LOC122356744 (rab11fip2,LOC107733785,LOC107666531,LOC107711431,LOC107585298)


Basic Information

Item Value
gene id LOC122356744
gene name rab11fip2,LOC107733785,LOC107666531,LOC107711431,LOC107585298
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6994152 ~ 7010113 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255800.1
CCGTGACCACATCGGCGGAAATGAGGAACTAGGAAGTCGATTTGCAGGGCTGATGTGGAATGCCACACATTTGTTTAAGATGAATTAGTGTTGCTCACGGCAACTCGTTCATTTTCATCTACCACAAGTACCGATTGGCATAAGCGGTCATCCCACGTGCGGTGGCGACGCTAGTTTGTTCGAGAAAGATGCTTCAGAGgtgACCTGAATTGGAGCGGGGCGAATGTGTGGGTTGTTTGCAGAGTGTAATGACATCATTACCTGTTAGATATATAGATGCGGCTTTTGTGTTTTATCTACTCTTGGTCACTCATTTCCTGTGATtagaaactaaacaaaatgcCAAGGCCGAATTGAAGTAATACGTCTATCAGTTCACACGCCAAAATCCACAATCGTACACCTGAAGCCATCATGTCATTAGGCGAACAGTCACAGAAGTGGTTTCCAACTCACGTTCAAGCCACTGTTCTTCAAGCCACGGACCTGCAACCAAAGGGCAAGAATGGCACCAACGATGCCTACACGATCATCCAGCTGGGCAAAGAGAAGTACTCCACATCGGTGGCGGAGAAGACCCTCAGCCCGGTGTGGAGAGAAGAAGCTTCATTTGAACTGCCAGGGCTGCTGATGGAGAGCAATCCGGAGGTGTATGAGCTGTGCCTCACAGTCATGCACAGGTCCCTGGTTGGGTTGGACAAGTTTCTGGGCCAAAAAATCATCAACTTAAATGAGATATTTGACAATAAGGAACGGCGGAAAACTGACTGGTACACTCTAGACTCACGGCCTGGTAAGAAGAGGAAAGACCGAGGCAAGATTCAAGTTAGCATCCAGTTTATGCGGAACAACATGACCGCCAGTATGTTCGATTTGTCAATGAGAGACAAACCCAGATCGCCGTTCTCCAAGCTCAAGGAAAAGATGAAGGGTCGCAAGCACGACGGTGCCTTTTCAGACACATCCTCTGCCATACTTCCACGCTCAGGACAGAGTGAGACTGATTCTCTGCCAGACCAGCACCCACATCCTCACCCTCACCCTCAGGCTGCTCCTGAACCCAAGCCAAAACGCTCGCTGCTCACTGGGACGCAGAAACTTTCTGCTGCTCACTCTATGTCTGATCTGATAGGAACTCACTTCAGGCCCAAACTCGACTCCATGAACTCAATTGAGGAGAAAGGGGTCGCTGCATCTCACAGGCACTCTCAGAGCGATGGGTATGGTTGTCCAACCACCGACGTTCCATGTGACCCCTTTTCCGACATTGGAGACAACATGCCCCAGAAATTTGCCACTCTCCCACGCAACCGCAATCCCTTTGAGGGAGATCAGGGGATGCTGTGGGGggcagagaagagagagaaggagaagaaggtCGGTCTTCTGGGGAGAGTGACTGGgaagaaggaaggaaagaaaacgGCCGCTGGAACGCGAACAGGAAGCTCTGGAGACCTGCGATCTCCAAACCCCTTTACAAGTGAAACCTCAAGTGAAACCAACCCTTTCCTCTCACACTACAGATCCAgtgacAACATGAGAAATCCCACCAGTACTGAGGACCTTACACAGAGATTCAAAACCTCTCCTGAAAAGAAGCACGGCATAAAAAGTGCAAGAGAGCACGAGCCTGAACATCTGCAGACCAATATGGCGGCCTACAGCAATCTCTCCTTTGAAGAAGTTGTGCAAGAGCTCATCAAGCAGAAAGATGTGGTGAGAAAAAAAGATGCTCATATTCGAGAGCTGGAGGACTACATTGATAACCTGCTGGTCAGGGTAATGGAAGAGACACCCAGCATCCTGAGAACACCCTATGAGCCCAAGAGAAAAGCTGGGAAGATCTCAAAGAAGTAAAGGATCTCCAAAGTATACTGTAACGGTTTTAGGTATTGCTTTTAAAAGGGCGTTTTAATGTCACGTCTGACAGGTCAAGTCATGGACAGATTTCTTGCCATAAATTTACTGTAGGTTTTTAAGAACAATCGGGTGTATTGTGAAGAAAGATAGGCACTAAATGTGGCGATGCCAAAACCCCCTTTttagatttttcctttttttttttttttttaaagaaacttttttgcTGTAGACTAATACTTTGAGTAAAACAAGCAGCCATTAATAGTTTAGAGCGGCGTTCTCGCGCGAAGAGACCAATGTTATGTTTTTACCGACAATAACTGTGTTTAagttgacttttattttggattcagTCAGTATAACACAATTGAGCACTTCATACTCTCACTGTGTTTTGGGATGATCACTGGGGCGGACTGTCCATATGAGGCCTTTAATTTTCTGTGACGGAATCATACAAAAGCTGTACCTGATCAGCTGACGTGCGTTTGTCCACATATATGTTATGAAGCAAGAAAACACTTGGATGGCACCACGGGACATAGAAGTGATCGTTTACCGCATGTTTTAGTACCAAATCATATTGGGTTTGCCAAGGTAACCCCTGTTACTTTTGATGGCGTTTACATATTGACCTGTGTTTGGTGCCATATTGATACGTTACAAGATGTCGGTACTGGATTCTTTTGGtactttttttcaaagcatatgtctataaaataatacactggTACAGAATTACactactaatatttattttgagcttGATTGCAATGAGCAAATGTGAATGTGAATAACACTGTTCACTTTTTAAGTCTAAAAAAACTAACTGCCTGTTATATACAGTGATGACAAAAGTGTAGAAATGAGCATCCAGTCTCCAAAGACTTGATTCTGAATGTCCTTCAGTTAAACAGGAATGTACTGATGCCGAATATCTTTAGTGTATCCGAGAACTGTCAAAATGTGTGGGCTGCCTACAGTTGACTACACCAAAGTGTAAATGGTTTTTGATGAAACTTAAGCTAGTCGGCCAGTCAATCAAGTACATAAGTATTATACAGCctctttttaatttcaaattttacCAGAGCAAATCTAGGCCATCTGTATTTAAAACCACAGCAAATAACTGATTGATTTGGCACATCTGTATGACTCATTATGGAAACATTTCAGTCGGTTTGATTCATTACAATGTATAGCATGTTTCGTGATGTAGACAAAAGCTAGCAGAAGAACTATCGTTTACAGTTTGCTTTGTAGTTTAAAGGCAGTACTACTTGACGTTGTACTGCCTTCCCGATATAGTACACTTCTTGTAGTGTTTACTACGTTTTTCTTGTGTCATCTCTGGTACGTATCTGGTGAGAAAATGACATTGGCTATCATTCTTGGTAACTCGCCATATATTTTTGCACCTTGGGCCGTAACACTGGAGCCTATGTGCAGTGAAATGCTGTACAGCAGTGGTGCATGTGCGCcccgctttaaaaaaaatgtagatttgaGAAATCTAGAACGATTGTAGTAAGCCAGTTTAATATGTTAGCCCTTCGTGTGACGAACAAAACAATTCTTTAGGTTCTCTGTGTATATAGCTCTGCAGAAAGCTTCCCAGAAGTGGTTTTCTTAACTACACGGTAAAACACTGTGCTGGTTAGTTGTGCTGGAAAGGAAGTCTTGTCTTTTATAATATTCAGTCAcaatgagcaagtgatgtattctagctgtaaattattattgttttgttcattccaagttttatttacttgcattttaCGTACTTGGGGAggtttacatgtgtgtattcATGTTAAAATCATTCAGTGCCACATGCAGTGTTACACAGTGCTGACATTAGTTAAACTCTCTATAGTTTGTCAGTTTTCTAAAAATGAGACCATTACATTTTGCGTGAGCAGACAGAAgctatattttttccatttagttctgtttacatgcaaaaatatggaaaaatgtgttaaagcttatttttacaaataatttacaaatgttGTTTGCCAGGCTCACGTTGTTTAAACTAGGAGCATGCTATTTATTAaggttattttttgttttgcggTATATTTGTCACTggccaaaaatgttttattgaattaattcaATTCATAAAAATTATAAGATGAAGAGTTAGCTATAGCATGTATAAGTAGCTatagtttctctctctctatttgtCATCGGATGTGTGGCAcctatgtgttttttttttggtttttttcccaAGACCTTTCAATCAAACAAGGTTCAAAATTGCTTAAGATTTGCTGTAGATCTTTTTGTCAGATGATAAGTGTTGACTTGCATCGATCATATTCAGCTGAGCACTTTGCTTCTCCTGTCTCATTGAACTGGACCTGCTATGCATCTCCCTCCAGAGCAAATCTGTGTGGTACACTGAATGTATTTTGACCAATCAGCAATGTCTGTAAATCACAAACACAGTGTTGATTATCCTGTGTAGATATTACCTAGCActtcttttattactttttacagcTGAAATGATGCTGACACATTGTTTGCTTTCACTAATATTAACGGTATAATTGATCATCATGGTTTTAAGTTGATTATCAAGAAGACATCTTTAATGTGTATGTTAATCCATTGGATTATTAATGTTCCCAGTGTTTAGACTACctgttatttttgccatttctttccttttgctCCATGCTTGATCTTTtgattttcaacattttattgttgtatATTTAAAGATGTAACGCTATTGTTAAAGTGatcatatttgtttgtatgcTGCTATTTTCCTGCTGTCTCCCCAGATGGTTTAGTAACCGTAAAATTCACACGGATTCATCAAGACTTGAAAAAATCTGAatggaacaaaaaaatgttttccacgTAAGGTATAGTTGCagggaaaatgtaaaaagaaaacatgaaaaccaCAGTATCAAAaaatttaatatctttttttaattattattattattttccattagGTGTCTTCTATACATTAATCTCTGGTGCTGAAAAAGAATCATAtcacatatatacatttgtacCAGTTTTTCAGTATTCTGTATCATATGGGTTTCCATTGACGTAAACGACTTTATACTCCGACACTCCTTCCATTAAAATACTTCTTCCTCTATTTCCTCCAAAAACTTGAATTTCCAATAGTGTGTAAGTAACACTACTTAGAATATAGAATCTTACCCTCAGAATTTGATTACGGTGTTAGAAAAATCATAGTTATGACGAGGACTTTTCTCAACGTGACACTTTCCTGTGGGGCGGTTAAACATTTTGCGTAGATGTAGTTATTAATGATTCATCCGGAAATATGTCTGTCTTTGCATTCTTGGCATGCGGCATGAATGAGTGTAGAAGAGAGATCTGAGTGTATTTGTCTATGTGACTACCATATAAAGGGTGAGAATGACGGTACAGCCCATTTCAATAAATCTCCTGTACTTCATTA

