arl3a (arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158)


Basic Information

Item Value
gene id arl3a
gene name arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6104126 ~ 6107776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255890.1
CGCGAGGTATTAACGTTCtcaataatttgattttaattataacatttgaaaatcaGAAGAACattgaaaagacaaaaaaatagcattcaGATATGAATGTTCTTCTGCAgtcaaatcaaaacataaaaaaatgtattagtggGTGGAGGACACTATAGTTCATTTATATGAAGTGAGCAAATTCTTCATACAGTGGACTAGCTGTAGATTAACTGCTAATTTTGACCTTTAcaccacagacaaaagcaagcATTGCTTGGTAACTggttaaagtgttttttaaattgtgtttataaTTCTATTATTGATAAAAGCCTATTCTTGACTCTTTAACTCTGTAAAGTAGTGATTTTCTTGGGCAATAACGGTGAAAGTGTTCAGTCTCTGTAGTAAATGTCGTTACACCCGACTTCGCCGTGTACTCCGAGACTTTGAATCCCGAGCAGAGAAATGTTGGACGTTCAAGAAAAAGAACGCTGTCCCTTTAAAAGGACGCCGAGGGCCGGTGACGTCACTTAGCTCCCCCTAGTAACCCTCGTCGGCGTCTCGGAAGAAACCTGGAGAAAGATGGTGAGAAGTTACCTTCCTCTAGCCGCGTCTCGTGTGTTTCATAATGAGTTAGGGTTCAGGAAACTTAGAGAGTACGTGTCCGTCACCGGGCCTCGGAGCGTGCAGTGCGGGTCGTTAGCAGCAGGAACGGCTTTTCTGTGGGAGTGAGTCCTGACGGCTCAGCCGCGCTAAGGCTGTTATCTGCTGCACCGCTACTTGTTCCCCCGGATATTTAAGCAGGAATGGTTTTACTAATTCAGTTATCATGTTAATTACAGTGAACTAGGCACAACAACGAAAACCAATGCGCCTGCCTACTTATGTACAGACGTCTATGCATAATACGTAATATTACAAAGGGTTTATTATCAATTCTTAGAAAACTAAAGAGTGCCCCAGACCAGGAGGTACGCATACTTCTCCTCGGATTAGACAATGGTGGAAAGACAACACTTCTCAAACAGCTCGCCTCTGAGGATATTAGTCACATCACCCCAACacagGGCTTTAACATTAAGAGCGTACAGTCTCAGGGCTTCAAACTAAATGTCTGGGACATTGGAGGCCAGAGGAAGATAAGGCCGTACTGGAGAAACTACTTCGAAAATACGGACGTGCTTATTTATGTCATAGACAGTGCAGACAGGAAGCGATTTGAGGAAACGGGGCAGGAGTTGGCTGAACTGCTGGATGAGGAGAAACTTAGCGGCGTACCTATTTTGATCTTTGCCAATAAGCAAGACCTGCTGACTGCTGCTCCAGCGTCTGAGATCGCAGAGGGACTGAACCTGCACACTATTCGGGACCGCGTGTGGCAAATTCAGTCATGCTCCGCGCTTACAGGAGAGGGAGTTCAGGATGGCATGAACTGGGTCTGCAAGAACGTTACTGCAAAGAAGAAGCAGTAAGTCTAGTGTATTTTTCGACAGCCGTTCAGGGAATGTGATGAGCAAGCTTTGTGGACCGTGTGGATTCCCTACCAGCTCGTTCGGGTTAAAGGGATACGAGGAGGTTCAGAgaaccttttcttttcttctctcttctgAACCACCTCAGCCACTGCCTCTGTTCCCCCATCACTGGTCTCACTCACAACCACTCCATAAACACTGTGTGCAATAGAATAAAAAACTCTGAATGAATAATGTCCAATCAAAAACTAAAGTGAgtataataagtgtttttttcattattactattactattattatttagtcaGTTTGGTCTTGGAATCTATTTCAATATCTTGGATTTctatgatttatttcttttagatgttttatacagtgctagattaaaaaaaaaaaaaaaaaaaaaaaaacattgttttttgaCTGGCTTGAACCAAAGTGTAATGAAAGCCTAGCTCTTAAGTAGACACTTTAATAAGGTATGGTTGTAACGTTTAGCACACATGATGAAGTCAGAAGACTAAAGCACCAGATCAGCAGCACAGATATTCTTGTCACAAAAAGGAGATTGCAACTAGATGGCATTTTTGACCTCTTGTTTTCTTAGGATAGGATTTTCTGTGATTTTGTGGCACTAGATTAAAACCGAACGTTTTAA
