echs1 (echs1,LOC107601864,LOC107666378,LOC107676592,LOC107743519,LOC107725439)


Basic Information

Item Value
gene id echs1
gene name echs1,LOC107601864,LOC107666378,LOC107676592,LOC107743519,LOC107725439
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9021295 ~ 9023686 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255820.1
AGGCAGCGTGACTCTGCGTCGCTCTGCGTCTCTTTGCGTCGCTCTGTTACCGTTGACCCCGCACACAACCATGGCGCTGCTCTGCAGGTCCACAGGGTTACTTCTCAAGCACAGTAAACTGCTGCCCTCCGCGCTAGCAGCTGCGAGGCCATGCAGTTCAGGTGGCCAGTATCAGTACATACTAGTTGACAAAAAAGGTGAAAAGAAGAATATTGGCTTCATCCAGCTGAACAGACCAAAGGCTCTGAATGCTCTTTGTGATGGGCTCATGCTGGAGGTGGGCAAAGCCCTCGATGCATTCGAGGAGGACGGTGAAGTGGGAGCGATTATCATCACAGGAAGCGAAAAGGCCTTTGCCGCCGGGGCTGATATTAAAGAGATGCAGAATCGGACGTTTCAAGAGTGCTACGGTGGGAACTTCTTGGCGCACTGGAACAGGATATCAACAGTTAAAAAGCCCGTTATCGCAGCTGTCAATGGATTTGCGCTTGGTGGAGGATGCGAGTTTGCCATGATGTGTGATATAATCTATGCTGGGGAGAAAGCACAGTTTGGACAACCAGAAATCCTGCTCGGGACCATTCCTGGTTCCGGTGGCACTCAGAGGCTTACAAGAGCAGTGGGAAAATCCCTCTCAATGGAGATGGTTCTCACAGGAGACCGAATATCAGCTCAGGAGGCCAAACAGTCTGGTCTGGTAAGTAAAGTGTTTCCGGTGGATCAGCTGGTTTCAGAAGCGATCAAATGTGGAGAGAAAATAGCTGGCAATTCCAAACTCGTCTCGGCCATGGCAAAGGAAGCCGTTAACGCAGCATTTGAACTGACTTTAGCTGAGGGCAATCGGCTCGAGAAAAGATTGTTCCATGCAACCTTTGCGACGGAGGACAGAAAGGAGGGCATGACTGCTTTTGTCGAGAAGCGAAAGGCAGCTTTCCAGGACAAGTAAAGTTCCAGCGGAAAATATGGTGATTTTCAAACCGCTGTGTTTAGTTTGTGGTCAAACGCTGTTATTAAAATACTCTAATTTGCCTTAATTTTCTTATCaagtgttaataataaaaataaaaaaaaaaatcaggatcTTTGCATTCGGGTTGACAAACAAATGAGTAGTTCAATGAGCTCACTATTACCTTGATTTATACATTAATCATTTCTTATTAATGTCTGCTATTATCACCTTGAGACCTTCTTTGCTGACAGACTATAAATAGAGGTCCAGTGCAGTACTGTGTGTGATTTAAACACGTCCTTTGTACTAATATACACTTTAGCAGTTAGGAGAGAGATTAAGGCATTGCCCTTACCTTTCGAAATGGTTTGTAATTACTATAAAACAATATTGAAGATTGTTATAAGCCTTTGATTTGAACAGTTCGTGTGTTAATATGGcgattatttgattaaaatgaattgtgaaAAGA

Function

symbol description
echs1 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in EVL; gut; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human ECHS1 (enoyl-CoA hydratase, short chain 1).

NR:

description
enoyl-CoA hydratase, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016508 long-chain-enoyl-CoA hydratase activity molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function

KEGG:

id description
K07511 ECHS1; enoyl-CoA hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255820.1 True 1424 mRNA 0.45 8 9021295 9023686

Neighbor

gene id symbol gene type direction distance location
lgalslb lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 412 9013992 ~ 9020883 (+)
sertad2b sertad2,sertad2b,LOC107666512,LOC107676574,LOC107743523,LOC107725465 coding upstream 12951 8975089 ~ 9008344 (+)
rab1ab rab1a,LOC107676578,LOC107666439,LOC103035225,LOC107725478,LOC107601860,LOC105005759 coding upstream 64598 8950895 ~ 8956697 (+)
zgc:153169 zgc:153169,LOC107725444,LOC107666437,LOC107601788,LOC107552913 coding upstream 70713 8947750 ~ 8950582 (+)
pdcd2 pdcd2,LOC107725489,LOC107666434,LOC107601856,LOC107676576,LOC107743527,LOC107552926 coding upstream 78396 8940728 ~ 8942899 (+)
msx3 msx3,LOC107743518,LOC107552925,LOC107601809,LOC107725487,LOC107666509 coding downstream 42394 9066080 ~ 9068744 (+)
adam8a adam8,LOC107725440,LOC107666510,LOC107743615,LOC107676563 coding downstream 49156 9072842 ~ 9080744 (+)
cfap43 cfap43,LOC107743591,LOC107666552,LOC107601792,LOC107667278,LOC107578899,LOC107683315 coding downstream 79347 9103033 ~ 9116177 (+)
col17a1b LOC107667282,LOC107743515 coding downstream 96662 9120348 ~ 9137429 (+)
si:ch211-223p8.8 LOC107552909,LOC107743613,LOC107552922,LOC107667280 coding downstream 135961 9159647 ~ 9160722 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 55706 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 124386 8836716 ~ 8896909 (+)
G92048 NA non-coding upstream 230243 8789731 ~ 8791052 (+)
G92047 NA non-coding upstream 232094 8788997 ~ 8789201 (+)
G92046 NA non-coding upstream 233446 8786988 ~ 8787849 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding downstream 26681 9050367 ~ 9097905 (+)
G92111 NA non-coding downstream 116531 9140217 ~ 9144511 (+)
G92147 NA non-coding downstream 240378 9264064 ~ 9275699 (+)
G92313 NA non-coding downstream 426760 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 455735 9479421 ~ 9479752 (+)
sf3b5 sf3b5,LOC107601807 other upstream 281200 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 338243 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 710471 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 1134605 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 1182350 7836180 ~ 7838945 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 2257 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 57162 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 137831 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 406492 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1181427 10205113 ~ 10249725 (+)

Expression


Co-expression Network