si:ch211-217g15.3 (LOC107676570,LOC107743520,LOC107725431)


Basic Information

Item Value
gene id si:ch211-217g15.3
gene name LOC107676570,LOC107743520,LOC107725431
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9028351 ~ 9029769 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255822.1
TTCAGACCTAAAGTCAGTTTATTGCTGAACTTTGATCTTTAAGACAGTGATCATCAGCTCCATGTAATACACCCTTCATATTTCACTGTGCATGTCACTGCATGAGGACCCACTATGATCAGGTTTTCTGTTCTCGTCTGCCTATCAGTGCTGCTGTTCAGCACGTCAGCCAAGCCATACAGGTCCATGGAAAAAGTGTTGGGCAAATCAGTTCAGGACACTGAAGATTTTGATCATCCCAATGGAAAGATGATCCTGGGAATGAAGGAGGTGGAGCCACCACAGGACATGGACGTTACAGATTTTGACATCGATCCCAACATGTTGACCTGGAAAGCcataaaagaagaaatacaGCAGAAATATGACAGACCTGAAGAGGATAAAGATGCTCTCTACCACTCCCTTGACATAAAACCTCCAGCTGATGCAAAACAGCCTGAAAACTACTTTCAGCCACTGGGACACGGTCAGGTACGGACGTATGACAAACCAGAAGAAGATAGGGACGATTTATACCACGGCATGCTTGTTGTAGCTGAAGAGCCAATGAGAGAAAAGAAGGATGTAATTGGAGGTAATGTCAGGCCCATCTACTCAAGCCCTGAAGAGGACAAAGACGACCTGTACCACGCAGCTGTTAAAGGACATCAGTCTGACCAGCAAGCTCCGAGGGTGAATTTATTCCCCATTCGCCCCAATAGGGTGTACACAGAGCCAGAGGTAGACCTGGATGACCTTTATCATAAGCAATGATAAGATAAGTCATGTCATGTCTAAATGACTGCAATACTAGACGCTAATTCATTATGTGTAGTTTGAATTAAATGCTCTCTAAGTTTTTaagtcttaaaataaaatgtgtttttatga

Function

NR:

description
uncharacterized protein LOC109889721

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255822.1 True 873 mRNA 0.43 4 9028351 9029769

Neighbor

gene id symbol gene type direction distance location
slc1a4 slc1a4,LOC107725464,LOC107552941 coding downstream 56010 8964148 ~ 8972341 (-)
cep68 LOC107725463,LOC107666566,LOC107601859,LOC107743522,LOC107676572,LOC107552940 coding downstream 64728 8957273 ~ 8963623 (-)
LOC122356963 tbp,LOC107725488,LOC107666436,LOC107601858,LOC107676577,LOC107552942 coding downstream 81309 8943435 ~ 8947042 (-)
rhoua rhoua,LOC107601857,LOC107676561,LOC107666438,LOC107725498,LOC107743528,LOC107552943 coding downstream 88423 8932964 ~ 8939928 (-)
rab4a rab4a,LOC107601855,LOC107666448,LOC107676603 coding downstream 111289 8908815 ~ 8917062 (-)
znf511 znf511,LOC107725486,LOC107666508 coding upstream 39712 9069481 ~ 9072336 (-)
erlin1 erlin1,LOC107725471,LOC107666491,LOC107601865,LOC107743516,LOC107676597,LOC108426813 coding upstream 65932 9095701 ~ 9102704 (-)
sfr1 LOC107601867,LOC107725495,LOC107666553 coding upstream 86436 9116205 ~ 9117372 (-)
slka LOC107667283,LOC107666433,LOC107725454,LOC107552933,LOC107601868 coding upstream 107720 9137489 ~ 9158550 (-)
kat6b kat6b,LOC107601873,LOC107552931,LOC107725428 coding upstream 145154 9174923 ~ 9203419 (-)
G92251 echs1,LOC107743519,LOC107725439,LOC107601864,LOC107676592,LOC107666378 non-coding downstream 6144 9021810 ~ 9022207 (-)
G92235 NA non-coding downstream 53017 8975085 ~ 8975334 (-)
G92205 pgbd5,LOC107601786,LOC107725485,LOC107552948,LOC107743535 non-coding downstream 224945 8796871 ~ 8803406 (-)
G92195 sf3b5,LOC107601807 non-coding downstream 288262 8738975 ~ 8740089 (-)
G92021 pcnxl2,LOC107725461,LOC107601842,LOC107666362,LOC107743596,LOC107676602 non-coding downstream 349965 8667496 ~ 8678386 (-)
G92263 NA non-coding upstream 78301 9108070 ~ 9108361 (-)
G92264 NA non-coding upstream 82526 9112295 ~ 9112589 (-)
G92265 NA non-coding upstream 83138 9112907 ~ 9113298 (-)
G92266 LOC107667278 non-coding upstream 83968 9113737 ~ 9114160 (-)
G92270 NA non-coding upstream 90484 9120253 ~ 9120479 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 980450 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 1211972 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 2528778 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 2631925 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 2801079 6220175 ~ 6227272 (-)
G92267 NA other upstream 85324 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1144644 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1602481 10632250 ~ 10634566 (-)
G92819 NA other upstream 1895175 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2170783 11200552 ~ 11218985 (-)

Expression


Co-expression Network