si:ch73-105b23.6 (LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514)


Basic Information

Item Value
gene id si:ch73-105b23.6
gene name LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4364023 ~ 4373553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255865.1
ATGCCTCCAACTGCAAAAACACAGCAGGATTGTATTTCTGTGAATGCTGGGATGGGTCTTATTGCACTAGGGTCTCTTTGTGTGGATCTAGATGAATGTCAGTCCAATAGGGGTGGATGCCATCCTGCAGCCACATGCTACAACTCCGCAGGTGGGTTTCAGTGCCAGTGTGGCAATGGATGGGATGCCTCAAAAGGAAATGGGAATGGAATGGATGGATGCATAGACCGGAACGAGTGTTTATCTCCTGACGTGTGTTATGGCAACAGAATATGCACCAATTTCATAGGATCTTACAGCTGTACCTGCTCTACCAGAGATAGCTACTGCCCACAGCTGCCGCCAATGGAACGTGACCTGTATCCATTTGGAGAGGAAGCAGGTGATGCTGGGTTGCCAAAGACAGAGGCAGATGGAAATTCTCCATACATCACTCCTCCTGCAGGCTTTCCATTCATGGGCAAAATATATGAGCGGCTGTTTTTTTCAGATAATGGATTGGTGCAGTTTCAGTCGGTCAGTGAAAATGAGAAACTGTTGCTCCCTGCTCCATTCCCAGAGGGTTTCAATGGTAATGAGGGCCATCCCATGCTAGCTGCATTCTGGGACGATGCTGACCTTACCCTTGGGGATGGAAAACTACTATACCAGGAATACAACTTGTTCAATGTATCTGACATCTATGCTGAGGCAATATTTCAACGAACAGCACAAGATATTAGCAACTTTGAGACTGAAAGAGACAAACCCCCCTTTTCCCCCTCCTGGATACTGAAAATCACATGGGATCACGTTTTGCCTGTGTCCTATCAAAAGATTAACTTTTCTGAGACCAACACCTTCCAGTGCATTCTGACCACAGATGGACTACGTTCCTTTGCCCTACTCCGCTACAGTGACATGAACTGGGGTCCAGGACAGAGGACCAATCATGACGCTCTTATAGGTTACACTGATGGCAAAAGCAACTTTCACAATGAGATTCCAAAGCCACCAGACAACCTGTTTGGCTCAGGAGGGCGTTATCGCCCCCAGACTGTCATGGGTAACACAGGCAAACTGGGGCAGCTGGTGTATGACCTGACAGGTTCTTCTGAATCCAGCTCGGATCCTCAGAGGCAGTGCCAGGTATGGGCTTTCAATGAGCCAGATCCTAAAGAATGGGCATTAGGACTGGCACCATGTCCCTGCACCCGTGTTCAAGCACAGGAGGACCTGGCTTTTATCCTTGAGCCTGTCCCATCAGAACAGATGGCACAAGTGAGGGATCTGAGAGCTCTTAGGTGGGGTGGCAACAGGGGCCGTGTCTTTCAGTCTGTCCTGTATAACAAACAAAAGGCAGGAAAGAGATGTGTATTTGATCCAGAGGGCCCCCTGCTGGCTGGTTACAGTGAACGGTACTTTACTGACGACAAGATGCAACAACTTATGGACAAGGATCTTTTACCCTTCCAGTGGTGCTGTGTTCAGTCTTCTCTGTGTGACctttatttggaaaaaagaCCACTTGATCGGTGCCAAGGGTACAGTTGGAACAGCTCTGACAGCAGTATACCTGGGAATCGGGGGGCACCAGGCATTGGCATGGTATACGGTAGTCTCCACTTTATTACCTTTGACGGGAGTGAGTATACCTTCAAAGGTTTGGGGGAGTATGTTATAGTCCGTCTCTCCTCCAGCTCGGGATCAAACATATTCACCCTGCAGGGACAAACAGATGTTCTAGTGGTCAACGGGCAGCCCAAACTTGTGTCAGCTCTAGTACGATTAGCTGCCTTCTATCAGGGTGCTGGAAAAGTGGAGTGGCGATGTGCCGAATCCGGGGATGGACTTAAGGTCTTGGTTAATGATCAGGACATTCCCGTGTCTGTTGGAGTGGTGCATGTAAACGAGCAGGGCTTTGCGGTGCGCTGTACCTCTACGAGCCGCTGTGCAGTGGTGTACGGCGAGGGCCTGGACGTGCTCGTGTGGAGAGGCAATGCTGGGAGGCTGAGCGCTCTGGTGGAGGTCCCGCAGAGGTTCTACAACCGTACACTGGGTTTGCTAGGACACTGGAACGCCAACAGGTCTGATGACTTCCTGCTCTCCAATGGCCGTATGGTGCCTTCTGTAAACAACAACATCCCCTCTGAACAGAGCCTGATTCCCTTCGGGCAGTCATGGGCTGTTCCTGTTCCAGAGAGTCTTCTGATGTCACAGCCTCCTAGTGTTCCATTCAATCCCGTGATGACAGAGCAACTGATGTCCTCGGTGAGCCCAGATGTCCTGGCCAAACACAGTCAGACCTGCCAGGGCAGCATGCAGTGTGTGCATGACATCCTGGCCACGGGAAGCCTAGTCCTCGGCCAAGATGTTCAGAAAGACCAGCAGCTGCTTCAGAGCCGAGCGCAAATTTACGGAAACCTGCCACCCATTGTGACAGAGCCATTTGTTATCATGTGTAAAGTCAACAGTACAGTTAGAGTTCAGTTCAAGGCCCAGGATCCGAACAAGGACCCGATCACTTTCTCCATTGCCTTACCGCGCTCTCCACGGGTCAACATCGGCAGCAATGACGGTATCTTCACGTGGACCCCTTCTGGCATTCAGCCAGTCAATCTGACAGTTCAAGTGAGCGACCAAACATCCAGCTCGGTGATCACCCCTGTTCTGCAGCTCTGTAACTGTATGAACGGAGGAAGCTGTCAGTACGACAGCGTGGTGGAGAACCACCTGCAGGGAAAGTTTCAGATTGTGGGATGTCTTTGTCCATCGGGTTTCAGTGGCAAGTACTGTGATAACAGAGCAGATCCTTGTAAAGGCCAGCCCTGTTTTCCCGGTGTGGAATGCATAagacagaaagaaggagaaCCGTTCACATGTGGACCGTGCCCTCCTCCGACCGTATACCAGGGCAAACAAGGATACAAGTGTTTTGAAAATGACTTCTGCCTCCCTCCGTTCCCCTTCCCATGTCATCAGATGGCAGACTGCACCAGCACTGGCTACAATTACACATGTAAATGTAAGCGTGGCTACAAAGGCAACGGAATACAGTGCGAAGATATTAATGAGTGTCTGGACCCCTCGGCCTGTCCCAGCGCCAAGTTTGAGTGTGTGAACATGCCTGGATCAGTGCGCTGCTCATGCCGTTATCAGAAGACCAGAGACTCTGACAGCTGTGGCAAGTGGCTTTAA

