lgmn (lgmn,LOC107705425,LOC107602950,LOC107654963,LOC107682791,LOC107739877,LOC107553201)


Basic Information

Item Value
gene id lgmn
gene name lgmn,LOC107705425,LOC107602950,LOC107654963,LOC107682791,LOC107739877,LOC107553201
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13970422 ~ 13977113 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255798.1
ATCTGATTGGATGGCGCATGGAGTCCATCTGCGCTGATTGGCTGTTAGGCATGCATCGTCGTAGCGCTGATTGTAATAAAGCAACGCGTAGTTCCAGTGAAGGCAGCTCGGGCAGCGCACACAGAACGGTAGACTGCAGAGATGAGCCTACGGACAGTAGCACTTTTAGGTCTCACCCTGAGCCTGGGGCTGGTAGTGAGTGGTTTTCCTGCCGAGCAGCCAGAAAATGGGAAGCACTGGGTCGTTATTGTGGCTGGTTCGAATGGCTGGTACAATTACAGACACCAGGCCGATGTATGCCATGCATACCAGATTGTCCATAAGAATGGAATTCCCGATGAGCAGATTGTGGTGATGATGTATGACGATCTTGCTAAAAGCCCAGATAACCCTACTCCAGGAATGATCATAAACCGACCCAATGGATCAGATGTTTACAAAGGAGTGCTGAAGGACTACACTGGTGACGATGTGACTCCTCAGAACTTCCTGGCGGTGTTAAAAGGTGACGCTGAGAGTGTAAAAGGAGGCTCTGGAAAAGTGCTGAAAAGCGGTCCAAATGatcatgtgtttgtgtatttcacTGACCATGGAGCCCCAGGTCTACTGGCCTTCCCTAATGATGATctTCTTGTAGATGACCTGATGAAAACCATCAAGTACATGcaccaaaacaacaaatacaagaAGATGGTGTTTTATGTTGAAGCCTGTGAATCTGGCTCTATGATGAAGCCTCTGCCGGTTGATATTAATGTCTATGCTACCACCGCTGCCAACCCTGATGAGTCCTCATATGCCTGTTACTATGATGAAGCCAGAGACACCTACTTGGGAGACTGGTACAGCGTTAACTGGATGGAAGACTCTGATGTGgAGGATCTTGGCAAAGAGACTTTGGCCAAACAGTTTAAGATCGTAAAGGCCAAAACCAACACCAGCCATGTAATGCAGTATGGAAACAAGACACTGTCCCACATGAAGGTGATCGCATTCCAGGGTAATTCGAAAGGTCTTGATAAGGCACCGGAGCCTGTGTCTTTGCCTGTGATTACTGAACATGACCTCATAAGCAGCCCTGATGTGCCCCTTGCAATCATGAAGAGAAAACTCCAGAAGTCCAACGACGTTAATGCTGTTGTCGGTTACatgaaagaaattcatgaacatCTACAGGTGAGGGAGCTGCTTGGTAATACCATGCGTAAGATTGTGGAGCATGTGGTGcaggagaaagaggaagtgcAGGATTACCTGGAAGGACGTGAAGAACTCACGGAGTATGACTGTTATAAAACCGCGGTCAATCACTACAAGAAACACTGCTTTAACTGGCACCAGCAGGAGTATGAATATGCTCTGAGACACCTGTACGCTTTAGTAAACCTGTGTCAGGGAGGACACCAGGCCCAGAgAATCACAACAGCCATGGATGATGTGTGTTACTTCAGACAGTAGCAACAAGAACTTGTAAGCCCCTGAAGACTTGCTCTGGATGGACTACTCTTTGCACAAAAGAATCTGACCGTGGTGGAAATCTGTATCATCACACACAACTttgatttttatctttttgaaatgtttcttttaatgagGACTTGCACttttaatgtgatgttttactgatctacatttgtttaaaaaaagaaatgtgcttTAAGATACTGCCCAGTGACCTCTGACAGACATTTTGGGctgttcaatgttttttttttttgtagttgttgttgttgtgggtTTTCTTTCCTTCAGATGGCTCCTGAAGgattttgttttggggtttttttgtacaaCTATATAACTTTGGACCTCAATTACtgtcatttttagttaaaaaaaaaaaaaaaaaaaaaaaaaaagcttttaagatTTGGAAACCAAAGTATTAAATGTCCAGTCACTGAATAAAGTCCAATCCCTCAGGATGTTTAATAGATGCATTCAAGCAAATCTAAATCAAAcactatataaacacatttagctACATGCTGCACtaagattttttgtttgtttgttttgggtttttgggttttttttatctgcttgTTGACTGAGCCATGACAATACCCAATTTCTCTCTAGCTCTTCTTAGGTATACATTTAGTCAATAACCAATCAAACAAAAGTGtaaactaacctaacctgaAGTCTGTGGTCATACTTAACAAGTGTCTTAAATCACTGAGATAACTGCTCCAAAACAACTGCAGTTAATGAGCAGGTGTGTTTAGTGTAATGGTGGATGTGTCAGGCTGTGCTATTATGTCAAGTGCCCTCTGTTTAGAGTAATTTGAGGCTAAAGGAAGCTGTAATGTTTGAGGAGTGTTTGCTGGAGTTTGAGTTTTGTAAGAAAAGTGAGCTTGCACTGACAACATAGGTGAAAACACTCTATGAAACAATACTCTGTGAATGAATTACTGTCAATGTTAAGCAGTGAGTTATtgattataaaagtaaaaataaacctgAATTGAgtgaa
