polr1b (polr1b)


Basic Information

Item Value
gene id polr1b
gene name polr1b
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16292761 ~ 16302095 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255785.1
GCCTTGCGCTACTTCCGAGATCCCGTTGACAAACACACGTGTGCGCGCGCCCAGCAGCATGGATCTTAACAAGTGGTGCAATTTAAAGTCCGAACCGAGTTTAAAGCATTTGACAGAGACGGGGTTCGGTGTCCCGAAGGAAAAGCAGCACCTGCCCATGCAGGAGCTGGTGAAGGCGCACATTGAATCGTTTGATCAGGCAATTACTGATGGGTTATGTCGGATTGTGGAGGCCATTCCTCCTTTAGAGTTCATGTTCTTCGGAGACAGGATCAGTCTGTCGTTTGTGGAGGCCATCATTCACAGGCCAGCGGTTTCTAAAGGAGGTATCAGCAGAGACCTGCGGGTCTTCCCCGCTGAATGCAGAGGCAGGCGCTGCACGTACAGAGGGAGGCTAGTGGCAGACGTGAATTGGTCTCTTAATGGCGTTCCCAGAGGAATCATCAAACAGTCTCTGGGAAATGTGCCGATCATGGTCAAATCGAAACTCTGCAATCTTGATGGTCTCTCGCCCAAAGAACTCATCGAGCATCACGAAGAAGCCGAGGAAATGGGCGGCTATTTCATCGTTAACGGCATAGAGAAGGTGATTCGTCTTTTGATCATGCCGAGGAGGAACTATCCCATTGCTCTGACAAGACCAAAGTTTAAGAGCAGGGGACCGGGCTACACTCAGTACGCTATTTCAATGCGCTGTGTAAGAGAAGAACACACGGCTATTAATATGAATCTTCACTACCTGGACAATGGAACGGTGGTGGTCAATTTCATTTACAACAAACAGCTGTTCTTTCTTCCCTTGGGCTTTGCACTGAAGGCTTTAGTGGATTTCTCAGATTACCAGATCTACCAGGAGCTGATTAAAGGTTATGAGGAGAACTCTTTCTACAAAAGCTGTGTCTCAGAAATGCTGCGTATGGTCATGGACCAGGGCTGCATAACTAAATCCAAGGTGCTTAATTACCTGGGCGAGCGTTTCCGGGTCAAACTCAGCCTCCCAGAATGGTACACCCACGAGCAGTGCGCTCACTTCTTGTTGAATGAATGCCTGTGTATTCACCTGAAGTCAGATGTGGAGAAGTTCTACATGTTGTCTCTGATGACGCGGAAGCTCTTCAGATTTGCCAAGCAGGAGTGTATGGAAGAAAACCCTGACAGTCTGATGTTCCAAGAGGTTCTGACTCCAGGCCAGCTCTACCTCATGTTCCTAAAAGAGAAAATGGCAGGTTGGTTGGTTTCGGTCAAACTGTCCATGGAGAAGAAGATTAAGAGACTCCAGAAAATGGGATCACTGAATACAGATGCTATGACTAAATTCTTCAACATGGGTACAGATATCACCAGAGCTTTTGAGTATCTGTTAGCCACTGGAAACCTCCAGTCCAAGACGGGTCTGGGAATGCTGCAGGCCAACGGGCTGTGTGTCGTGGCAGATAAGCTGAACTTCATCCGTTACCTGTCTCATTTCCGCTGCGTGCACAGAGGAGCCGCCTTCGCTAAGATGAGGACCACGTCTGTGAGGAAGCTGCTGCCGGAGTCCTGGGGCTTCTTATGTCCGGTTCACACTCCTGACGGAGAACCGTGCGGCCTCATGAACCACCTGACAGCCCACTGCGAGATTGTGGCCCCGGTGCATCCTACAACAACCCTGCCTGCCTTGCTCTGCTCTCTGGGTGTAACTGCAGCAGATGGGAGCCCCAGCCAGCCGTTTTCAGACTGTTATCCCGTCATACTGGACGGAGCCATGATTGGCTGGGTGGAAAAAGAAGTAGCACCGTCTGTCACTGAATCTCTTCGTAGATTTAAGGTGCTGGGAGAGAGAAAAATTCCTGCCTGGTCTGAGGTGGTTCTGGTTCCTCAGACAGGTAAAGCCAGCTTGTACCCAGGCCTCTATCTGTTCACCACACCGTGTCGCATGGTACGGCCCGTCCGGAACCTCAGCCTGGGAAAACAGGAGCTTATTGGCACCTTTGAACAGGTGTATCTAAACGTGGGCATCTTCGAGGAAGAGCTGGAGCAGGGAGTGACAACGCATCAAGAGCTGTTTCCTCACAGCATGCTGAGTGTGGTGGCAGAATTCATCCCCTTCTCCGATCACAATCAGAGCCCCAGGAACATGTACCAGTGCCAGATGAGTAAACAGACAATGGGCTTCCCGCTGCATTCGTACCAAGAACGAACAGACAATAAACTGTACCGTCTGCAGACCCCTCAGAGTCCTCTGGTCAGACCCGCGATGTACGATCACTACGATATTGATAACTACCCTATTGGCACCAACGCGATAGTGGCTGTCATTTCTTACACCGGCTACGATATGGAAGACGCTATGATCGTCAACAAGTCTTCATGGGAGCGTGGCTTCGCTCACGGTATGGTTTATAAGACTGAGCTCATAGACCTGTCCGATAAGTTCAAAGGTGACGACAGCATTGTGTTTGGGGTGAAGCCAGGTGACCCCAAAGTAATGGACAAACTGGATGCTGACGGATTGCCGTTTATCGGCTCCATGCTGAAGTATGGAGACCCTTACTACAGCTACATCAATCTCAATACCGGCCAGAGTTATGTGGTCTTCTTCAAGTACCAGGAGAGCTGTGTGGTGGACAACATCAAGGTGTGCAGCAATGACACCGGCACTGGCCGCTTCAAGCGCATTTGCATCACAACCCGCATTCCCAGAAACCCCACCATCGGAGACAAGTTCGCCAGCAGACACGGTCAGAAGGGAATTCTGAGCCGCCTATGGCCCGCGGAGGACATGCCTTTCACGGAGAGCGGCATGTGCCCAGATATCCTCTTCAACCCGCACGGCTTCCCCTCCAGAATGACCATCGGGATGCTCATCGAGAGCATGGCTGGAAAATCCGCAGCCCTCCACGGCTTGTGTCACGACGCCACGCCGTTCAAGTTCTCCGAGGAGAGCTCTGCGCTCGAGCACTTCGGCGAGATGCTGAAAGCCGCAGGATACAACTACTACGGCACGGAGCGCCTCTACTCCGGCATTAGCGGCCTGGAGCTCGAGGCGGACATCTTCATCGGGGTGGTTTACTACCAGCGCTTGCGTCACATGGTCTCTGACAAGTTCCAGGTCAGAACTACAGGAGCGAGAGATAAAGTGACCAATCAGCCGCTGGGAGGGAGGAACGTTCAGGGAGGAATCCGCTTCGGAGAGATGGAGCGGGACGCTCTGCTTGCTCACGGGACGTCGTTCCTGCTCCACGACCGTCTCTTTAATTGCTCGGACCGTTCTGCGGCGCAGGTTTGCATGGGCTGCGGCAGCCTGCTGTCGCCGCTTCTGGAGAAGCCGCCTCCTTATTGGTCAAATACACGTCATCGGAAAACCATTTGCTTGCTGTGCAACAAGAGCGACTCTATCGAGACTGTGTCCGTTCCTTATGTGTTTAAATACTTTGTCGCAGAGCTTGCGGCAATGAacgttaaaattaaattagatgtCAAGTGAAATTCTTCGACTTCGAAAATAAAGTGCCTGAGCATATCATCTTATTCACTTGAGTGTTTATACTTCCTTTTGTATTGTGAAGAAATGGACTGCTGAGAATCTTCCATCAGTAGGCAGGATTAATGTGGCCCGTTTAAACATGTCAAGAACATGTATAGGAATTGAATACATTTCTTTACTAATAATTACTATAGACTATTACTGAATGGTGAATATCCATTTCAtgcaaacgttttttttctttgcacacaaacattaataaacatggtAGTTATCCGCTCATTGAGCATTATGTAAAAATGATGTGATTTATGAACTAAGATTTTGCATAAATTTCAATACATacagatgaataaa

Function

symbol description
polr1b Enables RNA polymerase I activity. Involved in neural crest cell migration. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex. Is expressed in several structures, including alar plate midbrain region; eye; liver; musculature system; and optic tectum. Used to study Treacher Collins syndrome. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 4. Orthologous to human POLR1B (RNA polymerase I subunit B).

