LOC122356796


Basic Information

Item Value
gene id LOC122356796
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4360535 ~ 4362542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255864.1
ATGAAGAGTCTGCTGCTGTATCTGCTTTTCCTGTGTAGTATACTCAGGCACACATCTGCAGTTGCGGATCTCAGTGACTGCGCAGCTGCAGGGAGCATATGCAATGTCAATGCAGATTGCTTCAAAACACGTGAGGATAAGTTTCTCTGCATGTGCCGAATGGGGTACAGGGGCACTGGAGTGCAGTGCCAGGACATTGATGAGTGTACAACTGGTTTACACAACTGCCATGCAAAAGCAGTCTGCAGTAACACTCTGGGCAGTTACACCTGCTCATGCCAAAATGGTTATTCTGGAGATGGTTTCCAATGCCAAGATATCAATGAATGTCAAACTAATAATGGTGGATGTCATGTTAATGCACTTTGCACCAACAGAGATGGAGGAAGAGACTGCACTTGTAAGTCAGGTTTCACTGGAAATGGATTTCAGTGCAATGATGATAATGAGTGTGCAAGACCGGGAATCTGTCACTGGAATGCCACTTGCACCAACAACCCTGGCTCCTATGTGTGTACATGCAATACTGGCTACAAAGGCAATGGAAATTATCTCTGCCTCGATGTTGATGAGTGCTCAGAGACTCCCGGTGTGTGCTCTGCTTTCTTTGGGTACAAAGGTTGCAAGAACCTGCCAGGATCCTACACCTGCCTCTGCAACAGTGGCTACCAAAGCAATGGACAGACATGTGAGGACATCAATGAATGTGATATCAACATCTGCAGCTCATTTGCAGAGTGTACAAACTTGCCAGGCTCATATCGTTGTACTTGTCCTGAAGGATTTGTGGGAAATGGGTTGGCATGCGTAGACATTAATGAGTGTGACAGAAAGAACAACTGTGACCCCAACGCAATATGTACCAATTTGCTAGGAAGCTATCAATGCTCGTGCCGCTCTGGGTTCCTGGGCACTGGAACAAAGTGTACTGACATTAATGAATGTGTCACCAATAACATTTGCCCAGCCAATGCTGCATGTGTCAACACAGCAGGTTCATTCCTCTGTGACTGTGGTCCAGGCTACAGCTTTAATCAAACCCAGTGCATGGATGTGGATGAATGTGCCACAGGACATTGCAGTGTTTACGCCTCTTGTGAAAACTTACCTGGTTCATTCATCTGCGCATGTGTAGCCGGTTTTGAAGGAGATGGGTTAATATGCGAGGATGTGGATGAGTGCGCAATAAAAAGGCAGTGCCATGTTAATGCACGCTGTATTAATGTACCGGGAAAATACAACTGTAGCTGTATGGTGGGATACACAGGGGATGGTGTATCACAGTGTACAGATGTGAACGAGTGTCTTGTTGATAATGGTGGCTGCAAAAACAGAGCAACATGTGTCAACAGTAAGGGGTCTTTCTCTTGCGTTTGCACCTCAGGCTTTCAGCTAGTCAATCTTACCACCTGCCAAGACATAGATGAATGCCAGCTACCTGAAAAGGCTTGTGGAATCAATGAGCAGTGCTCCAACACGGAAGGATCATATTCATGGCTTTACAGGAGATGGATCTACCTGTACAGACGTGGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255864.1 True 1536 mRNA 0.46 4 4360535 4362542

Neighbor

gene id symbol gene type direction distance location
plekhh2 LOC107678558,LOC107707149,LOC107699295,LOC107586497,LOC107590017,LOC107727353 coding upstream 11682 4325638 ~ 4348853 (+)
trnai-uau_4 NA coding upstream 288636 4071806 ~ 4071899 (+)
LOC122356299 eml4,LOC107586470 coding upstream 411580 3881586 ~ 3948955 (+)
ubr2 ubr2,LOC107669566,LOC107696377 coding upstream 601400 3729913 ~ 3759135 (+)
si:ch73-193i2.2 LOC107728794,LOC107590009,LOC107696375,LOC107739482 coding upstream 631067 3717296 ~ 3729468 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding downstream 1481 4364023 ~ 4373553 (+)
LOC122356983 LOC107727362,LOC107586506,LOC107699285,LOC107678514,LOC107590018,LOC107756817 coding downstream 10672 4373214 ~ 4377830 (+)
calm2a calm1,LOC107396020,LOC102778633,LOC102293206 coding downstream 24639 4387181 ~ 4391197 (+)
stpg4 LOC107590019,LOC107678571,LOC107708399 coding downstream 30351 4392893 ~ 4400833 (+)
mcfd2 mcfd2,LOC107727380,LOC107699287 coding downstream 75909 4438451 ~ 4441070 (+)
LOC122357002 NA non-coding upstream 114745 4244608 ~ 4245790 (+)
LOC122356176 NA non-coding upstream 218033 4137317 ~ 4142502 (+)
G90650 NA non-coding upstream 255064 4105247 ~ 4105471 (+)
G90646 LOC107707147,LOC108422651 non-coding upstream 297756 4057260 ~ 4062779 (+)
G90579 LOC107586473,LOC107758132,LOC107666233 non-coding upstream 347419 3992508 ~ 4013116 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding downstream 97097 4459639 ~ 4465868 (+)
G90700 NA non-coding downstream 108523 4471065 ~ 4471744 (+)
G90888 NA non-coding downstream 602160 4964702 ~ 4965015 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding downstream 640868 5003410 ~ 5013662 (+)
G90905 NA non-coding downstream 672817 5035359 ~ 5036116 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 6604 4182499 ~ 4353931 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 527985 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 646772 3620406 ~ 3713763 (+)
G90377 NA other upstream 910518 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 1079538 3277837 ~ 3280997 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 199106 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 629611 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 815176 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 898494 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 1588675 5951217 ~ 5952517 (+)

Expression


Co-expression Network