ldb3a (ldb3,LOC107706030,LOC107666486)


Basic Information

Item Value
gene id ldb3a
gene name ldb3,LOC107706030,LOC107666486
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8136584 ~ 8171251 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255882.1
CCTGGCATTCTGGGTGTCCCCTTACATGCCATATAAGTACCCTTTCCTCCCCCCTCCCCACAATGCCATAGTGCTATCGCTCTCGGCAGAGGGGCAGCTATTCTTAGGCTGTCTGTCCAGCTCATCTGAACAGAGGCTGTTTGGCACGTGCCCCGCCCCCCTCCAAATCCATTTTCCCCATCCGTTTGGAGAAATTCTGTTGCTTAAACAATACACAGGCTTTTTTGAACAATGAGTTCGTACAACGTTTCACTCACTGGACCTTCGCCTTGGGGCTTCCGGTTGCAAGGAGGCAAGGACTTCAACATGCCCCTCACCGTTTCCAGGATTACACCAGGGAGCAAAGCAGCCTCCAGCAACCTGATCCAGGGTGACATTATTGTGGCCATTGATGGGGTCAGCACAGAGGGGATGACACACCTGGAGGCCCAAAACAAGATCAAGTCTGCCAACTTCAATTTGGCCCTTACCATGCAAAGGTCAAAGCGACCCACTCCAGTTCCCATGACAACACCAAGGATTGACTCCCCTATGCCTGTGATCCCTCATCAGAAGGTTATTACCAACACTCCTGCCAACACTGAGTACCTGCCCAGCTTCAACCCAATAGCTCTGAAGGACACTGCACTCTCCACCAACAAGCCCATTGAGGTGAAGGGGCCTGGAGGCAAGGCCACCATCATCCATGCACAGTACAACACCCCTATCAGCATGTACTCCCAGGATGCTATTATGGATGCCATTGCTGGCCAGTCCCAGGCCAGGGGTAGCGAGCTGTCTGGTAATCTGCCAGTTAAAGACCGTGTTATAGACAGTGCTTCCCCAGTGTATCAGGCCGTCATCCCCAGTGAAACCAATGAAATGGGGCCGGCTGATTGGGCCAAAAGAGCCGCCCAGCTGCAGTCCAAGTCCTTCCGTGTCCTCGCCCACATTACTGGAACTGAATACATGCAAGACCCTGATGAGGAAGCTCTGAGAAAGTCAAGGGAAAGGTTTGAATCTGAAGCCAAAGGCCCTCGTTTTGCTAAACTGAAAAACTGGCACCATGGCCTGTCGGCACAAATACTTAATGTGCCTCAGtcactgcaACCTAACCTTGTATCTAGTACTCCTGCTGAGCATGCTCCAGTTTCCACCAGTATTGCACACATCTCTCTGCCTACTATCGCTGCTTCACCCAATGAGCTCCTTTCGGAGCCGCAGATAGCCAATCAGGCACCCGAGCCTGATGGGGAGCAGAATCCTGAGCAAACCATGGTAACCAGCTTCAACATGCAGACCTCTATGGGTTACACTTCCCAATACAAAACCTCCATCTCCAGTTCTTATCCCCAGCTCCCACCGATGCAGCAGCCACCACCACCCATGCAGCACAGCTCCATCCAGATCCCCGTAGGTCCTCCTCCACCTAAAGTGGTCAGCACTGCCACCATTGTGCCTACAGCCTATTCGGCTGCCCCAGCACCAGCTCCTCCAATGGTTCAGAAATCTGCTCCACCTCCACCTGCTCCTGCCGCAGCTCCTGCGTCTTCTTCCAACAGGCCTCCTTGGGTTACCGATGACAACTTTGCCAATAAATTTGACCCCAGCAAACCCACCCCCACCACAAACATCAGAGTGCAGCCTCTTCCCCAGGCGGCTCCGCCACCACCACCCTACATCCCCAACCCCGTCCCTGCTCCCATTCCCGTCCCCGCACCTGCTCCTGCTCCTGCTGCACCTAGCCCTGCGTTCAACCCTGCCCCCTTCCCACCTGTGGCTCGTGGAGTTGCTCAGAGAGCAGAGCGGTTTGCAGCCAGCAACAGAACACCTCTGTGTGGAGCCTGCAACAGCATCATCAGGGGACCATTCCTGGTGGCATTGGGTCGTTCCTGGCATCCGGAGGAGTTCAACTGCCATTATTGCCACACATCTCTGGCAGATGTCAGCTTTGTGGAGGAGCAGAATAATGTTTACTGTGAAAACTGCTACGGAGAGTTCTTTGCACCTACCTGTGCCCGCTGCAACACCAAGATCATGGGAGAAGTGATGCATGCGCTGCGGCAGACCTGGCACACCACTTGTTTTGTGTGCGCAGCTTGTGGAAAGCCCTTTGGAAACAGCCTCTTCCATATGGAGGATGGTGAGCCATATTGTGAGAAAGATTATATTGCACTCTTCAGCACAAAGTGCCATGGCTGTGACTTCCCAGTTGAGGCAGGAGACAAATTTATTGAAGCTCTTGGCCATACATGGCACGACACCTGCTTTGTTTGTGCGGTGTGCCATGTGAACCTGGAAGGACAACCTTTCTACTCCAAGAAGGACAAGCCCTTATGCAAGAAGCATGCACATGCTATCAATGTGTAGATGCTTCAGCATTGCATCAAAAGCTGTCAGTGAAGGAACTAAATGCAATgaatacatttgcatgtgtGGTTTTTACGGCAAGACACCAGTGCCTATCCAAATGAcacaaaaactaatataaaagatattaaataGCATATCAGTAAGAGGATGAAACtagacattttgacattttaggtCATTCTTTGTCTTTATTATAACCCTGATACATTTGCATACATGCACTTGTTCATCTGATACAGCAATTGAAGAGATataacattttcactttttttttttttttttttttggtttggtgaTTTTATGCAACATACAGTGTTTGTGATATTAGCGACTAAAACCTTAATTTGTTGAAGATTGAAACAGCCTGAAGAAGTCTATGCATATTACGccttaacacattttaattaaacttgaatgtgtttttattccattactatttttttcttgaacGATAATGAGGCCTATAGATCCCTGAATTGCTTGCAAAAGAATGTTAAATAGATTTGAGGCTGTATGTTCTGCAGTCTTTTCAATATTGAATGGGTGTTTTATGTGTTACTAATCTTGTTCATTTGTGCTTTTAGCGTGTGAGAAAGCAAGTGAGCTAATTCATGCATATGTGATGTCAATATTAGCATTATGTGTCATATTTTTATCAACTCATGTTAAGAATAAGAGCAGGGCATCTGAAAAGgtaacagaatttattttaatttattaattgttgCCCTCGCAGTGTATGCAAGACATAGTTAGCTGTAATAATGTCCAGCTCTcaaggaggttttttttttttttttcaattgttcaTTTTTCGCCTTGTCACCTGATTTGAtttctgttgttatttattgtgtgcAAAACCTCAATATTTACAAAATCTTTGCAAATGGTGTACTGTTTTGATTTTGCATGgatcatttacttgttttctttGCCAAGAAAGAgagattcatatttttatttaataaatatttttcgtTAACAAGACAGAGGCACACACAGGATGCAAGTTGTATTGTTAATATGTAACGAATGGGGTAcctgagacttttttttttcctgtgggtATATGCTACCCAACTCTGATGTACAAAACTTTAGGATTACAGTAAAGATTTAGTTTCATGCCTAGTGGCTATTAAAGAACACTatgctaaaaaaatactgagatTGCATTTGTAGACACTGTTTTCCTATGTGATACTGATATTTTATGCATACAATTcacttaaaataacttttatttagagATACTTTATAAATGTGTCCTTGATTTATATATGTTCACTGCCACATATTGAAGTTAATGTAACCCACCACATCAGCCGACATGATCTTAGGGCTACTTTTGATTttggcttctttttttaaatattactaacaaTTGTTTGGCATGTTAAAATTGCCTCTCTTAAATTTAATAAACtgttagcttgttttttttttacacaagatTAGCAAGTGACTTAAAATTGCATTAACAGCAGTGTTGGGCTCAGAAGTGGGAATGTTCTatctttttagcatttttcaaaACCAGATGTATTTGATGTAATTTAATGCTACTGAATGTACaagtaatgtattattatttgtcagCTGCTGTATTCTTCGGTTCACCTGGAAATTACAGAGACAAAGGATTGATCCATAATCACATAAAGCGGCAGATACTTCGATAATACAATAAAGAACCATATACA

