trmt61a (trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545,LOC107708432)


Basic Information

Item Value
gene id trmt61a
gene name trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545,LOC107708432
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 110945 ~ 121481 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255709.1
CGCGTTCACATGCCTTTGAGTCCATCCGCATGAGGTGAAGAGCCGCTCTGGAGGGCGCGTCGACGCGTATCTCGTCGCGGGGACTGGCGCACGCACGTGCTGTACTGTCTTCCAGCTCCTTCCCAAACATAAAACTACATCCTCGCTGAAGCAGCGAGTGTTTAATCCTCCAAGGCTGCTCTCTTCATTAAAGCTGTGCCTCATGAGTTTTGTGGAGTACTCCGAGATCATCCAAGAAGGGGATGTCGTCATTATCTTCCTGGGCCACGAGTCCATGATGCCCATCAAAGTTCAGTCGGGAGCGCAGACGCAGACCCGCTACGGGGTCATCCGGCACTCCAGCGACCTGATCGGACAGCGGTTTGGTTCCAGAGTGACCTGCAGTAAGGGCGGTTGGGTTTACGTGCTTCACCCCACGCCAGAGCTGTGGACGGTCAACCTTCCCCATCGAACGCAGATCCTCTACACCACAGACATCGCCAACATCACACTGATGCTGGAGCTCAAACCGGGCTCTGTCGTCTGCGAGTCAGGTACAGGCAGCGGCTCTCTGTCTCACTCGATCCTGCGGACCATCGCTCCCACCGGCCACCTGCATACGGTGGAGTTCCACGCTCAGCGAGCCGAGAAGGCCATGCAGGAGTTCAAGGAGCACAAAGTGTCTCACCTGGTTACTGTTAGAAACCAGGATGTGTGCAAGGACGGCTTTGGCATCACAGGAATAGCCGATGCTGTGTTTTTAGACATCCCCTCTCCGTGGGAGGCAATCACACATGCCAAGAGTGCCATGAAACGCAAAGGAGGCCGTCTCTGTTCCTTCTCGCCATGTATAGAGCAGGTCCAGAGGACGTGTGAGGCACTGCTGGACCGTGGCTTTGAGGAGATCTGCACACTGGAGGTTCTGCTCCGGGTGCATGATGTTCGTAGTGTCAATCTGCCCTTACCAGACTTCGGACCAGAGGAGGGCTCTCCGGATGTTAGTCAAGAGGAAATCCCAAACACCGGGAACACCTCTGTGATCTGCAGGACTGCCACACCTCCCAGAGAAATGGCAGGACACACCGGATACCTCACCTTTGCTACCAAACCACGCGACTAGAAGCGTAACGTAAGCTGATGGAGGCTCTTATAGAGTTTAAGTAATGcaaagtcatgtttttttttgtttgttttattttaaatgggcTTTTATACCAATATAACAGTTCATGCAGTTTAAAAACTCTGGTTCAGTACAGACTGATtcaatttatctttttatttgtatgctttttttttttaaataagtagaTTGTTTTGCTACAATAAATTATTGGAATGCAATAAAAACTCTgtagtttctttttcttgtgCTATTGATGTTGTTGCAACTTTGTGTGACTGTCAGCTGTCACGTTCGACCACTCAGGAAGCATGAAGAGAAATTTATGCTCTTCATGACGTATCTTCGTCACGATAAATTTGCCTGTTGACATCATGTAAAACTTTGTTTGGTGAAGTTCATTGTTTGCGTTCATTTATGTGATATCAGCAGTTTCTCACCACTGTTGCTCTCAATTCAAGGCTGTTACGGCCTGTTCTGGATCTGTTGTGTATGTTACTTTCTTGGAGGTGGAATGAAAGATACTAAAGAACTAGATGTGCCAACATCTGGTAAATGTTATATCTGAAACTATCTGCATATTCAAGAGTCCATAAAAGGCATTCCTTCTGCAATCTGATGTCTTCAGAGATGCTGTATAAAGTCTGTATAAActttagtctctctctctgtctctcgaaACATGGAGGTTATGAATCATAGTCAGAGATACAGTCATAAGATGTGTTTGCATGATTAGTATGATTTTCttgctatttaaaacaattgtatGTTAAACAGAAATGCTGCAGTGATAATGCGTTACATGGttgtcacatttaaaatcattagtaaaatgctaaataattgtACAAGAAAATTTAGGcatcacaacattataaaaatgactacTAATTTACTGCagattatattttgtttatattactttattttcagtaaattttttgtgtgttggcaaaagcaatttaaatgggaacagaataagaaaaagtaTGAATGCAAAAGTTTACATACTGAACATATTAAAGTtgtgaataatattt

Function

symbol description
trmt61a Predicted to enable methyltransferase activity. Predicted to contribute to tRNA (adenine-N1-)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; lens placode; midbrain; optic vesicle; and solid lens vesicle. Orthologous to human TRMT61A (tRNA methyltransferase 61A).

NR:

description
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0031515 tRNA (m1A) methyltransferase complex cellular_component
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity molecular_function

KEGG:

id description
K07442 TRM61, GCD14; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255709.1 True 2145 mRNA 0.44 4 110945 121481

Neighbor

gene id symbol gene type direction distance location
LOC122356894 LOC107698146,LOC107582494,LOC107721215,LOC107678583,LOC107708388 coding downstream 25673 147154 ~ 149377 (+)
mocos mocos,LOC107698156,LOC107582499,LOC107678503,LOC107708374 coding downstream 177552 299033 ~ 305339 (+)
anxa11a anxa11a,LOC107721228,LOC107708439,LOC107698157,LOC107582500,LOC107589536,LOC107678500 coding downstream 185242 306723 ~ 320043 (+)
LOC122356635 LOC107698159,LOC107747466 coding downstream 259482 380963 ~ 540430 (+)
LOC122356634 kcnma1a,kcnma1,LOC107582501 coding downstream 442338 563819 ~ 677599 (+)
G89504 LOC107698148 non-coding upstream 1280 108154 ~ 109665 (+)
G89496 NA non-coding upstream 5787 36978 ~ 105158 (+)
G89526 NA non-coding downstream 102568 224049 ~ 224290 (+)
G89527 NA non-coding downstream 103033 224514 ~ 224746 (+)
G89627 NA non-coding downstream 255876 377357 ~ 378829 (+)
G89630 NA non-coding downstream 258631 380112 ~ 380411 (+)
G89635 NA non-coding downstream 377781 499262 ~ 504906 (+)
klc1a klc1a,klc1,LOC107721224,LOC107698151,LOC107708436,LOC107678539 other downstream 28958 150439 ~ 183438 (+)
fignl1 fignl1,LOC107721231,LOC107698153,LOC107678605 other downstream 69316 190797 ~ 236893 (+)
dlg5a dlg5a,LOC107708441,LOC107698145,LOC107678499 other downstream 202250 323731 ~ 376571 (+)
G89631 LOC107698159,LOC107747466 other downstream 259483 380964 ~ 677601 (+)
comtd1 comtd1,LOC107690183,LOC107582505,LOC107747463,LOC107678519 other downstream 886787 1008268 ~ 1011247 (+)

Expression


Co-expression Network