NR:

description
DNA-directed RNA polymerase I subunit RPA2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0032549 ribonucleoside binding molecular_function

KEGG:

id description
K03002 RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255785.1 True 3823 mRNA 0.50 15 16292761 16302095

Neighbor

gene id symbol gene type direction distance location
dkk1a LOC107601033,LOC107665569,LOC107747256,LOC107719231,LOC107702737,LOC107586111 coding upstream 321449 15968755 ~ 15971312 (+)
prkg1a prkg1a,prkg1b,LOC107747254,LOC107665604,LOC107702750,LOC108263833,LOC108443637,LOC107586071,LOC103355670 coding upstream 325936 15916832 ~ 15966825 (+)
ankrd2 LOC107586109,LOC107747258 coding upstream 404659 15877514 ~ 15888102 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding upstream 431299 15797433 ~ 15861462 (+)
got1 got1,LOC107665595,LOC107601049,LOC107586067,LOC107702745 coding upstream 519216 15764954 ~ 15773545 (+)
LOC122356348 LOC107747251,LOC107549156,LOC107665613,LOC107676394,LOC107719205,LOC107586077 coding downstream 25762 16327857 ~ 16332665 (+)
cdc42ep3 cdc42ep3,LOC107549143,LOC107665567,LOC107676396,LOC107747292,LOC107719229,LOC107586113 coding downstream 79263 16381358 ~ 16390115 (+)
opn3 opn3,LOC107549142,LOC107665579,LOC107747290,LOC107586115,LOC107719228 coding downstream 120689 16422784 ~ 16432009 (+)
ide ide,LOC107665588,LOC107549153 coding downstream 146639 16448734 ~ 16469493 (+)
cpeb3 cpeb3,LOC107586080,LOC107719219 coding downstream 186782 16488877 ~ 16515704 (+)
LOC122356273 NA non-coding upstream 377815 15898871 ~ 15914946 (+)
G94176 NA non-coding upstream 504531 15774767 ~ 15788230 (+)
G94175 NA non-coding upstream 518366 15773969 ~ 15774395 (+)
G94174 NA non-coding upstream 528187 15764340 ~ 15764574 (+)
G94173 NA non-coding upstream 530794 15761692 ~ 15761967 (+)
LOC122356350 NA non-coding downstream 59577 16361672 ~ 16381076 (+)
G94361 NA non-coding downstream 239090 16541185 ~ 16542938 (+)
G94365 NA non-coding downstream 255741 16557836 ~ 16558137 (+)
G94397 NA non-coding downstream 439372 16741467 ~ 16796842 (+)
G94481 NA non-coding downstream 583989 16886084 ~ 16925137 (+)
nkx1.2la nkx1-2,nkx1.2la,LOC107601042,LOC107702751,LOC107665606,LOC107586110,LOC107719237 other upstream 387852 15901540 ~ 15904909 (+)
G94186 st3gal7,LOC107665608,LOC107601047,LOC107747259 other upstream 415339 15873444 ~ 15877422 (+)
hps1 hps1,LOC107747297,LOC107665607,LOC107719211,LOC107702747,LOC107586068 other upstream 420945 15864839 ~ 15871816 (+)
LOC122356934 LOC107747267,LOC107665602,LOC107601027 other upstream 974584 15314814 ~ 15318177 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other upstream 978105 15295849 ~ 15314656 (+)
G94324 NA other downstream 213732 16515827 ~ 16518826 (+)
G94378 capn1a,LOC107549131,LOC107676389,LOC107586085,LOC107679188,LOC107734280 other downstream 295686 16597781 ~ 16605383 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other downstream 1258201 17560296 ~ 17575938 (+)
G94760 NA other downstream 2137078 18439173 ~ 18439583 (+)
G94789 LOC107563058 other downstream 2234797 18536892 ~ 18537443 (+)

Expression


Co-expression Network