Function

symbol description
ldb3 Enables cytoskeletal protein binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to act upstream of or within sarcomere organization. Located in Z disc and cytoskeleton. Implicated in dilated cardiomyopathy; dilated cardiomyopathy 1C; distal myopathy; and myofibrillar myopathy 4. Biomarker of myotonic dystrophy type 1.

NR:

description
PREDICTED: LIM domain-binding protein 3 isoform X2

GO: NA

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255882.1 True 4058 mRNA 0.44 17 8136584 8171251

Neighbor

gene id symbol gene type direction distance location
opn4a opn4a,LOC107706026,LOC107696889,LOC107568552 coding upstream 4701 8111653 ~ 8131883 (+)
usp54a usp54a,LOC107706032,LOC107696887,LOC107568551,LOC107601774 coding upstream 29039 8061482 ~ 8107545 (+)
myoz1a myoz1a,myoz1,LOC107696874,LOC107726982,LOC107601804,LOC107666563,LOC107743622,LOC107568548 coding upstream 75675 8055209 ~ 8060909 (+)
synpo2la LOC107726984,LOC107666427,LOC107601816,LOC107743568,LOC107696886 coding upstream 83019 8043487 ~ 8053565 (+)
camk2g2 camk2g2,camk2g,LOC107743569,LOC107666428,LOC107726985,LOC107696884,LOC108410509,LOC106959359 coding upstream 95453 7991510 ~ 8041131 (+)
bmpr1aa bmpr1aa,LOC107743563,LOC107666410,LOC107696892,LOC107706029,LOC107563048 coding downstream 520 8171771 ~ 8191092 (+)
sncga sncga,LOC107601819,LOC107666408,LOC107725452,LOC107743564,LOC107563049,LOC108438198 coding downstream 44688 8215939 ~ 8222627 (+)
zgc:193505 NA coding downstream 52519 8223770 ~ 8225251 (+)
nfkb2 LOC107725448,LOC107601822,LOC107666457,LOC107743559,LOC107563053,LOC107696896 coding downstream 67163 8238414 ~ 8256098 (+)
dna2 LOC107601824,LOC107666538,LOC107725437,LOC107676588,LOC107563052,LOC107743557,LOC107601826 coding downstream 119920 8291171 ~ 8300745 (+)
LOC122356873 NA non-coding upstream 25306 8108341 ~ 8111278 (+)
G91681 NA non-coding upstream 311243 7823282 ~ 7825341 (+)
G91673 NA non-coding upstream 326480 7809871 ~ 7810104 (+)
G91594 NA non-coding upstream 1089337 7046941 ~ 7047247 (+)
G91545 NA non-coding upstream 1193789 6942567 ~ 6942795 (+)
G91809 LOC107666404,LOC107706028,LOC107601778,LOC107563047,LOC107696890,LOC107743562 non-coding downstream 21075 8192326 ~ 8194318 (+)
G91825 NA non-coding downstream 98060 8269311 ~ 8269581 (+)
G91826 NA non-coding downstream 99911 8271162 ~ 8271394 (+)
G91828 LOC107725451,LOC107743558,LOC107696897,LOC107601823 non-coding downstream 110320 8281571 ~ 8282001 (+)
G91829 si:ch211-150i13.1,LOC107725451,LOC107743558,LOC107563050,LOC107696897 non-coding downstream 110904 8282155 ~ 8282587 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 249894 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 297639 7836180 ~ 7838945 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other upstream 349277 7771560 ~ 7787307 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other upstream 989366 7093144 ~ 7147218 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other upstream 1778567 6254603 ~ 6358017 (+)
G91833 slc37a1 other downstream 135235 8306486 ~ 8310824 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other downstream 495016 8666267 ~ 8683052 (+)
sf3b5 sf3b5,LOC107601807 other downstream 567785 8739036 ~ 8740095 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 854692 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 909597 9080848 ~ 9089121 (+)

Expression


Co-expression Network