>XM_043255891.1
CGCGAGGTATTAACGTTCtcaataatttgattttaattataacatttgaaaatcaGAAGAACattgaaaagacaaaaaaatagcattcaGATATGAATGTTCTTCTGCAgtcaaatcaaaacataaaaaaatgtattagtggGTGGAGGACACTATAGTTCATTTATATGAAGTGAGCAAATTCTTCATACAGTGGACTAGCTGTAGATTAACTGCTAATTTTGACCTTTAcaccacagacaaaagcaagcATTGCTTGGTAACTggttaaagtgttttttaaattgtgtttataaTTCTATTATTGATAAAAGCCTATTCTTGACTCTTTAACTCTGTAAAGTAGTGATTTTCTTGGGCAATAACGGTGAAAGTGTTCAGTCTCTGTAGTAAATGTCGTTACACCCGACTTCGCCGTGTACTCCGAGACTTTGAATCCCGAGCAGAGAAATGTTGGACGTTCAAGAAAAAGAACGCTGTCCCTTTAAAAGGACGCCGAGGGCCGGTGACGTCACTTAGCTCCCCCTAGTAACCCTCGTCGGCGTCTCGGAAGAAACCTGGAGAAAGATGGGTTTATTATCAATTCTTAGAAAACTAAAGAGTGCCCCAGACCAGGAGGTACGCATACTTCTCCTCGGATTAGACAATGGTGGAAAGACAACACTTCTCAAACAGCTCGCCTCTGAGGATATTAGTCACATCACCCCAACacagGGCTTTAACATTAAGAGCGTACAGTCTCAGGGCTTCAAACTAAATGTCTGGGACATTGGAGGCCAGAGGAAGATAAGGCCGTACTGGAGAAACTACTTCGAAAATACGGACGTGCTTATTTATGTCATAGACAGTGCAGACAGGAAGCGATTTGAGGAAACGGGGCAGGAGTTGGCTGAACTGCTGGATGAGGAGAAACTTAGCGGCGTACCTATTTTGATCTTTGCCAATAAGCAAGACCTGCTGACTGCTGCTCCAGCGTCTGAGATCGCAGAGGGACTGAACCTGCACACTATTCGGGACCGCGTGTGGCAAATTCAGTCATGCTCCGCGCTTACAGGAGAGGGAGTTCAGGATGGCATGAACTGGGTCTGCAAGAACGTTACTGCAAAGAAGAAGCAGTAAGTCTAGTGTATTTTTCGACAGCCGTTCAGGGAATGTGATGAGCAAGCTTTGTGGACCGTGTGGATTCCCTACCAGCTCGTTCGGGTTAAAGGGATACGAGGAGGTTCAGAgaaccttttcttttcttctctcttctgAACCACCTCAGCCACTGCCTCTGTTCCCCCATCACTGGTCTCACTCACAACCACTCCATAAACACTGTGTGCAATAGAATAAAAAACTCTGAATGAATAATGTCCAATCAAAAACTAAAGTGAgtataataagtgtttttttcattattactattactattattatttagtcaGTTTGGTCTTGGAATCTATTTCAATATCTTGGATTTctatgatttatttcttttagatgttttatacagtgctagattaaaaaaaaaaaaaaaaaaaaaaaaacattgttttttgaCTGGCTTGAACCAAAGTGTAATGAAAGCCTAGCTCTTAAGTAGACACTTTAATAAGGTATGGTTGTAACGTTTAGCACACATGATGAAGTCAGAAGACTAAAGCACCAGATCAGCAGCACAGATATTCTTGTCACAAAAAGGAGATTGCAACTAGATGGCATTTTTGACCTCTTGTTTTCTTAGGATAGGATTTTCTGTGATTTTGTGGCACTAGATTAAAACCGAACGTTTTAA