Function

NR:

description
PREDICTED: fibrillin-1-like

GO: NA

KEGG:

id description
K22017 MUC4; mucin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255865.1 True 3177 mRNA 0.51 16 4364023 4373553

Neighbor

gene id symbol gene type direction distance location
LOC122356796 NA coding upstream 1481 4360535 ~ 4362542 (+)
plekhh2 LOC107678558,LOC107707149,LOC107699295,LOC107586497,LOC107590017,LOC107727353 coding upstream 15170 4325638 ~ 4348853 (+)
trnai-uau_4 NA coding upstream 292124 4071806 ~ 4071899 (+)
LOC122356299 eml4,LOC107586470 coding upstream 415068 3881586 ~ 3948955 (+)
ubr2 ubr2,LOC107669566,LOC107696377 coding upstream 604888 3729913 ~ 3759135 (+)
calm2a calm1,LOC107396020,LOC102778633,LOC102293206 coding downstream 13628 4387181 ~ 4391197 (+)
stpg4 LOC107590019,LOC107678571,LOC107708399 coding downstream 19340 4392893 ~ 4400833 (+)
mcfd2 mcfd2,LOC107727380,LOC107699287 coding downstream 64898 4438451 ~ 4441070 (+)
prkceb prkceb,LOC107727364,LOC107699301,LOC107708403,LOC108422423,LOC108263296 coding downstream 100867 4474420 ~ 4547509 (+)
epas1b LOC107727363,LOC107586486,LOC107699276,LOC107708405 coding downstream 175547 4549100 ~ 4583499 (+)
LOC122357002 NA non-coding upstream 118233 4244608 ~ 4245790 (+)
LOC122356176 NA non-coding upstream 221521 4137317 ~ 4142502 (+)
G90650 NA non-coding upstream 258552 4105247 ~ 4105471 (+)
G90646 LOC107707147,LOC108422651 non-coding upstream 301244 4057260 ~ 4062779 (+)
G90579 LOC107586473,LOC107758132,LOC107666233 non-coding upstream 350907 3992508 ~ 4013116 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding downstream 86086 4459639 ~ 4465868 (+)
G90700 NA non-coding downstream 97512 4471065 ~ 4471744 (+)
G90888 NA non-coding downstream 591149 4964702 ~ 4965015 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding downstream 629857 5003410 ~ 5013662 (+)
G90905 NA non-coding downstream 661806 5035359 ~ 5036116 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 10092 4182499 ~ 4353931 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 531473 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 650260 3620406 ~ 3713763 (+)
G90377 NA other upstream 914006 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 1083026 3277837 ~ 3280997 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 188095 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 618600 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 804165 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 887483 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 1577664 5951217 ~ 5952517 (+)

Expression


Co-expression Network