LOC122356762 (vrk2,LOC107718826,LOC107693217,LOC107560458,LOC107585344)


Basic Information

Item Value
gene id LOC122356762
gene name vrk2,LOC107718826,LOC107693217,LOC107560458,LOC107585344
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10066925 ~ 10079168 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255817.1
TTCAGGAAGTAGCGCTAGCAGGCTGTAGCAGTGAATCCGGAACTGTGTAGAAGAGTTGAAACTGTGATTATGATgagtaaaataaatcagtttctTTATAATACCACGTCTCTTATAGATTGTTGACATGTTTTTATAAGAACGCGTTGTTGTTATCACTAATTTGTTTGTGAAACAGCACTTAGATAAGGCTATTAGCCAGGAACCCTCGTCAGCCATTAGTTTCACTTTGtgcatgacattttaacatcatGCCACCAAAGAAATACACATTGCCCCGTCCACTTCCAGAAGGATACGTTTTAACAGATTCAGAAAAGAAGAGTTGGCGCATCGGTAAAATCATTGGAAAAGGTGGTTTTGGACTGATTTACTTGGCCTCTCGTGATGTGAATGTCCCTGTTCGTGATGACGCTGATTTTGTGATCAAAGTGGAATATCATGAAAATGGACCTCTATTCTCAGAATTGAAATTTTACCAACGAGCAGCTAAGCCCGATACTATGAACAAATGGAAGAAGTCCAAACAGCTGGAGTTTTTGGGGATTCCAACTTACTGGGGGTCCGGACTGACTGAAAGTAATGGAACAAGGTACAGGTTTATGGTGATGGACCGGCTGGGCACAGACCTGCAGAAAGTGTTTATGGACAATAGTGGACATTTGAAGAAGCCCACTGTGCTAAAGTTGGGTGTTCTCATGCTGGATGTGCTGGAATATATTCATGACAATGAGTACGTCCATGCTGACATTAAGGCTGCCAATCTATTACTGGGACACAAAGATCCAAGCAAGGTGTACTTGGCTGACTATGGTCTCTCGTACAGATTCTGTCCTAATGGTGAGCATAAAGAGTACAAAGAGAACCCAAAGAAAGGACACAATGGCACTATTGAGTATACAAGCATTGACGCTCACAAAGGAGTAGCCCCATCCAGACGAGGAGACTTGGAGGTGTTGGGCTACTGCTTGCTTCACTGGCAGTGTGGAACTCTGCCCTGGCTCTCATCTCTGAGGAACCCAGCTGAGGTCCAAGAGGCCAAGGCCAAGCTGATGTTAAACCTGCCAGATTCTGTCCTGATCATGTCCCCCTCTGGCTCCAGCACGGAGATTGCCAAGTACCTGTCTACTGTGAAAAACCTTGGCTACAATGAAAAGCCAGACTACCAGGCCCTCAGGAAGGTTCTGTCAGTGTCCGGGCCACAAGGCCCATTGGACCTCTCTAGGCCGAGACCGTCGGAGACAGCCAGGCCAACCACACAAAGGGCTGCAAGCCAGCCCAAGACtactgagaaaaaaacagcaagatCAAAGCCGGTGGTGAAAGCAGAGGAAGATGATGAGGAAGAGTTGGGCATGTCAACACCAAAGAAAGTTTGGAGCAAGACAAAACGAGAGACACAtaaacagAGGCCAAACAAAGCAGACATGGCCGCTAAAGGAAGCGCCAGGCAAAGGCCTATGCCTTATGAAAGTGACGAGGACATCAGTGATGAAGATGAGCCCCTGCCTGCACGAGTTCATCCTAGAACAAGAGCAGGAGCCAGACAGAGACAGGAACTTGAACAAGAAAAGAGGAACACAGATGTTTATGAGAGAAAGACCTCGAAGACCATGAGAGGAAGACAGAACCATCATTACTACAAGAACCAGCAAAAACATACTCAGAGACTAAATGATGACCATACAGAACTCTACGGCAGCAAACACAGCTGGAATCAGAACCGGTGGGAAGAAACCGATGATGAAGGAAGTGATGAACCGTTACAGTACCATTACAGAGAAGAAGATGGTTTTGGGAAATCAGAAAATCGGGGTAAATGGCCAATCAAAATTATGATCATCCTTGTTGTGATGACACTGAGTGTTGTTGGTTGTTGGTATTACCCTCATTGGAGCCGTAACACCACATGAACACTGTTCTGAATCAACAAACTGTTTTTAAGTGTTTCCTGTGACCATTTTCACAGTGATGGGCTGAAAATACAATAGAAATtagcataaatatttttttgtcatttttttgcacTAGAGATGTATTTTAACAGATGTGTATGtggatttaaataaagtgattttCAGAATTGTG
>XM_043255818.1
TTCAGGAAGTAGCGCTAGCAGGCTGTAGCAGTGAATCCGGAACTGTGTAGAAGAGTTGAAACTGTGATTATGATgagtaaaataaatcagtttctTTATAATACCACGTCTCTTATAGATTGTTGACATGTTTTTATAAGAACGCGTTGTTGTTATCACTAATTTGTTTGTGAAACAGCACTTAGATAAGGCTATTAGCCAGGAACCCTCGTCAGCCATTAGTTTCACTTTGtgcatgacattttaacatcatGCCACCAAAGAAATACACATTGCCCCGTCCACTTCCAGAAGGATACGTTTTAACAGATTCAGAAAAGAAGAGTTGGCGCATCGGTAAAATCATTGGAAAAGGTGGTTTTGGACTGATTTACTTGGCCTCTCGTGATGTGAATGTCCCTGTTCGTGATGACGCTGATTTTGTGATCAAAGTGGAATATCATGAAAATGGACCTCTATTCTCAGAATTGAAATTTTACCAACGAGCAGCTAAGCCCGATACTATGAACAAATGGAAGAAGTCCAAACAGCTGGAGTTTTTGGGGATTCCAACTTACTGGGGGTCCGGACTGACTGAAAGTAATGGAACAAGGTACAGGTTTATGGTGATGGACCGGCTGGGCACAGACCTGCAGAAAGTGTTTATGGACAATAGTGGACATTTGAAGAAGCCCACTGTGCTAAAGTTGGGTGTTCTCATGCTGGATGTGCTGGAATATATTCATGACAATGAGTACGTCCATGCTGACATTAAGGCTGCCAATCTATTACTGGGACACAAAGATCCAAGCAAGGTGTACTTGGCTGACTATGGTCTCTCGTACAGATTCTGTCCTAATGGTGAGCATAAAGAGTACAAAGAGAACCCAAAGAAAGGACACAATGGCACTATTGAGTATACAAGCATTGACGCTCACAAAGGAGTAGCCCCATCCAGACGAGGAGACTTGGAGGTGTTGGGCTACTGCTTGCTTCACTGGCAGTGTGGAACTCTGCCCTGGCTCTCATCTCTGAGGAACCCAGCTGAGGTCCAAGAGGCCAAGGCCAAGCTGATGTTAAACCTGCCAGATTCTGTCCTGATCATGTCCCCCTCTGGCTCCAGCACGGAGATTGCCAAGTACCTGTCTACTGTGAAAAACCTTGGCTACAATGAAAAGCCAGACTACCAGGCCCTCAGGAAGGTTCTGTCAGTGTCCGGGCCACAAGGCCCATTGGACCTCTCTAGGCCGAGACCGTCGGAGACAGCCAGGCCAACCACACAAAGGGCTGCAAGCCAGCCCAAGACtactgagaaaaaaacagcaagatCAAAGCCGGTGGTGAAAGCAGAGGAAGATGATGAGGAAGAGTTGGGCATGTCAACACCAAAGAAAGTTTGGAGCAAGACAAAACGAGAGACACAtaaacagAGGCCAAACAAAGCAGACATGGCCGCTAAAGGAAGCGCCAGGCAAAGGCCTATGCCTTATGAAAGTGACGAGGACATCAGTGATGAAGATGAGCCCCTGCCTGCACGAGTTCATCCTAGAACAAGAGCAGGAGCCAGACAGAGACAGGAACTTGAACAAGTAAAACCAGCAGCAGAGCACAGACCAAAtgtcaaatagaaaacaGAAAAGAGGAACACAGATGTTTATGAGAGAAAGACCTCGAAGACCATGAGAGGAAGACAGAACCATCATTACTACAAGAACCAGCAAAAACATACTCAGAGACTAAATGATGACCATACAGAACTCTACGGCAGCAA