>XM_043255799.1
ATGCTGCTCTGAGGCTTGTTGATCTGATTGGATGGCGCATGGAGTCCATCTGCGCTGATTGGCTGTTAGGCATGCATCGTCGTAGCGCTGATTGTAATAAAGCAACGCGTAGTTCCAGTGAAGGCAGCTCGGGCAGCGCACACAGAACGGACTGCAGAGATGAGCCTACGGACAGTAGCACTTTTAGGTCTCACCCTGAGCCTGGGGCTGGTAGTGAGTGGTTTTCCTGCCGAGCAGCCAGAAAATGGGAAGCACTGGGTCGTTATTGTGGCTGGTTCGAATGGCTGGTACAATTACAGACACCAGGCCGATGTATGCCATGCATACCAGATTGTCCATAAGAATGGAATTCCCGATGAGCAGATTGTGGTGATGATGTATGACGATCTTGCTAAAAGCCCAGATAACCCTACTCCAGGAATGATCATAAACCGACCCAATGGATCAGATGTTTACAAAGGAGTGCTGAAGGACTACACTGGTGACGATGTGACTCCTCAGAACTTCCTGGCGGTGTTAAAAGGTGACGCTGAGAGTGTAAAAGGAGGCTCTGGAAAAGTGCTGAAAAGCGGTCCAAATGatcatgtgtttgtgtatttcacTGACCATGGAGCCCCAGGTCTACTGGCCTTCCCTAATGATGATctTCTTGTAGATGACCTGATGAAAACCATCAAGTACATGcaccaaaacaacaaatacaagaAGATGGTGTTTTATGTTGAAGCCTGTGAATCTGGCTCTATGATGAAGCCTCTGCCGGTTGATATTAATGTCTATGCTACCACCGCTGCCAACCCTGATGAGTCCTCATATGCCTGTTACTATGATGAAGCCAGAGACACCTACTTGGGAGACTGGTACAGCGTTAACTGGATGGAAGACTCTGATGTGgAGGATCTTGGCAAAGAGACTTTGGCCAAACAGTTTAAGATCGTAAAGGCCAAAACCAACACCAGCCATGTAATGCAGTATGGAAACAAGACACTGTCCCACATGAAGGTGATCGCATTCCAGGGTAATTCGAAAGGTCTTGATAAGGCACCGGAGCCTGTGTCTTTGCCTGTGATTACTGAACATGACCTCATAAGCAGCCCTGATGTGCCCCTTGCAATCATGAAGAGAAAACTCCAGAAGTCCAACGACGTTAATGCTGTTGTCGGTTACatgaaagaaattcatgaacatCTACAGGTGAGGGAGCTGCTTGGTAATACCATGCGTAAGATTGTGGAGCATGTGGTGcaggagaaagaggaagtgcAGGATTACCTGGAAGGACGTGAAGAACTCACGGAGTATGACTGTTATAAAACCGCGGTCAATCACTACAAGAAACACTGCTTTAACTGGCACCAGCAGGAGTATGAATATGCTCTGAGACACCTGTACGCTTTAGTAAACCTGTGTCAGGGAGGACACCAGGCCCAGAgAATCACAACAGCCATGGATGATGTGTGTTACTTCAGACAGTAGCAACAAGAACTTGTAAGCCCCTGAAGACTTGCTCTGGATGGACTACTCTTTGCACAAAAGAATCTGACCGTGGTGGAAATCTGTATCATCACACACAACTttgatttttatctttttgaaatgtttcttttaatgagGACTTGCACttttaatgtgatgttttactgatctacatttgtttaaaaaaagaaatgtgcttTAAGATACTGCCCAGTGACCTCTGACAGACATTTTGGGctgttcaatgttttttttttttgtagttgttgttgttgtgggtTTTCTTTCCTTCAGATGGCTCCTGAAGgattttgttttggggtttttttgtacaaCTATATAACTTTGGACCTCAATTACtgtcatttttagttaaaaaaaaaaaaaaaaaaaaaaaaaaagcttttaagatTTGGAAACCAAAGTATTAAATGTCCAGTCACTGAATAAAGTCCAATCCCTCAGGATGTTTAATAGATGCATTCAAGCAAATCTAAATCAAAcactatataaacacatttagctACATGCTGCACtaagattttttgtttgtttgttttgggtttttgggttttttttatctgcttgTTGACTGAGCCATGACAATACCCAATTTCTCTCTAGCTCTTCTTAGGTATACATTTAGTCAATAACCAATCAAACAAAAGTGtaaactaacctaacctgaAGTCTGTGGTCATACTTAACAAGTGTCTTAAATCACTGAGATAACTGCTCCAAAACAACTGCAGTTAATGAGCAGGTGTGTTTAGTGTAATGGTGGATGTGTCAGGCTGTGCTATTATGTCAAGTGCCCTCTGTTTAGAGTAATTTGAGGCTAAAGGAAGCTGTAATGTTTGAGGAGTGTTTGCTGGAGTTTGAGTTTTGTAAGAAAAGTGAGCTTGCACTGACAACATAGGTGAAAACACTCTATGAAACAATACTCTGTGAATGAATTACTGTCAATGTTAAGCAGTGAGTTATtgattataaaagtaaaaataaacctgAATTGAgtgaa

