaaatgctaaatagttGATAATACAGTGTCTTTATGTAACAGGCCCAGATTGAGGCCAGCACCGGTACGTTTGAGTGGAAAAGGGATGTTCTCAGTACACTCACCGTCAGACCTGCTGAGAAACAATGGGCTATTAAAAACCCTTGTGTGGTTAGTGTGGTGCTTTTATGATGTATGTAGCTTAAAAATGAGTTCTGCCAGAATGAATGCAGAATTTTTTGTGGTAAATGTCTTACGTGTCCCATGTCACTTGCGGCTTTAAGGGGCCAGAGGGCTCATAAAACAagattttctatatattttgtattgactttttaattgtgtgtgtttctattattcaaaatacaaaaaagcaaaaagcttTTAATCCACTGCCATAAAGAGCCACTTCAATCCACTGCCAAAACTTTGCTTTGTGTATGAATGGATAGTTTATAGGTGAATGACTGGAAATATTGGAATTATGTTGATAATTATGAACctgtttgtacatttaaaagttgCTCGTGTGCCTGTACAAAGTCAATACCGTATATGTAGCTCTAGTGGCAACGCTGTGACAAAATCAATTGCttatattttgtttcataaaaatacaaataaataaaaaaagttctgTTGAGA

Function

NR:

description
V-type immunoglobulin domain-containing suppressor of T-cell activation

GO: NA

KEGG:

id description
K23268 VSIR, VISTA; V-type immunoglobulin domain-containing suppressor of T-cell activation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255703.1 True 2288 mRNA 0.45 7 16795555 16805141

Neighbor

gene id symbol gene type direction distance location
LOC122356705 NA coding downstream 9927 16779594 ~ 16785628 (-)
capn2a capn2a,LOC107679193,LOC107549147,LOC107586086,LOC107676365,LOC107734257,LOC107197131,LOC108426130 coding downstream 179049 16607735 ~ 16616506 (-)
capn1a capn1a,LOC107679188,LOC107676389,LOC107734280,LOC107586085,LOC107549131 coding downstream 188633 16594967 ~ 16606922 (-)
lrrfip2 lrrfip2,LOC107679173,LOC107676384,LOC107734278,LOC107586082,LOC107724585 coding downstream 203483 16571548 ~ 16592072 (-)
fam83ha NA coding downstream 237579 16547186 ~ 16557976 (-)
LOC122356703 eif3s6ip,eif3l,LOC107679167,LOC107676390 coding upstream 21868 16827009 ~ 16832240 (-)
ablim1a ablim1a,LOC107676391,LOC107724609 coding upstream 118796 16923937 ~ 16962479 (-)
fhip2a LOC107568115,LOC107679198,LOC107724610,LOC107734297,LOC107676387,LOC107575459 coding upstream 159154 16964295 ~ 16975489 (-)
LOC122356833 mdga1,LOC107679144,LOC107676363,LOC107561756 coding upstream 407792 17212933 ~ 17365849 (-)
LOC122356215 marveld1,LOC107564681,LOC107664302,LOC107736855,LOC107665576 coding upstream 742273 17547414 ~ 17548604 (-)
G94455 mrpl14,LOC107676385,LOC107679189,LOC107734281 non-coding downstream 200824 16593425 ~ 16594731 (-)
G94453 mlh1 non-coding downstream 226305 16567915 ~ 16569250 (-)
G94425 NA non-coding downstream 276729 16515857 ~ 16518826 (-)
G94416 opn3,LOC107665579,LOC107747290,LOC107549142,LOC107549136,LOC107586115 non-coding downstream 363125 16430674 ~ 16432430 (-)
G94414 opn3,LOC107665579,LOC107549142,LOC107747290,LOC107719228 non-coding downstream 365262 16429841 ~ 16430293 (-)
G94511 NA non-coding upstream 179365 16984506 ~ 17015657 (-)
G94516 NA non-coding upstream 216962 17022103 ~ 17030063 (-)
LOC122356952 NA non-coding upstream 827108 17632249 ~ 17672523 (-)
G94608 NA non-coding upstream 916587 17721728 ~ 17722300 (-)
G94619 NA non-coding upstream 985743 17790884 ~ 17791890 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 369020 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 503176 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 626351 16009687 ~ 16169204 (-)
G94216 NA other downstream 910333 15877527 ~ 15885222 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other downstream 1002015 15774777 ~ 15793540 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other upstream 569609 17374750 ~ 17387006 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 1740430 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 2152562 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 2480889 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 3057389 19862530 ~ 19907062 (-)

Expression


Co-expression Network