Function

symbol description
arl3 Enables GDP binding activity; GTP binding activity; and microtubule binding activity. Involved in several processes, including cilium assembly; protein localization to cilium; and small GTPase mediated signal transduction. Acts upstream of or within post-Golgi vesicle-mediated transport. Located in several cellular components, including microtubule cytoskeleton; midbody; and photoreceptor connecting cilium. Implicated in Joubert syndrome and retinitis pigmentosa 83.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 3

GO:

id name namespace
GO:0000910 cytokinesis biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0060271 cilium assembly biological_process
GO:0005813 centrosome cellular_component
GO:0032391 photoreceptor connecting cilium cellular_component
GO:0030496 midbody cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K07944 ARL3; ADP-ribosylation factor-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255890.1 True 2118 mRNA 0.42 6 6104126 6107776
XM_043255891.1 False 1780 mRNA 0.40 6 6104126 6107776

Neighbor

gene id symbol gene type direction distance location
npm3 npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732 coding upstream 140 6101631 ~ 6103986 (+)
oga mgea5,LOC107666422,LOC107585241,LOC107667060 coding upstream 2933 6088952 ~ 6101193 (+)
pprc1 pprc1,LOC107666421,LOC107747555,LOC107569410,LOC107667059,LOC107733763,LOC107585240 coding upstream 16625 6078217 ~ 6087501 (+)
LOC122357047 enpep,LOC107747565,LOC107666571,LOC107585235,LOC107667073,LOC107733706 coding upstream 157224 5936401 ~ 5946902 (+)
lrit3b lrit3b,LOC107556923,LOC107666384 coding upstream 168542 5930197 ~ 5935584 (+)
zmp:0000000662 zmp:0000000662,LOC107666523,LOC107747548,LOC107733769,LOC107667074,LOC107585245,LOC108421699,LOC108263473,LOC107569423 coding downstream 44967 6152743 ~ 6159313 (+)
ube2d3 ube2d3,ube2d2,UBE2D2,ube2d1,LOC107585246,LOC108263550,LOC106611705,LOC105029919,LOC105015883 coding downstream 52602 6160378 ~ 6165669 (+)
manba manba,LOC107747546,LOC107733670 coding downstream 58726 6166502 ~ 6173714 (+)
slc39a8 slc39a8,LOC107666352,LOC107747545,LOC107733712,LOC107667057,LOC107585247,LOC107587916 coding downstream 66538 6174314 ~ 6179659 (+)
nat8 LOC107666562,LOC107587914,LOC107747598,LOC107733716,LOC107667058,LOC107585290 coding downstream 72878 6180654 ~ 6183028 (+)
G91250 gabrb1,LOC106937613 non-coding upstream 102064 5998442 ~ 6002062 (+)
G91172 NA non-coding upstream 147528 5954891 ~ 5956598 (+)
G91180 NA non-coding upstream 175993 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 177378 5926358 ~ 5926748 (+)
G91178 NA non-coding upstream 177801 5924540 ~ 5926325 (+)
G91324 NA non-coding downstream 262434 6370210 ~ 6370528 (+)
G91343 NA non-coding downstream 344968 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 585886 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 615504 6723280 ~ 6755554 (+)
G91529 NA non-coding downstream 707234 6815010 ~ 6861516 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other upstream 117147 5982518 ~ 5986979 (+)
lamtor3 lamtor3 other upstream 151609 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 832879 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 905722 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 1106135 4992153 ~ 4997991 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 146827 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 985368 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1663784 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1728404 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 1750922 7858698 ~ 7886690 (+)

Expression


Co-expression Network