Function

symbol description
lgmn Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within several processes, including axon regeneration; negative regulation of bone mineralization; and negative regulation of osteoblast differentiation. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pleuroperitoneal region. Orthologous to human LGMN (legumain).

NR:

description
PREDICTED: legumain

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K01369 LGMN; legumain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255798.1 False 2479 mRNA 0.42 14 13970422 13977092
XM_043255799.1 True 2497 mRNA 0.42 14 13970422 13977113

Neighbor

gene id symbol gene type direction distance location
si:dkey-157l19.2 LOC107705424,LOC107654964,LOC107602919,LOC107680818,LOC107739876,LOC107553200 coding downstream 1793 13946090 ~ 13968629 (-)
zgc:153911 LOC107739899,LOC107683281,LOC107553199,LOC107705423 coding downstream 31597 13936768 ~ 13938825 (-)
LOC122356415 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 coding downstream 86250 13858830 ~ 13884172 (-)
LOC122356831 erlec1,LOC107654972,LOC107679899 coding downstream 117968 13846841 ~ 13852454 (-)
LOC122356402 mycla,LOC107680680,LOC107739875,LOC107553198,LOC107576479,LOC107654967 coding downstream 227398 13739649 ~ 13743024 (-)
pcnx1 pcnx1,pcnx,LOC107683773 coding upstream 979 13978092 ~ 14005778 (-)
med6 med6,LOC107654960,LOC107602956,LOC107683373,LOC107553190 coding upstream 29625 14006738 ~ 14009585 (-)
map3k9 map3k9,LOC107705427,LOC107654958,LOC107602953,LOC107553203 coding upstream 39908 14017021 ~ 14030517 (-)
slc8a3 slc8a3,LOC107654959,LOC107705428,LOC107602954,LOC107739881 coding upstream 54243 14031356 ~ 14070144 (-)
actn1 actn1,LOC107705429,LOC107602958,LOC107654957,LOC107739883,LOC107680897,LOC103359947,LOC108440922 coding upstream 106370 14083483 ~ 14108341 (-)
G93879 NA non-coding downstream 40128 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 281796 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 304162 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 306511 13661750 ~ 13663911 (-)
G93583 NA non-coding downstream 315073 13654379 ~ 13655349 (-)
G93905 NA non-coding upstream 210426 14187539 ~ 14189904 (-)
G94003 NA non-coding upstream 895319 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 1003883 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 1302294 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 1627574 15604687 ~ 15605713 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 58585 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 65720 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 252108 13693026 ~ 13718314 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other downstream 402397 13564422 ~ 13568025 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other downstream 411588 13520413 ~ 13558834 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other upstream 102419 14079532 ~ 14082790 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other upstream 183210 14160323 ~ 14164414 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 1047719 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 1250219 15227332 ~ 15253357 (-)
G94128 NA other upstream 1587504 15564617 ~ 15583917 (-)

Expression


Co-expression Network