Function

symbol description
vrk2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human VRK2 (VRK serine/threonine kinase 2).

NR:

description
PREDICTED: serine/threonine-protein kinase VRK1-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08816 VRK; vaccinia related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255817.1 True 2088 mRNA 0.44 13 10066925 10079168
XM_043255818.1 False 1750 mRNA 0.46 13 10067308 10079168

Neighbor

gene id symbol gene type direction distance location
papolg papolg,LOC107601893,LOC107726947,LOC107666450,LOC107559338,LOC107743495 coding downstream 460422 9596826 ~ 9606503 (-)
rel LOC107726948,LOC107666554,LOC107601890,LOC107655447,LOC107559337,LOC107743496 coding downstream 472685 9584404 ~ 9594240 (-)
pdlim1 pdlim1,LOC107666525,LOC107726967,LOC107601889,LOC107655446,LOC107743498,LOC107559336 coding downstream 492350 9569098 ~ 9574575 (-)
sgpl1 sgpl1,LOC107726953,LOC107601887,LOC107655444,LOC107559334,LOC107666355 coding downstream 502852 9553287 ~ 9564073 (-)
si:dkey-192p21.6 si:dkey-192p21.6,LOC107601802,LOC107726935,LOC107666356,LOC107655416,LOC107559314,LOC100702339 coding downstream 517958 9523227 ~ 9548967 (-)
LOC122356208 pcgf6,LOC107588739,LOC107707701,LOC107656932,LOC107585366,LOC107673880 coding upstream 219989 10299157 ~ 10305442 (-)
LOC122356628 LOC107707586,LOC107588654,LOC107688299,LOC107716331,LOC107673895,LOC107585321 coding upstream 266289 10345457 ~ 10349224 (-)
chata chata,LOC107588646,LOC107683741,LOC107707518,LOC107716339,LOC107673961,LOC107585314 coding upstream 555797 10634965 ~ 10641860 (-)
slc18a3a slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 coding upstream 563391 10642559 ~ 10645119 (-)
rgra rgr,rgra,LOC107588645,LOC107585363,LOC105909826,LOC100696641 coding upstream 572662 10651830 ~ 10658909 (-)
LOC122356802 NA non-coding downstream 16542 9699013 ~ 10050383 (-)
G92427 NA non-coding downstream 366061 9700633 ~ 9700864 (-)
G92407 NA non-coding downstream 425724 9640469 ~ 9641201 (-)
G92391 NA non-coding downstream 471645 9595026 ~ 9595280 (-)
G92367 LOC107666417,LOC107726946,LOC107655437,LOC107743505,LOC107601798 non-coding downstream 612618 9451223 ~ 9454307 (-)
G92548 NA non-coding upstream 161098 10240266 ~ 10243061 (-)
G92550 NA non-coding upstream 169752 10248920 ~ 10249725 (-)
G92551 nt5c2a,nt5c2,LOC107716328,LOC107673949 non-coding upstream 192247 10271415 ~ 10273503 (-)
LOC122357134 NA non-coding upstream 196377 10275545 ~ 10293934 (-)
G92575 NA non-coding upstream 236528 10315696 ~ 10415232 (-)
G92267 NA other downstream 951374 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2019024 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 2250546 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 3567352 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 3670499 6358201 ~ 6396426 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 95245 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 553082 10632250 ~ 10634566 (-)
G92819 NA other upstream 845776 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 1121384 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 1446235 11525403 ~ 11532457 (-)

Expression


Co-expression Network