ppm1ba (ppm1ba,LOC107733761,LOC107585253,LOC107747533,LOC107666482,LOC107602505,LOC107698745)


Basic Information

Item Value
gene id ppm1ba
gene name ppm1ba,LOC107733761,LOC107585253,LOC107747533,LOC107666482,LOC107602505,LOC107698745
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6516883 ~ 6543229 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255874.1
ATGACGACCATCAGGATCACTGAGGACTTCCATCAGCTGGCCTCTGATAATCTAATCAGTCTGCTATGGCCCTGTTATGATCTAATCGGTGATGTCATCAAAGAGCAAACGGGAAAAGACCTGGAATGGGAGTCGCGACGCCGCTCGTATGATGCAGCCgcccccgccatggagccaggcctggggccgggccGCATGCGAgctggtggccgggtcttgccccacggacCCGGCCGGCTCAGCCTGAACAGCGCAAATAcccccgtgggcccaccacctgtgagaggcggcaggctggtgggCTGTTTCAGCTCTCCCAGCGAAGGCCATGTGCTGGAGTTAACCGTGGATGTGAGGGACGTCGCGTACTCTGgttgggggaggactctcactgtcatttgtgcctacgggtcAATGGTGGGGAGGAGGCCGGATAGACTTGGGCAGCCCAAACGCACTGCGAGGTCTGCTGGGAACGctgcagagacccctgtcaggagATTCAACCCCGGCCCGCAGAACTTGACCGGATCCTCGAGGAGTGGCTGGAGACACGGTCCGAAATGGATCGCCATGTTCACTTTGacgacgcagccgtccggagctgtggtcGTAAAGTCTCCGGGTAAGGCGTCGCGGGCGGCAACCCCGAACCCGGCGGTGGACACCGGAAGCGGAGTGATGCTGGctgctgaagaaggagtcctatcgggcatggTTGGCTCCAGGACCCCTGAAGCAGCTGatgAGCGTGGCCTGAGGAATGGGGCGTTTTTAGATAAGCCCAAAACAGAGAAATACAATGCGCACGGGGAAGGGAACGGCCTGCGCGCTGGGCCTCCCAGCAGCATGCAGGGCTGGAGGGTAGAGATGGAGGATGCGCACACAGCAGCCGTGCAGGCCTGCCACATGGCTTGGATGACTGGTCCTTCTTCGGGCGTGTACGATGGGCATGCTGGCTCGCGAGTTGCAAACTACTGCTCCAAACATCTGTTGGAACATATCGTAGCTGCGGGGTCGGCAGATGAACTGCGGAAGGCTGGATCTCCGACACCGAGGCAGACGCCAGCCATAGAAGCGGTGAAGAGGGGTATCCGCGCCGGCTTCCTGAGGATCGACGAACACATGCGCAGCTTCACAGACCTGCGGAACGGCATGGACCGCAGCGGCTCCACCGCGGTGGCTGTGCTGCTCTCTCCAGAACATCTGTACTTCATTAACTGCGGGGACTCTCGGGCCCTTCTCTGCCGCAATGCTCAAGTCTGCTTCTCCACGCTGGACCATAAGCCCTGCGACCCACGGGAGAAGGAGCGCATACAGAACGCGGGTGGCTCTGTGATGATCCAGAGGGTTAACGGATCGCTGGCTGTATCCCGAGCACTGGGTGACTATGACTACAAGTGTGTTGAGGGCAAGGGCCCCACAGAGCAGCTTGTGTCACCGGAGCCTGAAGTGTTCGAAATCGCTCGGTCAGATGCAGAGGATGAATTCGTGGTGCTGGCGCGTGACGGTATTTGGGATGTGATGAGCAACGAGGAGCTGTGTGCCTTAGTGCGATCGAGGCTGGAGGTGACGGATGACCTTGAGAGAGTGTGCAATGAGGTTGTGGATACTTGTCTACATAAagGAAGTCGAGATAATATGAGTATTGTATTAGTCTGTTTGCCAAATGCACCCCAGGTGTCAGAAGAGGCGGTAAAGAGAGATGCTGAGTTGGACAAGTACCTCGAGTCACGAGTGGAAGAGCTCATTGAGAAAGCAGGGGAAGAAGGGGTGCCTGAGCTGGCCCATGTCATGAGCAGCCTGTCCCAAGAAAGCATCCCCAATCTCCCACCAGGGGGTGGCCTTGCCAGCAAGCACAGTGTTATTGAAGCAGTGTACAACCGGTTAAACCCCCAAAGAGAAGAAGATGGTAGTGGTGCTGACCTCGAGGACCCGTGGTAGTCGTCCTGCCCCTGAGGAAAGAGCACCTTTTCTACACAAGACATCAGTCATGTTTCTTTTGTTCCAGTGAAACCAAGAGATTCAACGGACAGTCCTTCAAGAGTCACAACACAATGGAAACAGTACAACCAAAAGCattacaaacactttttttctaatatatgAGGGAAAGAATGGAGATccagttttaaaaacaaactcaaacatgaaaaataactaaatacacatcatacaataaaaaaaacaaacaga

