LOC122356776 (LOC107564218,LOC107739478,LOC107706823)


Basic Information

Item Value
gene id LOC122356776
gene name LOC107564218,LOC107739478,LOC107706823
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2957658 ~ 2971147 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255830.1
TGAATCTATTGCGTCATATCCGCCATTTGGCTCTCTTGAACGCTTGTGTCGCTTGCTTTTCGCGCAGCGGACTTTTGCCAAACACAAGCTAGTTAGCGTCTAGCGAGCGGCTCACAACGCAGATCAGATGTATTACAGCAACTGTATTAAGCTACTGTTTGCGTCGATGCGACGTCAACTGTACTAACGTCTGCATGGTTGTGCGCGCGAACAAACGTGCTCGTGACACGGTTTGCTAACGTTAGCTGCTCACCGAGCAACTCGGTTGGGAAATGGGGAAAAACCGCAAGAAAGGAAAGGGGGCAGCTCAAGCAGGACCAAAGGGCATGCGTCTCCCAGCGCCTCCTCAACACAGACCTCCTCCTCAACAAGGAGGCTTTCGCGGACCTGCTCCCGGTTTCCAGATGGGCCCCCCTGGACACAGGTTTCCTGCGCCCCATCACGACTTCGGACAGCAGCCCCCCAGAATGAGGATGATGGACGACATGGAAAGAGATCGAGGGTTTATGCAAGAGCCGCAGGGATTCATGGTGAACGACGGGCCTTTTAACCGGATGGATTTCCCCGACAGGCACGAATGTCGCCCTCGCTTTGAGGGACCTGATCCAGCTTTCCGTCATCAAGAGTTTGGAAACAGACCGCCTGCACCAGCTTTACCGTTTTACCGTCCAGAGCTTGAGTATGAACCGCGTTTCCGTTCCCCGGAGTTTTGTGACAGACCTCGAGACTTCTGTCCGCCCGAGTTTAGGGGCAGACCCCCGAACTTCCGCCCTCCTGAGTTTGACGGGGGGCCAGGTTTCCACATGATGAACCCTGCTTTCGACCAAATGGAGCAGTTTGGTCCAAGAGACCAACATTATATGCCGCCAATGGACCCCCATGGCAATCATTCGTttggagagagaggagggttTGCTGCACCGCTGGCACCTGATTTCCGGGGCCCGGGGCCGGTACAGCCACCATCTGAGGCGTTCAGTAGCGCGCCTCGTCCCGCCTGTTCACCCCAACCTCCACAGAAAAAAGATCAGCTGGCTCCGAAAGAGACTAAGACTGAACCGCCTAAATCGATGGCTTTAAAGATATCATCGTTCAAGAATATCTCTGCAAAcgCACCTCGTGGACGCTCATTGGGAGTAATTTCACTTGTTGCCAATAACTGCGGTTTCATCGAACGGGAGGATCTGAAGaagttttcttttgtgtttgatgctttttttggaAACCGGGCTCTCCTGTTGCCTGGAGTTAAAGTACATTTCACAGCTGTGAAAAATCTGGGAAAAGATTGTGCAGTTGATGTGAAAGTGGCCCCAGGAGGAACCGAAGACATTGACAGCACGGTGTATGAAGGTGTAGTTCTCACAGTCCTTCCTCATGACAACGTCAAGGAGGCCAATCCTGGCTGCATCAGGACCATCATCTCCAAGGATCCCATTAAACTGCCCTTTGGAAAAGCGGACACCAGTGTGACTCTGCTGCTGTATGATCGTGTGGAGTTCCAGCTGCTGACGAATGTTATTACTAGGGAGCAAAGAGCCACAAACATCAAACCAAAAACTCCTGACACTTTTCAGCTCACCAAAGAAGTCAGGGAGATGGGTGTGATTATTAATAAGAGCGATGAAACCCTGACCATCATGACACAGAAACATGATAGCCTGACCGCCACATCTACTGACAATTTATCAGATGAAGAGCTGAATGTCATGGATGAAGTGGAGCTCACCATTTTGACTGTGAACGACACAAAGAAGGCCGTCCGACTCAAGAAGCTGCCCGAAGGCTCTGTCACCTTTAATCAAAAAGCAAAAGGCAATGAAAATATGTCTGACACGAACGACAATACATCTGGCACTGGCCCTGTCAAAGACAAGTGGAAGCCTGTGAACACAGAAGCTGGTTCTCAAGATTTAGATGTAAGCAGTGAGAAATACGAGGGGACCATTACTCAAATCGTCCCAAAGAAAAGCCCAAGTGAGGACAAAGTGATGGACAATCAAGAGTGCTCTCTGGGTTTTCTGGTCACCACAGTGGAGGGCACAGAGAAGCGCTTATCTTTTAAGTCAGGTGATGTGATCACAAAAGCCACCATGATGCTTGGTGACAAGGTCCAGTTCAACATCTCCACCAACGTTGTAACTAAGGAGGAGTGTGGCGTCAACGTAGAGATCCTGCCAGAAACTTTCCAGACGGACTCTGAAGAGCAGCGAAAGataGGGCTTGTTGTCAAGCTGGATGATAATTTTGGGTTCATCAAGACACAACAGGACcgcagctatttttttttttga