Function

symbol description
rab11fip2 Acts upstream of or within neural crest cell migration. Predicted to be located in membrane. Predicted to be active in endosome and phagocytic cup. Is expressed in hindbrain; neural crest; and pharyngeal arch.

NR:

description
PREDICTED: rab11 family-interacting protein 2-like

GO: NA

KEGG:

id description
K12484 RAB11FIP1_2_5; Rab11 family-interacting protein 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255800.1 True 5344 mRNA 0.40 6 6994152 7010113

Neighbor

gene id symbol gene type direction distance location
dennd10 fam45a,LOC107711433,LOC107733722,LOC107585262,LOC107602482 coding downstream 122348 6867698 ~ 6871804 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding downstream 130355 6861288 ~ 6863797 (-)
srbd1 LOC107711437,LOC107666540,LOC107585258,LOC107733719,LOC107698739 coding downstream 153591 6788832 ~ 6840561 (-)
six2a six2a,six2,LOC107666385,LOC107711421,LOC107602488,LOC107602487,LOC107733704 coding downstream 271286 6720061 ~ 6722866 (-)
prepl prepl coding downstream 433491 6553488 ~ 6560661 (-)
fam204a fam204a,LOC107733786,LOC107711429,LOC102781047 coding upstream 46136 7056249 ~ 7071527 (-)
LOC122356717 LOC107711426,LOC107666550,LOC107602490,LOC107733707,LOC107585285 coding upstream 88257 7098370 ~ 7105204 (-)
trnag-gcc_67 NA coding upstream 121032 7131145 ~ 7131215 (-)
trnag-gcc_69 NA coding upstream 124959 7135072 ~ 7135142 (-)
apcs LOC107666506,LOC107711423,LOC107706949 coding upstream 289470 7299583 ~ 7300598 (-)
G91574 eif3a,LOC107666466 non-coding downstream 114258 6879222 ~ 6879894 (-)
G91513 NA non-coding downstream 206545 6787267 ~ 6787607 (-)
LOC122357105 NA non-coding downstream 290229 6693662 ~ 6703923 (-)
G91490 NA non-coding downstream 306857 6687077 ~ 6687295 (-)
G91459 ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124 non-coding downstream 455784 6536601 ~ 6538368 (-)
LOC122356287 NA non-coding upstream 7110 7017223 ~ 7045575 (-)
G91758 NA non-coding upstream 968707 7978820 ~ 7980706 (-)
G91760 NA non-coding upstream 973833 7983946 ~ 7984316 (-)
G91769 NA non-coding upstream 987567 7997680 ~ 8041218 (-)
G91796 NA non-coding upstream 1121130 8131243 ~ 8131848 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 494579 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 597726 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 766880 6220175 ~ 6227272 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 920955 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 1067475 5920502 ~ 5926677 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 799736 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 1033452 8043565 ~ 8047901 (-)
G92267 NA other upstream 2104980 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 3164300 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 3622137 10632250 ~ 10634566 (-)

Expression


Co-expression Network