Function

symbol description
ppm1ba Predicted to enable magnesium ion binding activity; manganese ion binding activity; and phosphoprotein phosphatase activity. Predicted to be involved in negative regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human PPM1B (protein phosphatase, Mg2+/Mn2+ dependent 1B).

NR:

description
protein phosphatase 1B isoform X4

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255874.1 True 2196 mRNA 0.56 13 6516883 6543229

Neighbor

gene id symbol gene type direction distance location
abcg8 abcg8,LOC107666472 coding upstream 65375 6444614 ~ 6451508 (+)
cep170aa LOC107747537,LOC107666471,LOC107587839,LOC107733772 coding upstream 87496 6396742 ~ 6429387 (+)
adss2 adss,LOC107733748,LOC107666526,LOC107698758,LOC107585249,LOC101162945,LOC107747588 coding upstream 274351 6227540 ~ 6242532 (+)
si:ch211-132e22.4 si:ch211-132e22.4 coding upstream 304984 6210396 ~ 6211899 (+)
dctn1b LOC107747544,LOC107587846,LOC107666474,LOC107667063,LOC107585248 coding upstream 306625 6184574 ~ 6210258 (+)
slc3a1 slc3a1,LOC107747531,LOC107666489,LOC107698747,LOC107733775 coding downstream 2278 6545507 ~ 6553326 (+)
camkmt si:ch73-54n14.2,camkmt,LOC107602502,LOC107585255,LOC107733780,LOC107698723,LOC107666367 coding downstream 18003 6561232 ~ 6654233 (+)
six3a six3,six3a,LOC107733790,LOC107585256,LOC107711438,LOC107666567 coding downstream 160858 6704087 ~ 6707392 (+)
LOC122356727 LOC107585260,LOC107585259,LOC107733721,LOC107733720,LOC107698744 coding downstream 297368 6840597 ~ 6843540 (+)
LOC122356807 LOC107585259,LOC107733721,LOC107733720,LOC107585260,LOC107683040 coding downstream 301503 6844732 ~ 6848243 (+)
G91343 NA non-coding upstream 63807 6452744 ~ 6453076 (+)
G91324 NA non-coding upstream 146355 6370210 ~ 6370528 (+)
G91250 gabrb1,LOC106937613 non-coding upstream 514821 5998442 ~ 6002062 (+)
G91172 NA non-coding upstream 560285 5954891 ~ 5956598 (+)
G91180 NA non-coding upstream 588750 5927834 ~ 5928133 (+)
G91492 NA non-coding downstream 150433 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 180051 6723280 ~ 6755554 (+)
G91529 NA non-coding downstream 271781 6815010 ~ 6861516 (+)
G91545 NA non-coding downstream 399338 6942567 ~ 6942795 (+)
G91594 NA non-coding downstream 503712 7046941 ~ 7047247 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other upstream 158866 6254603 ~ 6358017 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other upstream 529904 5982518 ~ 5986979 (+)
lamtor3 lamtor3 other upstream 564366 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 1245636 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 1318479 5177718 ~ 5198404 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 549915 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1228331 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1292951 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 1315469 7858698 ~ 7886690 (+)
G91833 slc37a1 other downstream 1763257 8306486 ~ 8310824 (+)

Expression


Co-expression Network