Function

NR:

description
PREDICTED: uncharacterized protein LOC107564218

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255830.1 True 2294 mRNA 0.50 12 2957658 2971147

Neighbor

gene id symbol gene type direction distance location
LOC122357122 cul9,LOC107655624,LOC107669557 coding upstream 5896 2916892 ~ 2951762 (+)
LOC122356236 apmap,LOC107702698,LOC107564208,LOC107717839,LOC107559784 coding upstream 96991 2852563 ~ 2860667 (+)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107754752,LOC107702697 coding upstream 111398 2839850 ~ 2846260 (+)
LOC122356205 LOC107719934,LOC107699158,LOC107597732 coding upstream 455337 2500682 ~ 2502321 (+)
polh polh coding upstream 469523 2482202 ~ 2488135 (+)
LOC122356067 ppp2r5d,LOC107559765,LOC107696374,LOC106605890 coding downstream 51469 3022616 ~ 3050667 (+)
LOC122356783 LOC107655626,LOC107728064,LOC107564218,LOC107739478,LOC107706823 coding downstream 238645 3209792 ~ 3227749 (+)
LOC122356787 LOC107739478,LOC107564218 coding downstream 257966 3229113 ~ 3231423 (+)
znf318 znf318,LOC107739464,LOC107564219,LOC107728066 coding downstream 263896 3235043 ~ 3246109 (+)
tjap1 tjap1,LOC107728071,LOC107559778 coding downstream 349282 3320429 ~ 3398358 (+)
LOC122356240 NA non-coding upstream 75972 2865807 ~ 2881686 (+)
G90292 NA non-coding upstream 328051 2629192 ~ 2629607 (+)
G90290 NA non-coding upstream 332375 2624938 ~ 2625283 (+)
G90232 NA non-coding upstream 475883 2481369 ~ 2481775 (+)
G90220 NA non-coding upstream 520149 2437106 ~ 2437509 (+)
G90339 NA non-coding downstream 45647 3016794 ~ 3017220 (+)
LOC122356074 NA non-coding downstream 48921 3020068 ~ 3020891 (+)
G90326 cul9,LOC107736443,LOC107564217,LOC107669557,LOC107683065 non-coding downstream 228700 3199847 ~ 3201487 (+)
LOC122356226 NA non-coding downstream 275116 3246263 ~ 3247132 (+)
G90365 NA non-coding downstream 344516 3315663 ~ 3315908 (+)
G90230 NA other upstream 487277 2469945 ~ 2470381 (+)
LOC122356772 pim3,LOC107732271 other upstream 672851 2264746 ~ 2284807 (+)
cutc cutc other upstream 776829 2176009 ~ 2180829 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other upstream 791630 2153422 ~ 2166028 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other upstream 960348 1989872 ~ 1997310 (+)
LOC122356072 znf318,LOC107739464,LOC107564219,LOC107728066 other downstream 11412 2982559 ~ 3010641 (+)
LOC122356070 dnph1 other downstream 80835 3051982 ~ 3278260 (+)
G90350 dlk2,LOC107696386,LOC107669558,LOC107559779,LOC107728069 other downstream 203588 3174735 ~ 3285406 (+)
G90349 NA other downstream 208280 3179427 ~ 3179933 (+)
G90324 cul9,LOC107564217,LOC107669557,LOC107559769,LOC107655624,LOC107706827 other downstream 216679 3187826 ~ 3192113 (+)

Expression


Co-expression Network